Rh7BG459800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016452
Physical Location & Seq
Reverse (-)
54541470 .. 54541787
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG459800.1

Sequence Viewer

Length: 318 bp
ATGGCAGTGGTCGTCCCAGACAGCTCGATCGAGAGTGGAGACGACTCTCCTCATGAACGCCTCTTGGGCTGCGTACGGCTGGTACGGGAACCCGACGTCAATGCCTCCGATGGGCGGTACAAGCTTTTTGATGAACTTTTAGGGTTTGTTCCTGGGAACTCGACATCGATGCCTCCTCCACTGCCGGGTCCAAATCCATGCCCCAATCACCATCGCCATCACCAACGCTGCTACTCCACCGCCCAAAACCTTGCTCCCCAAAAACAAGATCAAATCTTGTTCCTCCGTCACCCTTCCCAGAACCTCTGGAATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.79

Weight (kDa)

6.26

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 99
AciI CCGC 2 cut(s) 115, 240
AcsI RAATTY 1 cut(s) 310
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 3 cut(s) 75, 84, 119
AfiI CCNNNNNNNGG 3 cut(s) 111, 114, 185
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 2 cut(s) 24, 124
AluI AGCT 2 cut(s) 24, 124
Alw26I GTCTC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 69, 228
ApoI RAATTY 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 3 cut(s) 200, 212, 281
AvaII GGWCC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 56, 215
BccI CCATC 3 cut(s) 104, 219, 225
BceAI ACGGC 1 cut(s) 92
BcgI CGANNNNNNTGC 4 cut(s) 83, 117, 151, 185
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 33
BfaI CTAG 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 66
BisI GCNGC 2 cut(s) 70, 229
BlsI GCNGC 2 cut(s) 71, 230
Bme1390I CCNGG 2 cut(s) 153, 186
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 90, 189
BmrFI CCNGG 2 cut(s) 153, 186
BmsI GCATC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 186
Bsa29I ATCGAT 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 152
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 114, 185
BseBI CCWGG 1 cut(s) 153
BseCI ATCGAT 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 3 cut(s) 111, 114, 185
BseRI GAGGAG 2 cut(s) 39, 165
BseXI GCAGC 2 cut(s) 56, 215
Bsh1285I CGRYCG 1 cut(s) 30
BshVI ATCGAT 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 185
BsiWI CGTACG 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 111, 114, 185
BsmAI GTCTC 1 cut(s) 33
BsmBI CGTCTC 1 cut(s) 33
Bsp143I GATC 2 cut(s) 27, 268
BspACI CCGC 2 cut(s) 115, 240
BspDI ATCGAT 1 cut(s) 167
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 90, 189
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 2 cut(s) 27, 268
BssNI GRCGYC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 96
BstKTI GATC 2 cut(s) 30, 271
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 2 cut(s) 27, 268
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 66, 121
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 2 cut(s) 151, 184
BstV1I GCAGC 2 cut(s) 56, 215
Bsu15I ATCGAT 1 cut(s) 167
BsuTUI ATCGAT 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 197
BtsI GCAGTG 2 cut(s) 12, 179
BtsIMutI CAGTG 2 cut(s) 12, 179
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 1 cut(s) 167
Csp6I GTAC 3 cut(s) 74, 83, 118
CviAII CATG 2 cut(s) 53, 198
CviJI RGCY 4 cut(s) 24, 69, 79, 124
CviKI_1 RGCY 4 cut(s) 24, 69, 79, 124
CviQI GTAC 3 cut(s) 74, 83, 118
DpnI GATC 2 cut(s) 29, 270
DpnII GATC 2 cut(s) 27, 268
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 2 cut(s) 56, 201
FaiI YATR 2 cut(s) 54, 199
FatI CATG 2 cut(s) 52, 197
Fnu4HI GCNGC 2 cut(s) 70, 229
Fsp4HI GCNGC 2 cut(s) 70, 229
FspBI CTAG 1 cut(s) 316
GluI GCNGC 2 cut(s) 70, 229
HapII CCGG 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 56, 201
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 44
HpaII CCGG 1 cut(s) 185
HphI GGTGA 3 cut(s) 200, 212, 281
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 31, 53, 307
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 121
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 56, 201
Kzo9I GATC 2 cut(s) 27, 268
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 7 cut(s) 30, 65, 138, 165, 198, 292, 311
Lsp1109I GCAGC 2 cut(s) 56, 215
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 287
MalI GATC 2 cut(s) 29, 270
MboI GATC 2 cut(s) 27, 268
MluCI AATT 1 cut(s) 310
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 7 cut(s) 60, 71, 115, 183, 186, 293, 314
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 153, 186
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 66, 121
NciI CCSGG 1 cut(s) 186
NdeII GATC 2 cut(s) 27, 268
NlaIII CATG 2 cut(s) 56, 201
NlaIV GGNNCC 2 cut(s) 90, 189
NmuCI GTSAC 1 cut(s) 287
PagI TCATGA 1 cut(s) 52
Pfl23II CGTACG 1 cut(s) 73
PkrI GCNGC 2 cut(s) 71, 230
Ple19I CGATCG 1 cut(s) 30
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspLI CGTACG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 90, 189
PspPI GGNCC 1 cut(s) 188
PvuI CGATCG 1 cut(s) 30
RsaI GTAC 3 cut(s) 75, 84, 119
RsaNI GTAC 3 cut(s) 74, 83, 118
SatI GCNGC 2 cut(s) 70, 229
Sau3AI GATC 2 cut(s) 27, 268
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 153, 186
SetI ASST 5 cut(s) 26, 99, 126, 252, 306
SfaNI GCATC 1 cut(s) 159
SinI GGWCC 1 cut(s) 188
Sse9I AATT 1 cut(s) 310
SsiI CCGC 2 cut(s) 115, 240
SspMI CTAG 1 cut(s) 316
StyD4I CCNGG 2 cut(s) 151, 184
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 26, 30, 161, 167
TasI AATT 1 cut(s) 310
TscAI CASTG 2 cut(s) 12, 186
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 69, 228
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 69, 147
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 12, 186
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 310
XspI CTAG 1 cut(s) 316
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.