Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004023

Physical Location & Seq

Genomic Coordinates Reverse (-)

2435260 .. 2440120

Gene Structure 4861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGGCGTCTCACATTGTTGGATACCCTCGTATGGGCCCCAAGAGAGAGCTCAAGTTTGCCTTGGAATCTTTCTGGGATGGCAAGAGCAGCGCCGAAGATTTGCAAAAGGTGTCTGCTGATCTCAGGTCTTCCATCTGGAAGCAGATGGCTGATGCCGGGATCATGCACATTCCCAGCAACACTTTCTCTTACTACGACCAGGTGCTTGACACCACTGCAATGCTTGGGGCAGTTCCACCAAGATATGGTTGGAATGGTGGTGAGATTGGATTTGGCACTTATTTCTCCATGGCCAGAGGAAATGCCTCAGTTCCTGCTATGGAAATGACCAAGTGGTTCGATACCAACTACCATTTCATTGTCCCTGAGTTGGGTCCTGACGTCAAATTCTCATATGCTTCTCACAAGGCTGTTGAGGAATACAAGGAGGCTAAAGCGCTTGGAGTGGATACAATCCCAGTCCTTGTTGGTCCAGTGACCTACTTGTTGCTGTCCAAACCAGCAAAGGGTGTTGAAAAGACATTTTCGCTTCTCTCTCTTCTAGGAAAAATCATTCCTATTTACAAGGAAGTTATATCTGAGCTTAAGGCAGCTGGAGCATCATGGATTCAGTTTGATGAGCCCACACTTGTTATGGATCTTGATTCTCACAAGTTGCAAGCATTCACTGATGCTTACTCTCAGCTAGAATCAACTCTGTCCGGCTTGAATGTTCTTATTGAGACCTACTTTGCAGATGTACCTGCAGAGGCATACAAGACTCTTACTTCCTTGAAGGGTGTCACTGCCTATGGTTTTGATTTAGTTCGTGGTTCTAAGACCCTTGAGTTAATTAAGAGTGACTTCCCTAAAGGAAAGTGCCTCTTTGCTGGATTGGTTGATGGAAGGAACATTTGGGCTAATGATCTCTCTGCTTCCCTAAGTACATTGCAGGCTCTTGAAGGCATTGTTGGCAAAGATCACCTTGTCGTCTCTACCTCCTGCTCTTGTCTTCACACTGCTGTTGATCTTGTTAATGAGACTAAGCTGGACAATGAAATCAAATCGTGGCTCGCCTTTGCTGCACAGAAAATTCTTGAAGTTAATGCTTTGGCAAAGGCATTGGCTGGTCACAAGGATGAGATTGCAGCTTTTGCTTTTATGATTCAGTGGTTCTTTAAATTTGATTACTCACCTTTTGTGGTGCATCATCAGTCATTTTTCTCAAGCAACGCTGCAGCTCTGGCTTCAAGGAAATCGTCCCCAAGGGTGACCAATGAGGCTGTTCAAAAGGCTGCTGCTGCTTTGAAGGGTTCTGACCACCGTCGTGCTACTAATGTAAGTGCCAGACTTGATGCTCAGCAGAAGAAGCTTAATCTTCCGATTCTCCCAACCACCACCATTGGATCATTCCCTCAGACCATCGAACTGAGAAGGGTTCGCCGTGAATACAAGGCCAAAAAGATCTCTGAGGAGGAGTATGTCAAGGCCATTAAGGAGGAAATTAGCAAAGTTGTCAAGCTTCAGGAAGAGCTTGACATTGATGTCCTTGTTCATGGGGAGCCTGAGAGGAACGACATGGTTGAGTACTTTGGGGAGCAATTATCAGGGTTTGCCTTTACTGTCAATGGGTGGGTGCAATCTTATGGATCTCGATGTGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCAAAGCCAATGACTGTGTTTTGGTCATCTGCTGCTCAGAGCATGACTGCCCGCCCAATGAAGGGAATGCTTACAGGCCCTGTTACCATCCTCAACTGGTCCTTTGTAAGAGTTGACCAGCCCAGGTCTGAGACTACCTACCAGATTGCTTTGGCCATCAAGGATGAAGTGGAGGATCTCGAGAAAGCTGGTATCAATGTTATTCAAATTGATGAGGCTGCGTTGAGAGAAGGGTTGCCTCTCAGGAAGTCTGAGCAAGCTCACTACTTGGATTGGGCCGTGCATTCATTCAGGATCACCAACGTTGGTGTCAAGGACACTACTCAGATTCACACTCACATGTGCTATTCCAACTTCAACGACATCATCCACTCAATCATCGACATGGATGCTGATGTGATCACCATTGAGAATTCTCGTTCTGATGAGAAGCTCCTGTCGGTCTTCCGCGAGGGAGTGAAGTATGGTGCTGGTATTGGTCCTGGTGTTTATGACATCCACTCTCCAAGAATACCATCAACTGAGGAGATTGCTGACCGGATTAACAAGATGCTTGCAGTCCTTGAGACAAATATTTTGTGGGTCAACCCAGACTGTGGGCTTAAGACTCGCAAGTACGCTGAGGTGAAGCCAGCACTCAGTGCTATGGTTGCTGCTGCCAAGCAACTCCGCACTCAGCTTGCCAGTGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0003871 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008168 GO:0008172 GO:0008270 GO:0008652 GO:0008705 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016053 GO:0016740 GO:0016741 GO:0019752 GO:0030054 GO:0031090 GO:0031967 GO:0031975 GO:0032259 GO:0042084 GO:0042085 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050667 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00450 ko01100 ko01110 ko01230 map00270 map00450 map01100 map01110 map01230

