Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013274

Physical Location & Seq

Genomic Coordinates Forward (+)

21306196 .. 21306795

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTTCAAGGCTTTGGTCCGAAATGCGAGAGAGAAGAGGGGAGGAAGAAGAAGACGAAATACAACGACACCAACTCAACCAACAACAATCAAAGCCACTACAATTTCAAGAGGAAGACTTGAAGCCCATGAATGACCACATAGATCTCGACGCTCGGACCAAGAAGAGAGACACGAAAGAGATCGCTAGAAGCTTCGGTCCGACGCTTTGGTGTTCGAGAAGAAAAGTGGCGGCGAGCGCGAAGCTTAAGAAGCGGCGCAACGGCGGCGGATCGGCCACATTGCCGTCGAGAAGCCCATTGGGCGACGGTTCGAGAAACCCGGTTGGAGATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010088 GO:0010154 GO:0010232 GO:0010233 GO:0010588 GO:0016020 GO:0016324 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0061458 GO:0071944 GO:0090698 GO:0098590 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

112

Amino Acids

12.89

Weight (kDa)

9.9

Isoelectric Point (pI)

89.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	9 - 106	1e-10	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38070
fragaria_vesca	FvH4_6g12000
malus_domestica	MD04G1147100.v1.1 MD12G1160400.v1.1
prunus_persica	Prupe.6G270900_v2.0.a1
pyrus_communis	pycom04g13290 pycom12g15220
rosa_chinensis	RchiOBHm_Chr3g0463831
rosa_laevigata	RLG00000024753
rosa_multiflora	Rmu_sc0004796.1_g000009
rosa_roxburghii	Rroxscaffold_6G00399380 Rroxscaffold_6G00416260
rosa_rugosa	Rorug03G0068100
rosa_samantha	Rh3AG125200 Rh3BG129500 Rh3CG132000 Rh3DG130500
rosa_wichuraiana	Rw3G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	242
AciI	CCGC	4 cut(s)	233, 256, 267, 270
AclWI	GGATC	1 cut(s)	280
AcoI	YGGCCR	1 cut(s)	276
AflII	CTTAAG	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	9, 110, 124
AluBI	AGCT	2 cut(s)	195, 247
AluI	AGCT	2 cut(s)	195, 247
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	280
AoxI	GGCC	1 cut(s)	276
AspLEI	GCGC	2 cut(s)	242, 261
AspS9I	GGNCC	3 cut(s)	18, 159, 200
AsuC2I	CCSGG	1 cut(s)	323
AvaII	GGWCC	3 cut(s)	18, 159, 200
BarI	GAAGNNNNNNTAC	2 cut(s)	45, 77
BbsI	GAAGAC	2 cut(s)	60, 123
BceAI	ACGGC	2 cut(s)	271, 280
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	189
BfrI	CTTAAG	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	303
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	3 cut(s)	234, 257, 268
BlsI	GCNGC	3 cut(s)	235, 258, 269
Bme1390I	CCNGG	1 cut(s)	323
Bme18I	GGWCC	3 cut(s)	18, 159, 200
BmgT120I	GGNCC	3 cut(s)	18, 159, 200
BmrFI	CCNGG	1 cut(s)	323
BpiI	GAAGAC	2 cut(s)	60, 123
BpuMI	CCSGG	1 cut(s)	323
Bse3DI	GCAATG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	145, 183, 272, 331
BspACI	CCGC	4 cut(s)	233, 256, 267, 270
BspANI	GGCC	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	242
BspPI	GGATC	1 cut(s)	280
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	281
BssMI	GATC	4 cut(s)	145, 183, 272, 331
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	2 cut(s)	31, 161
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	242, 261
BstKTI	GATC	4 cut(s)	148, 186, 275, 334
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	4 cut(s)	145, 183, 272, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 253, 267, 303
BstSCI	CCNGG	1 cut(s)	321
BstUI	CGCG	1 cut(s)	242
BstV2I	GAAGAC	2 cut(s)	60, 123
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	2 cut(s)	242, 261
Cfr13I	GGNCC	3 cut(s)	18, 159, 200
CpoI	CGGWCCG	1 cut(s)	200
CseI	GACGC	2 cut(s)	161, 214
CspI	CGGWCCG	1 cut(s)	200
CviAII	CATG	1 cut(s)	130
CviJI	RGCY	8 cut(s)	5, 13, 97, 127, 195, 247, 278, 297
CviKI_1	RGCY	8 cut(s)	5, 13, 97, 127, 195, 247, 278, 297
DpnI	GATC	4 cut(s)	147, 185, 274, 333
DpnII	GATC	4 cut(s)	145, 183, 272, 331
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	31, 161
EarI	CTCTTC	2 cut(s)	31, 161
EciI	GGCGGA	1 cut(s)	285
Eco47I	GGWCC	3 cut(s)	18, 159, 200
FaeI	CATG	1 cut(s)	133
FaiI	YATR	2 cut(s)	131, 143
FatI	CATG	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	234, 257, 268
Fsp4HI	GCNGC	3 cut(s)	234, 257, 268
FspBI	CTAG	1 cut(s)	189
GlaI	GCGC	2 cut(s)	241, 260
GluI	GCNGC	3 cut(s)	234, 257, 268
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	2 cut(s)	161, 214
HhaI	GCGC	2 cut(s)	242, 261
Hin1II	CATG	1 cut(s)	133
Hin6I	GCGC	2 cut(s)	240, 259
HinP1I	GCGC	2 cut(s)	240, 259
HindIII	AAGCTT	2 cut(s)	193, 245
HpaII	CCGG	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	22, 159, 204
Hpy188III	TCNNGA	5 cut(s)	110, 149, 219, 291, 315
Hpy99I	CGWCG	4 cut(s)	155, 208, 292, 311
HpyCH4III	ACNGT	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 253, 267, 303
Hsp92II	CATG	1 cut(s)	133
HspAI	GCGC	2 cut(s)	240, 259
Kzo9I	GATC	4 cut(s)	145, 183, 272, 331
MaeI	CTAG	1 cut(s)	189
MalI	GATC	4 cut(s)	147, 185, 274, 333
MboI	GATC	4 cut(s)	145, 183, 272, 331
MboII	GAAGA	7 cut(s)	48, 59, 62, 65, 128, 178, 234
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	227, 307
MnlI	CCTC	3 cut(s)	32, 37, 106
MseI	TTAA	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	4 cut(s)	239, 253, 267, 303
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	4 cut(s)	145, 183, 272, 331
NlaIII	CATG	1 cut(s)	133
PkrI	GCNGC	3 cut(s)	235, 258, 269
PspPI	GGNCC	3 cut(s)	18, 159, 200
PsuI	RGATCY	1 cut(s)	145
Rsr2I	CGGWCCG	1 cut(s)	200
RsrII	CGGWCCG	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	3 cut(s)	234, 257, 268
Sau3AI	GATC	4 cut(s)	145, 183, 272, 331
Sau96I	GGNCC	3 cut(s)	18, 159, 200
ScrFI	CCNGG	1 cut(s)	323
SetI	ASST	2 cut(s)	197, 249
SinI	GGWCC	3 cut(s)	18, 159, 200
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	233, 256, 267, 270
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	311
TaqI	TCGA	4 cut(s)	150, 218, 290, 314
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	104
TauI	GCSGC	3 cut(s)	236, 259, 270
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TspDTI	ATGAA	1 cut(s)	146
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	3 cut(s)	18, 159, 200
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.