Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016452

Physical Location & Seq

Genomic Coordinates Reverse (-)

39251133 .. 39260478

Gene Structure 9346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG309000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGAGAGATTGGCGTATATGTTCTTGGCCTTGAAGCTCTGCTGCCAAGCAAGAATCAAGCAGAGAAGAGCAGTTTCTCGGTTCCGGTGGAGAATGAAGGGCGGCTGCTGGTTGCGAAGCAGCTCGGAGGACGGCTTAGCTGGGTCGGAGGCAGTGAGGCAACCTTGTTGCTGTTGACAAAGGCATGGCAGAAGCAATCAACGCCAGAAGTCATGCAGCGCTGCCAGATTTGGGTGCCTAACAAGGGTTGGGTGTCCAGATCTGATGTCCATATCAAATTTGGCCAACAGCTGGTGATAACTGTTAGGCTCTGTGGGCTTGGGCTGGCTCGGTTTCGACGAACCTCAGCTTCCCAACTCCTAACCACCGAGCCTTTCCTATATAAACCCCTTCACCCCTCCCTCGCTCTCTCACGCGTATTCTTCCTCGCTCTCTGCCTCAGATATTTTCTCAAGTTGACTTGTGTCGTTGCTAAAGATGGCCCTGGTTTCAGGAAGATCAACATTGAATCCGAATGCTCCTCTCTTTGTCCCCGCTGCTTTCCGCCAACCGATTTGCTTCCTGAGACCTTTGATCTCGATGCTGGAGAGGACTTCTCTAATTTTGAAGCAGCTCAGTTTGAAGAGTTCCTCCAGTCGTCTCAAACTGAAGGTAAAAATGCAGGGTTAGATATGAGTGCTGCAGTTCTGAAGAATTTGAAAGCATCAGAAGATAGACGTCCCAAGTTGCTGGTGGAGCCAACGAAGTATGCAGAGAAGCCAGCCAAGTTTGTGAGTCCAAAATGCAGCCCCCGCTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

271

Amino Acids

30.21

Weight (kDa)