Pfam Domains

Protein Families

Meth_synt_1 Meth_synt_2

Protein Analysis

789

Amino Acids

87.47

Weight (kDa)

6.45

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Meth_synt_1	PF08267	3 - 315	3.7e-116	Cobalamin-independent synthase, N-terminal domain
Meth_synt_2	PF01717	456 - 779	1.3e-158	Cobalamin-independent synthase, Catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03780 AT3G03780 AT3G03780 AT5G17920 AT5G17920
fragaria_vesca	FvH4_1g28390 FvH4_1g28390 FvH4_1g28390 FvH4_1g28390 FvH4_2g41260 FvH4_2g41260 FvH4_2g41260 FvH4_2g41260 FvH4_2g41260 FvH4_2g41260
malus_domestica	MD12G1008100.v1.1 MD14G1005500.v1.1
prunus_persica	Prupe.7G009200_v2.0.a1 Prupe.7G009200_v2.0.a1 Prupe.7G009200_v2.0.a1
pyrus_communis	pycom12g00610 pycom14g00410
rosa_chinensis	RchiOBHm_Chr3g0496511
rosa_laevigata	RLG00000022522
rosa_multiflora	Rmu_sc0000620.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389060
rosa_rugosa	Rorug03G0283400 Rorug03G0283500
rosa_samantha	Rh3AG329600 Rh3BG365100 Rh3CG362500 Rh3DG365600
rosa_wichuraiana	Rw3G028830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1523
AatII	GACGTC	1 cut(s)	384
Acc36I	ACCTGC	1 cut(s)	751
AccB7I	CCANNNNNTGG	2 cut(s)	245, 2270
AccII	CGCG	1 cut(s)	2124
AciI	CCGC	4 cut(s)	1672, 1726, 2122, 2344
AclI	AACGTT	1 cut(s)	1977
AclWI	GGATC	6 cut(s)	167, 645, 1393, 1636, 1857, 1976
AcoI	YGGCCR	2 cut(s)	291, 1827
AcsI	RAATTY	4 cut(s)	386, 1071, 1160, 2086
AcuI	CTGAAG	1 cut(s)	1487
AcyI	GRCGYC	2 cut(s)	5, 381
AdeI	CACNNNGTG	1 cut(s)	2315
AfaI	GTAC	4 cut(s)	741, 925, 1568, 2291
AfeI	AGCGCT	1 cut(s)	438
AfiI	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1735, 1736, 2270
AflII	CTTAAG	2 cut(s)	584, 2276
AflIII	ACRYGT	1 cut(s)	2013
AjnI	CCWGG	3 cut(s)	198, 1796, 2155
AjuI	GAANNNNNNNTTGG	6 cut(s)	338, 370, 877, 909, 933, 965
AleI	CACNNNNGTG	1 cut(s)	1305
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	6 cut(s)	12, 716, 976, 1013, 1799, 2234
AlwI	GGATC	6 cut(s)	167, 645, 1393, 1636, 1857, 1976
AlwNI	CAGNNNCTG	2 cut(s)	314, 1754
Ama87I	CYCGRG	1 cut(s)	1853
Aor51HI	AGCGCT	1 cut(s)	438
AoxI	GGCC	7 cut(s)	34, 291, 1434, 1467, 1750, 1827, 1950
ApaI	GGGCCC	1 cut(s)	38
ApoI	RAATTY	4 cut(s)	386, 1071, 1160, 2086
ArsI	GACNNNNNNTTYG	2 cut(s)	2233, 2265
AspLEI	GCGC	2 cut(s)	92, 439
AspS9I	GGNCC	8 cut(s)	34, 35, 374, 470, 1751, 1773, 1950, 2153
