Rh1AG155800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0016452
Physical Location & Seq
Reverse (-)
29147278 .. 29147520
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG155800.1

Sequence Viewer

Length: 243 bp
ATGGGAGAGATTGGCGTAGACGTTCTTGGCCTTGAAGCTCTGGTACCAAGCGAGAATGGAGCAGAGAAGAGAGAACGATTTGCCGGATCCGATGGGAGACTGGAGCAAGGCATGGCAGTGGTCGTCCCAGACAGCTCGATCGAGAGTGGAGACGACTTGGCTCATGAACGCCTCCTGGGCTGCGTACGGCTGGTACAGGAACTCAACGTCAATGCCTCCGATGCCGTACAAGCTTTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.49

Weight (kDa)

4.37

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 18
AclWI GGATC 2 cut(s) 81, 94
AfaI GTAC 4 cut(s) 45, 186, 195, 228
AgsI TTSAA 1 cut(s) 35
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 3 cut(s) 38, 135, 233
AluI AGCT 3 cut(s) 38, 135, 233
Alw26I GTCTC 2 cut(s) 91, 144
AlwI GGATC 2 cut(s) 81, 94
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 180
Asp718I GGTACC 1 cut(s) 43
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 27, 59
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 203, 209
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 91, 144
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 1 cut(s) 176
BmiI GGNNCC 2 cut(s) 45, 88
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 84
BsiWI CGTACG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 91, 144
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 86, 138
BspANI GGCC 1 cut(s) 30
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 45, 88
BspPI GGATC 2 cut(s) 81, 94
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 2 cut(s) 86, 138
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 62
BstKTI GATC 2 cut(s) 89, 141
BstMAI GTCTC 2 cut(s) 91, 144
BstMBI GATC 2 cut(s) 86, 138
BstMCI CGRYCG 1 cut(s) 141
BstMWI GCNNNNNNNGC 3 cut(s) 177, 221, 230
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 167
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 1 cut(s) 30
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
CciI TCATGA 1 cut(s) 163
Csp6I GTAC 4 cut(s) 44, 185, 194, 227
CviAII CATG 2 cut(s) 112, 164
CviJI RGCY 7 cut(s) 30, 38, 135, 161, 180, 190, 233
CviKI_1 RGCY 7 cut(s) 30, 38, 135, 161, 180, 190, 233
CviQI GTAC 4 cut(s) 44, 185, 194, 227
DpnI GATC 2 cut(s) 88, 140
DpnII GATC 2 cut(s) 86, 138
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 2 cut(s) 115, 167
FaiI YATR 2 cut(s) 113, 165
FaqI GGGAC 1 cut(s) 110
FatI CATG 2 cut(s) 111, 163
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 84
Hin1II CATG 2 cut(s) 115, 167
HindIII AAGCTT 1 cut(s) 231
HpaII CCGG 1 cut(s) 84
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 91, 220
Hpy188III TCNNGA 2 cut(s) 142, 164
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4IV ACGT 2 cut(s) 21, 207
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 221, 230
HpySE526I ACGT 2 cut(s) 21, 207
Hsp92II CATG 2 cut(s) 115, 167
KpnI GGTACC 1 cut(s) 47
Kzo9I GATC 2 cut(s) 86, 138
LmnI GCTCC 2 cut(s) 59, 103
LpnPI CCDG 8 cut(s) 26, 86, 97, 141, 161, 176, 182, 188
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 211
MaeII ACGT 2 cut(s) 21, 207
MalI GATC 2 cut(s) 88, 140
MboI GATC 2 cut(s) 86, 138
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 86
MnlI CCTC 2 cut(s) 182, 226
MslI CAYNNNNRTG 1 cut(s) 116
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 3 cut(s) 177, 221, 230
NdeII GATC 2 cut(s) 86, 138
NlaIII CATG 2 cut(s) 115, 167
NlaIV GGNNCC 2 cut(s) 45, 88
PagI TCATGA 1 cut(s) 163
Pfl23II CGTACG 1 cut(s) 184
PkrI GCNGC 1 cut(s) 182
Ple19I CGATCG 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspLI CGTACG 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 45, 88
PsuI RGATCY 1 cut(s) 86
PvuI CGATCG 1 cut(s) 141
RsaI GTAC 4 cut(s) 45, 186, 195, 228
RsaNI GTAC 4 cut(s) 44, 185, 194, 227
RseI CAYNNNNRTG 1 cut(s) 116
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 86, 138
ScrFI CCNGG 1 cut(s) 176
SetI ASST 5 cut(s) 24, 40, 137, 210, 235
SfaNI GCATC 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 174
TaiI ACGT 2 cut(s) 24, 210
TaqI TCGA 3 cut(s) 137, 141, 238
TscAI CASTG 1 cut(s) 123
TseI GCWGC 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 180
TspRI CASTG 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.