9.1

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016452)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0429901
rosa_roxburghii	Rroxscaffold_5G00372260
rosa_samantha	Rh1AG155800 Rh1DG131300 Rh2AG309000 Rh4AG295300 Rh4BG230200 Rh4BG301700 Rh4CG049100 Rh4CG317100 Rh5AG178700 Rh7BG400400 Rh7BG459800 Rh7DG284500
rosa_wichuraiana	Rw4G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	721
AccB1I	GGYRCC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccII	CGCG	1 cut(s)	417
AciI	CCGC	4 cut(s)	103, 535, 545, 793
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	2 cut(s)	278, 694
AcuI	CTGAAG	2 cut(s)	669, 710
AcyI	GRCGYC	1 cut(s)	718
AfeI	AGCGCT	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	232, 245, 292
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	5 cut(s)	35, 509, 608, 623, 700
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	6 cut(s)	38, 124, 141, 292, 350, 614
AluI	AGCT	6 cut(s)	38, 124, 141, 292, 350, 614
Alw26I	GTCTC	2 cut(s)	560, 645
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	3 cut(s)	28, 283, 481
ApoI	RAATTY	2 cut(s)	278, 694
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	307, 386
BalI	TGGCCA	1 cut(s)	285
BanI	GGYRCC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	346
BbvI	GCAGC	9 cut(s)	30, 93, 133, 209, 229, 524, 623, 667, 798
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	486
BcoDI	GTCTC	2 cut(s)	560, 645
BfmI	CTRYAG	1 cut(s)	681
BfoI	RGCGCY	1 cut(s)	223
BglII	AGATCT	1 cut(s)	260
BlpI	GCTNAGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	3 cut(s)	84, 237, 738
BmrFI	CCNGG	1 cut(s)	486
BmsI	GCATC	2 cut(s)	571, 713
BoxI	GACNNNNGTC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	581, 613
BpmI	CTGGAG	2 cut(s)	606, 617
Bpu10I	CCTNAGC	1 cut(s)	346
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	718
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	1 cut(s)	484
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 245, 292
Bse1I	ACTGG	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	1 cut(s)	798
BseLI	CCNNNNNNNGG	3 cut(s)	232, 245, 292
BseMII	CTCAG	4 cut(s)	360, 454, 555, 629
BseNI	ACTGG	1 cut(s)	634
BseRI	GAGGAG	1 cut(s)	511
BseXI	GCAGC	9 cut(s)	30, 93, 133, 209, 229, 524, 623, 667, 798
BseYI	CCCAGC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	30, 285, 483
BshNI	GGYRCC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	516, 705
BslI	CCNNNNNNNGG	3 cut(s)	232, 245, 292
BsmAI	GTCTC	2 cut(s)	560, 645
BsmBI	CGTCTC	1 cut(s)	645
BsmFI	GGGAC	2 cut(s)	516, 705
BsmI	GAATGC	1 cut(s)	521
BsnI	GGCC	3 cut(s)	30, 285, 483
Bso31I	GGTCTC	1 cut(s)	560
Bsp143I	GATC	3 cut(s)	260, 498, 574
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	4 cut(s)	103, 535, 545, 793
BspANI	GGCC	3 cut(s)	30, 285, 483
BspCNI	CTCAG	4 cut(s)	359, 453, 556, 628
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	84, 237, 738
BspMAI	CTGCAG	1 cut(s)	685
BspQI	GCTCTTC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	560
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	260, 498, 574
BssNI	GRCGYC	1 cut(s)	718
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	62, 618
BstACI	GRCGYC	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	327, 762
BstDEI	CTNAG	5 cut(s)	137, 346, 440, 564, 615
BstF5I	GGATG	1 cut(s)	798
BstFNI	CGCG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	3 cut(s)	263, 501, 577
BstMAI	GTCTC	2 cut(s)	560, 645
BstMBI	GATC	3 cut(s)	260, 498, 574
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 316, 736, 792
BstNI	CCWGG	1 cut(s)	486
BstPAI	GACNNNNGTC	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	1 cut(s)	681
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	9 cut(s)	30, 93, 133, 209, 229, 524, 623, 667, 798
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	3 cut(s)	30, 285, 483
BtsCI	GGATG	1 cut(s)	798
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	327, 762
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	482
CviAII	CATG	2 cut(s)	186, 214
DdeI	CTNAG	5 cut(s)	137, 346, 440, 564, 615
DpnI	GATC	3 cut(s)	262, 500, 576
DpnII	GATC	3 cut(s)	260, 498, 574
EaeI	YGGCCR	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	62, 618
EarI	CTCTTC	2 cut(s)	62, 618
EciI	GGCGGA	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	560
Eco47III	AGCGCT	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	669, 710
EcoRII	CCWGG	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	645
FaeI	CATG	2 cut(s)	189, 217
FaiI	YATR	9 cut(s)	19, 21, 187, 215, 273, 382, 384, 674, 750
FaqI	GGGAC	2 cut(s)	516, 705
FatI	CATG	2 cut(s)	185, 213
FauI	CCCGC	2 cut(s)	542, 800
FokI	GGATG	1 cut(s)	785
GlaI	GCGC	1 cut(s)	221
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	2 cut(s)	606, 617
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	3 cut(s)	30, 285, 483
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	718
Hin1II	CATG	2 cut(s)	189, 217
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	2 cut(s)	177, 459
HindII	GTYRAC	2 cut(s)	177, 459
HinfI	GANTC	3 cut(s)	55, 509, 775
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	307, 386
Hpy166II	GTNNAC	2 cut(s)	177, 459
Hpy188I	TCNGA	7 cut(s)	128, 149, 265, 443, 514, 690, 709
Hpy188III	TCNNGA	4 cut(s)	258, 493, 563, 578
Hpy8I	GTNNAC	2 cut(s)	177, 459
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	3 cut(s)	92, 401, 644
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	718
HpyCH4V	TGCA	5 cut(s)	217, 662, 683, 752, 786
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 316, 736, 792
HpyF3I	CTNAG	5 cut(s)	137, 346, 440, 564, 615
HpySE526I	ACGT	1 cut(s)	718
Hsp92I	GRCGYC	1 cut(s)	718
Hsp92II	CATG	2 cut(s)	189, 217
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	260, 498, 574
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	524, 736
Lsp1109I	GCAGC	9 cut(s)	30, 93, 133, 209, 229, 524, 623, 667, 798
LweI	GCATC	2 cut(s)	571, 713
MaeII	ACGT	1 cut(s)	718
MalI	GATC	3 cut(s)	262, 500, 576
MboI	GATC	3 cut(s)	260, 498, 574
MboII	GAAGA	6 cut(s)	79, 415, 508, 635, 703, 722
MflI	RGATCY	1 cut(s)	260
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	3 cut(s)	278, 601, 694
MluI	ACGCGT	1 cut(s)	415
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	784
MmeI	TCCRAC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	2 cut(s)	292, 537
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	486
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	4 cut(s)	202, 316, 736, 792
NdeII	GATC	3 cut(s)	260, 498, 574
NlaIII	CATG	2 cut(s)	189, 217
NlaIV	GGNNCC	3 cut(s)	84, 237, 738
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	337
PctI	GAATGC	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	55, 509
PflMI	CCANNNNNTGG	1 cut(s)	292
PleI	GAGTC	1 cut(s)	783
PpsI	GAGTC	1 cut(s)	783
PshAI	GACNNNNGTC	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	484
PspN4I	GGNNCC	3 cut(s)	84, 237, 738
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	1 cut(s)	685
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	62
Sau3AI	GATC	3 cut(s)	260, 498, 574
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	571, 713
SfcI	CTRYAG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	3 cut(s)	278, 601, 694
SsiI	CCGC	4 cut(s)	103, 535, 545, 793
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	2 cut(s)	337, 579
TasI	AATT	3 cut(s)	278, 601, 694
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	55, 509
TscAI	CASTG	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	111, 787
TspRI	CASTG	1 cut(s)	160
Van91I	CCANNNNNTGG	1 cut(s)	292
XapI	RAATTY	2 cut(s)	278, 694
XcmI	CCANNNNNNNNNTGG	2 cut(s)	278, 730
ZraI	GACGTC	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.