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	8 cut(s)	272, 953, 1164, 1261, 1673, 1963, 2068, 2311
AvaI	CYCGRG	1 cut(s)	1853
AvaII	GGWCC	4 cut(s)	374, 470, 1773, 2153
BaeGI	GKGCMC	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	13, 46
BalI	TGGCCA	2 cut(s)	293, 1829
BanII	GRGCYC	3 cut(s)	38, 51, 624
BbsI	GAAGAC	3 cut(s)	120, 983, 2110
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	2295
BccI	CCATC	8 cut(s)	71, 139, 140, 875, 1409, 1769, 1838, 2197
BceAI	ACGGC	2 cut(s)	1407, 1937
BcgI	CGANNNNNNTGC	2 cut(s)	2045, 2079
BciT130I	CCWGG	3 cut(s)	200, 1798, 2157
BciVI	GTATCC	2 cut(s)	14, 442
BclI	TGATCA	1 cut(s)	2073
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	6 cut(s)	12, 716, 976, 1013, 1799, 2234
BfaI	CTAG	2 cut(s)	542, 686
BfmI	CTRYAG	2 cut(s)	744, 1215
BfoI	RGCGCY	2 cut(s)	93, 440
BfrI	CTTAAG	2 cut(s)	584, 2276
BfuAI	ACCTGC	1 cut(s)	751
BfuI	GTATCC	2 cut(s)	14, 442
BglII	AGATCT	1 cut(s)	1443
BlpI	GCTNAGC	1 cut(s)	1338
BmcAI	AGTACT	1 cut(s)	1568
Bme1390I	CCNGG	4 cut(s)	157, 200, 1798, 2157
Bme18I	GGWCC	4 cut(s)	374, 470, 1773, 2153
BmeT110I	CYCGRG	1 cut(s)	1853
BmgT120I	GGNCC	8 cut(s)	34, 35, 374, 470, 1751, 1773, 1950, 2153
BmiI	GGNNCC	4 cut(s)	36, 37, 375, 1542
BmrFI	CCNGG	4 cut(s)	157, 200, 1798, 2157
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	7 cut(s)	142, 608, 661, 1195, 1324, 2053, 2214
BmuI	ACTGGG	1 cut(s)	452
BoxI	GACNNNNGTC	1 cut(s)	1302
BpiI	GAAGAC	3 cut(s)	120, 983, 2110
BpmI	CTGGAG	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	2295
Bpu1102I	GCTNAGC	1 cut(s)	1338
BpuEI	CTTGAG	4 cut(s)	35, 845, 1189, 2258
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	2 cut(s)	5, 381
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	4 cut(s)	60, 288, 1244, 1796
BsaWI	WCCGGW	1 cut(s)	2211
Bsc4I	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1735, 1736, 2270
Bse1I	ACTGG	4 cut(s)	458, 473, 1775, 2358
Bse3DI	GCAATG	2 cut(s)	225, 926
BseBI	CCWGG	3 cut(s)	200, 1798, 2157
BseDI	CCNNGG	4 cut(s)	60, 288, 1244, 1796
BseGI	GGATG	7 cut(s)	82, 1123, 1761, 1843, 2040, 2068, 2169
BseLI	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1735, 1736, 2270
BseMI	GCAATG	2 cut(s)	225, 926
BseNI	ACTGG	4 cut(s)	458, 473, 1775, 2358
BseRI	GAGGAG	3 cut(s)	1466, 1469, 2213
BseSI	GKGCMC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	1047
Bsh1236I	CGCG	1 cut(s)	2124
BshFI	GGCC	7 cut(s)	36, 293, 1436, 1469, 1752, 1829, 1952
