Rh7DG284500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016452
Physical Location & Seq
Reverse (-)
31184404 .. 31184965
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG284500.1

Sequence Viewer

Length: 288 bp
ATGCAAAATCGGACTAACCATGGGATCAGTCATGGCCTTGGGGTTGGGCTTGGAATGGGAGAGATTGGCGTAGACGTTCTTGGCCTTGAAGCTCTGGTACCAAGCGATAATGGAGCAGAGAAGAGAGAACGATTTGTCGGATCCGATGGGAGACTAGAGCAAGGCATGGCAGTGGTCGTCCCAGACAGCTCGATAGAGAGTGGAGACGACTTTTCTCATGAACGTCTCCTGGGCTGCGTACGGCTGGTACAGGAACTCAACGTCAATGCCGTACAAGCTTTTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.12

Weight (kDa)

4.84

Isoelectric Point (pI)

23.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 97
AccI GTMKAC 1 cut(s) 72
AclWI GGATC 3 cut(s) 32, 135, 148
AfaI GTAC 4 cut(s) 99, 240, 249, 273
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 3 cut(s) 92, 189, 278
AluI AGCT 3 cut(s) 92, 189, 278
Alw26I GTCTC 3 cut(s) 145, 198, 230
AlwI GGATC 3 cut(s) 32, 135, 148
AoxI GGCC 2 cut(s) 34, 82
ApeKI GCWGC 1 cut(s) 234
Asp718I GGTACC 1 cut(s) 97
BamHI GGATCC 1 cut(s) 140
BanI GGYRCC 1 cut(s) 97
BarI GAAGNNNNNNTAC 2 cut(s) 81, 113
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 140
BceAI ACGGC 2 cut(s) 254, 257
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 145, 198, 230
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 99, 142
BmrFI CCNGG 1 cut(s) 230
BsaJI CCNNGG 3 cut(s) 19, 37, 229
BseBI CCWGG 1 cut(s) 230
BseDI CCNNGG 3 cut(s) 19, 37, 229
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 2 cut(s) 36, 84
BshNI GGYRCC 1 cut(s) 97
BsiWI CGTACG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 164
BsmAI GTCTC 3 cut(s) 145, 198, 230
BsmBI CGTCTC 2 cut(s) 198, 230
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 36, 84
Bsp143I GATC 2 cut(s) 24, 140
Bsp19I CCATGG 1 cut(s) 19
BspANI GGCC 2 cut(s) 36, 84
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 99, 142
BspPI GGATC 3 cut(s) 32, 135, 148
BspT107I GGYRCC 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 19, 37, 229
BssMI GATC 2 cut(s) 24, 140
BssT1I CCWWGG 2 cut(s) 19, 37
Bst2UI CCWGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 116
BstDSI CCRYGG 1 cut(s) 19
BstKTI GATC 2 cut(s) 27, 143
BstMAI GTCTC 3 cut(s) 145, 198, 230
BstMBI GATC 2 cut(s) 24, 140
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 2 cut(s) 36, 84
BtgI CCRYGG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
CciI TCATGA 1 cut(s) 217
Csp6I GTAC 4 cut(s) 98, 239, 248, 272
CviAII CATG 4 cut(s) 20, 32, 166, 218
CviJI RGCY 8 cut(s) 36, 49, 84, 92, 189, 234, 244, 278
CviKI_1 RGCY 8 cut(s) 36, 49, 84, 92, 189, 234, 244, 278
CviQI GTAC 4 cut(s) 98, 239, 248, 272
DpnI GATC 2 cut(s) 26, 142
DpnII GATC 2 cut(s) 24, 140
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 19, 37
EcoRII CCWGG 1 cut(s) 228
EcoT14I CCWWGG 2 cut(s) 19, 37
ErhI CCWWGG 2 cut(s) 19, 37
Esp3I CGTCTC 2 cut(s) 198, 230
FaeI CATG 4 cut(s) 23, 35, 169, 221
FaiI YATR 4 cut(s) 21, 33, 167, 219
FaqI GGGAC 1 cut(s) 164
FatI CATG 4 cut(s) 19, 31, 165, 217
FblI GTMKAC 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 235
HaeIII GGCC 2 cut(s) 36, 84
Hin1II CATG 4 cut(s) 23, 35, 169, 221
HindIII AAGCTT 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 12, 140, 145
Hpy188III TCNNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4IV ACGT 3 cut(s) 75, 223, 261
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpySE526I ACGT 3 cut(s) 75, 223, 261
Hsp92II CATG 4 cut(s) 23, 35, 169, 221
KpnI GGTACC 1 cut(s) 101
Kzo9I GATC 2 cut(s) 24, 140
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 6 cut(s) 80, 195, 215, 230, 236, 242
Lsp1109I GCAGC 1 cut(s) 221
MaeI CTAG 1 cut(s) 155
MaeII ACGT 3 cut(s) 75, 223, 261
MalI GATC 2 cut(s) 26, 142
MboI GATC 2 cut(s) 24, 140
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 118
MslI CAYNNNNRTG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 275
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 24, 140
NlaIII CATG 4 cut(s) 23, 35, 169, 221
NlaIV GGNNCC 2 cut(s) 99, 142
PagI TCATGA 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 267
Pfl23II CGTACG 1 cut(s) 238
PkrI GCNGC 1 cut(s) 236
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PspLI CGTACG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 99, 142
PsuI RGATCY 1 cut(s) 140
RsaI GTAC 4 cut(s) 99, 240, 249, 273
RsaNI GTAC 4 cut(s) 98, 239, 248, 272
RseI CAYNNNNRTG 1 cut(s) 170
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 24, 140
ScrFI CCNGG 1 cut(s) 230
SetI ASST 6 cut(s) 78, 94, 191, 226, 264, 280
SmiMI CAYNNNNRTG 1 cut(s) 170
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 228
StyI CCWWGG 2 cut(s) 19, 37
TaiI ACGT 3 cut(s) 78, 226, 264
TaqI TCGA 2 cut(s) 191, 283
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 72
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.