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	1853
BsiSI	CCGG	3 cut(s)	156, 702, 2212
BslFI	GGGAC	2 cut(s)	347, 1225
BslI	CCNNNNNNNGG	9 cut(s)	31, 32, 245, 370, 371, 506, 1735, 1736, 2270
BsmAI	GTCTC	6 cut(s)	12, 716, 976, 1013, 1799, 2234
BsmBI	CGTCTC	2 cut(s)	12, 976
BsmFI	GGGAC	2 cut(s)	347, 1225
BsmI	GAATGC	3 cut(s)	662, 1746, 1957
BsnI	GGCC	7 cut(s)	36, 293, 1436, 1469, 1752, 1829, 1952
Bso31I	GGTCTC	1 cut(s)	716
BsoBI	CYCGRG	1 cut(s)	1853
Bsp120I	GGGCCC	1 cut(s)	34
Bsp1286I	GDGCHC	3 cut(s)	38, 51, 624
Bsp1720I	GCTNAGC	1 cut(s)	1338
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	4 cut(s)	1672, 1726, 2122, 2344
BspANI	GGCC	7 cut(s)	36, 293, 1436, 1469, 1752, 1829, 1952
BspFNI	CGCG	1 cut(s)	2124
BspLI	GGNNCC	4 cut(s)	36, 37, 375, 1542
BspMAI	CTGCAG	2 cut(s)	748, 1219
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	6 cut(s)	167, 645, 1393, 1636, 1857, 1976
BspQI	GCTCTTC	1 cut(s)	1503
BspTI	CTTAAG	2 cut(s)	584, 2276
BspTNI	GGTCTC	1 cut(s)	716
BsrDI	GCAATG	2 cut(s)	225, 926
BsrI	ACTGG	4 cut(s)	458, 473, 1775, 2358
BssECI	CCNNGG	4 cut(s)	60, 288, 1244, 1796
BssNI	GRCGYC	2 cut(s)	5, 381
BssT1I	CCWWGG	3 cut(s)	60, 288, 1244
Bst2UI	CCWGG	3 cut(s)	200, 1798, 2157
Bst4CI	ACNGT	4 cut(s)	1304, 1603, 1690, 2270
Bst6I	CTCTTC	2 cut(s)	543, 1503
BstACI	GRCGYC	2 cut(s)	5, 381
BstAFI	CTTAAG	2 cut(s)	584, 2276
BstAPI	GCANNNNNTGC	2 cut(s)	1133, 2315
BstC8I	GCNNGC	8 cut(s)	660, 933, 1053, 1726, 1932, 2229, 2307, 2355
BstDSI	CCRYGG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	1249
BstF5I	GGATG	7 cut(s)	82, 1123, 1761, 1843, 2040, 2068, 2169
BstFNI	CGCG	1 cut(s)	2124
BstH2I	RGCGCY	2 cut(s)	93, 440
BstHHI	GCGC	2 cut(s)	92, 439
BstMAI	GTCTC	6 cut(s)	12, 716, 976, 1013, 1799, 2234
BstNI	CCWGG	3 cut(s)	200, 1798, 2157
BstNSI	RCATGY	1 cut(s)	2017
BstPAI	GACNNNNGTC	1 cut(s)	1302
BstPI	GGTNACC	1 cut(s)	1249
BstSCI	CCNGG	4 cut(s)	155, 198, 1796, 2155
BstSFI	CTRYAG	2 cut(s)	744, 1215
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	2124
BstV2I	GAAGAC	3 cut(s)	120, 983, 2110
BstX2I	RGATCY	4 cut(s)	637, 1443, 1628, 1849
BstYI	RGATCY	4 cut(s)	637, 1443, 1628, 1849
BsuI	GTATCC	2 cut(s)	14, 442
BsuRI	GGCC	7 cut(s)	36, 293, 1436, 1469, 1752, 1829, 1952
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	7 cut(s)	82, 1123, 1761, 1843, 2040, 2068, 2169
BtsI	GCAGTG	3 cut(s)	213, 783, 996
BtsIMutI	CAGTG	8 cut(s)	213, 480, 666, 783, 996, 1154, 2320, 2365
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	8 cut(s)	660, 933, 1053, 1726, 1932, 2229, 2307, 2355
CaiI	CAGNNNCTG	2 cut(s)	314, 1754
CfoI	GCGC	2 cut(s)	92, 439
Cfr13I	GGNCC	8 cut(s)	34, 35, 374, 470, 1751, 1773, 1950, 2153
CsiI	ACCWGGT	1 cut(s)	198
Csp6I	GTAC	4 cut(s)	740, 924, 1567, 2290
CspCI	CAANNNNNGTGG	2 cut(s)	1363, 1398
CviAII	CATG	8 cut(s)	163, 289, 603, 1535, 1558, 1717, 2014, 2059
CviQI	GTAC	4 cut(s)	740, 924, 1567, 2290
DraI	TTTAAA	1 cut(s)	1159
DraIII	CACNNNGTG	1 cut(s)	2315
DrdI	GACNNNNNNGTC	1 cut(s)	1523
DseDI	GACNNNNNNGTC	1 cut(s)	1523
EaeI	YGGCCR	2 cut(s)	291, 1827
Eam1104I	CTCTTC	2 cut(s)	543, 1503
EarI	CTCTTC	2 cut(s)	543, 1503
Ecl136II	GAGCTC	1 cut(s)	49
Eco130I	CCWWGG	3 cut(s)	60, 288, 1244
Eco24I	GRGCYC	3 cut(s)	38, 51, 624
Eco31I	GGTCTC	1 cut(s)	716
Eco47I	GGWCC	4 cut(s)	374, 470, 1773, 2153
Eco47III	AGCGCT	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	1487
Eco88I	CYCGRG	1 cut(s)	1853
Eco91I	GGTNACC	1 cut(s)	1249
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	3 cut(s)	35, 374, 1751
EcoO65I	GGTNACC	1 cut(s)	1249
EcoRI	GAATTC	1 cut(s)	2086
EcoRII	CCWGG	3 cut(s)	198, 1796, 2155
EcoT14I	CCWWGG	3 cut(s)	60, 288, 1244
EcoT38I	GRGCYC	3 cut(s)	38, 51, 624
ErhI	CCWWGG	3 cut(s)	60, 288, 1244
Esp3I	CGTCTC	2 cut(s)	12, 976
FaeI	CATG	8 cut(s)	166, 292, 606, 1538, 1561, 1720, 2017, 2062
FalI	AAGNNNNNCTT	8 cut(s)	44, 76, 827, 859, 848, 880, 948, 980
FaqI	GGGAC	2 cut(s)	347, 1225
FatI	CATG	8 cut(s)	162, 288, 602, 1534, 1557, 1716, 2013, 2058
FauI	CCCGC	1 cut(s)	1733
FauNDI	CATATG	1 cut(s)	394
FbaI	TGATCA	1 cut(s)	2073
FokI	GGATG	7 cut(s)	89, 1130, 1748, 1850, 2027, 2075, 2156
FriOI	GRGCYC	3 cut(s)	38, 51, 624
FspBI	CTAG	2 cut(s)	542, 686
GlaI	GCGC	2 cut(s)	91, 438
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	615
HaeII	RGCGCY	2 cut(s)	93, 440
HaeIII	GGCC	7 cut(s)	36, 293, 1436, 1469, 1752, 1829, 1952
HapII	CCGG	3 cut(s)	156, 702, 2212
HhaI	GCGC	2 cut(s)	92, 439
Hin1I	GRCGYC	2 cut(s)	5, 381
Hin1II	CATG	8 cut(s)	166, 292, 606, 1538, 1561, 1720, 2017, 2062
Hin6I	GCGC	2 cut(s)	90, 437
HinP1I	GCGC	2 cut(s)	90, 437
HincII	GTYRAC	2 cut(s)	1789, 2260
HindII	GTYRAC	2 cut(s)	1789, 2260
HindIII	AAGCTT	2 cut(s)	1349, 1499
HinfI	GANTC	9 cut(s)	65, 607, 644, 689, 760, 1144, 1363, 2002, 2281
HpaII	CCGG	3 cut(s)	156, 702, 2212
HphI	GGTGA	8 cut(s)	272, 953, 1164, 1261, 1673, 1963, 2068, 2311
Hpy166II	GTNNAC	2 cut(s)	1789, 2260
Hpy8I	GTNNAC	2 cut(s)	1789, 2260
Hpy99I	CGWCG	1 cut(s)	1308
HpyAV	CCTTC	7 cut(s)	769, 879, 935, 1282, 1407, 1729, 1898
HpyCH4III	ACNGT	4 cut(s)	1304, 1603, 1690, 2270
HpyCH4IV	ACGT	2 cut(s)	381, 1977
HpySE526I	ACGT	2 cut(s)	381, 1977
Hsp92I	GRCGYC	2 cut(s)	5, 381
Hsp92II	CATG	8 cut(s)	166, 292, 606, 1538, 1561, 1720, 2017, 2062
HspAI	GCGC	2 cut(s)	90, 437
Ksp22I	TGATCA	1 cut(s)	2073
LguI	GCTCTTC	1 cut(s)	1503
LmnI	GCTCC	4 cut(s)	596, 1540, 1576, 2112
LweI	GCATC	7 cut(s)	142, 608, 661, 1195, 1324, 2053, 2214
MabI	ACCWGGT	1 cut(s)	198
MaeI	CTAG	2 cut(s)	542, 686
MaeII	ACGT	2 cut(s)	381, 1977
MaeIII	GTNAC	6 cut(s)	475, 781, 839, 1109, 1249, 1756
MboII	GAAGA	8 cut(s)	107, 120, 530, 983, 1349, 1357, 1520, 2110
MflI	RGATCY	4 cut(s)	637, 1443, 1628, 1849
MhlI	GDGCHC	3 cut(s)	38, 51, 624
MlsI	TGGCCA	2 cut(s)	293, 1829
MluCI	AATT	8 cut(s)	386, 831, 1071, 1160, 1482, 1580, 1881, 2086
MluNI	TGGCCA	2 cut(s)	293, 1829
MlyI	GAGTC	2 cut(s)	754, 2275
MmeI	TCCRAC	2 cut(s)	230, 2049
Mox20I	TGGCCA	2 cut(s)	293, 1829
MscI	TGGCCA	2 cut(s)	293, 1829
MslI	CAYNNNNRTG	5 cut(s)	218, 1116, 1305, 2012, 2057
Msp20I	TGGCCA	2 cut(s)	293, 1829
MspA1I	CMGCKG	1 cut(s)	593
MspCI	CTTAAG	2 cut(s)	584, 2276
MspI	CCGG	3 cut(s)	156, 702, 2212
MspR9I	CCNGG	4 cut(s)	157, 200, 1798, 2157
Mva1269I	GAATGC	3 cut(s)	662, 1746, 1957
MvaI	CCWGG	3 cut(s)	200, 1798, 2157
MvnI	CGCG	1 cut(s)	2124
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	288
NdeI	CATATG	1 cut(s)	394
NlaIII	CATG	8 cut(s)	166, 292, 606, 1538, 1561, 1720, 2017, 2062
NlaIV	GGNNCC	4 cut(s)	36, 37, 375, 1542
NmuCI	GTSAC	5 cut(s)	475, 781, 839, 1109, 1249
NspI	RCATGY	1 cut(s)	2017
OliI	CACNNNNGTG	1 cut(s)	1305
PacI	TTAATTAA	1 cut(s)	834
PaeR7I	CTCGAG	1 cut(s)	1853
PciI	ACATGT	1 cut(s)	2013
PciSI	GCTCTTC	1 cut(s)	1503
PctI	GAATGC	3 cut(s)	662, 1746, 1957
PfeI	GAWTC	7 cut(s)	65, 607, 644, 689, 1144, 1363, 2002
PflMI	CCANNNNNTGG	2 cut(s)	245, 2270
PleI	GAGTC	2 cut(s)	754, 2275
PpsI	GAGTC	2 cut(s)	754, 2275
PpuMI	RGGWCCY	1 cut(s)	374
PscI	ACATGT	1 cut(s)	2013
PshAI	GACNNNNGTC	1 cut(s)	1302
Psp124BI	GAGCTC	1 cut(s)	51
Psp1406I	AACGTT	1 cut(s)	1977
Psp5II	RGGWCCY	1 cut(s)	374
Psp6I	CCWGG	3 cut(s)	198, 1796, 2155
PspEI	GGTNACC	1 cut(s)	1249
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	3 cut(s)	198, 1796, 2155
PspN4I	GGNNCC	4 cut(s)	36, 37, 375, 1542
PspOMI	GGGCCC	1 cut(s)	34
PspPI	GGNCC	8 cut(s)	34, 35, 374, 470, 1751, 1773, 1950, 2153
PspPPI	RGGWCCY	1 cut(s)	374
PstI	CTGCAG	2 cut(s)	748, 1219
PstNI	CAGNNNCTG	2 cut(s)	314, 1754
PsuI	RGATCY	4 cut(s)	637, 1443, 1628, 1849
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	4 cut(s)	741, 925, 1568, 2291
RsaNI	GTAC	4 cut(s)	740, 924, 1567, 2290
RseI	CAYNNNNRTG	5 cut(s)	218, 1116, 1305, 2012, 2057
SacI	GAGCTC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	1503
Sau96I	GGNCC	8 cut(s)	34, 35, 374, 470, 1751, 1773, 1950, 2153
ScaI	AGTACT	1 cut(s)	1568
SchI	GAGTC	2 cut(s)	754, 2275
ScrFI	CCNGG	4 cut(s)	157, 200, 1798, 2157
SduI	GDGCHC	3 cut(s)	38, 51, 624
SexAI	ACCWGGT	1 cut(s)	198
SfaNI	GCATC	7 cut(s)	142, 608, 661, 1195, 1324, 2053, 2214
SfcI	CTRYAG	2 cut(s)	744, 1215
Sfr274I	CTCGAG	1 cut(s)	1853
SinI	GGWCC	4 cut(s)	374, 470, 1773, 2153
SlaI	CTCGAG	1 cut(s)	1853
SmiMI	CAYNNNNRTG	5 cut(s)	218, 1116, 1305, 2012, 2057
SmlI	CTYRAG	7 cut(s)	50, 584, 824, 1204, 1853, 2237, 2276
SmoI	CTYRAG	7 cut(s)	50, 584, 824, 1204, 1853, 2237, 2276
Sse9I	AATT	8 cut(s)	386, 831, 1071, 1160, 1482, 1580, 1881, 2086
SsiI	CCGC	4 cut(s)	1672, 1726, 2122, 2344
SspI	AATATT	1 cut(s)	2248
SspMI	CTAG	2 cut(s)	542, 686
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	155, 198, 1796, 2155
StyI	CCWWGG	3 cut(s)	60, 288, 1244
TaaI	ACNGT	4 cut(s)	1304, 1603, 1690, 2270
TaiI	ACGT	2 cut(s)	384, 1980
TaqI	TCGA	5 cut(s)	339, 1404, 1633, 1854, 2055
TaqII	GACCGA	1 cut(s)	2104
TasI	AATT	8 cut(s)	386, 831, 1071, 1160, 1482, 1580, 1881, 2086
TatI	WGTACW	2 cut(s)	923, 1566
TauI	GCSGC	1 cut(s)	1674
TfiI	GAWTC	7 cut(s)	65, 607, 644, 689, 1144, 1363, 2002
TscAI	CASTG	8 cut(s)	220, 480, 673, 790, 1003, 1154, 2320, 2365
TseFI	GTSAC	5 cut(s)	475, 781, 839, 1109, 1249
Tsp45I	GTSAC	5 cut(s)	475, 781, 839, 1109, 1249
TspDTI	ATGAA	6 cut(s)	346, 1050, 1523, 1748, 1854, 1950
TspRI	CASTG	8 cut(s)	220, 480, 673, 790, 1003, 1154, 2320, 2365
Van91I	CCANNNNNTGG	2 cut(s)	245, 2270
Vha464I	CTTAAG	2 cut(s)	584, 2276
VpaK11BI	GGWCC	4 cut(s)	374, 470, 1773, 2153
XapI	RAATTY	4 cut(s)	386, 1071, 1160, 2086
XceI	RCATGY	1 cut(s)	2017
XcmI	CCANNNNNNNNNTGG	2 cut(s)	246, 631
XhoI	CTCGAG	1 cut(s)	1853
XspI	CTAG	2 cut(s)	542, 686
ZraI	GACGTC	1 cut(s)	382
ZrmI	AGTACT	1 cut(s)	1568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.