Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0013274

Physical Location & Seq

Genomic Coordinates Forward (+)

11132761 .. 11136299

Gene Structure 3539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG130500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGAATCCCAGCACGGACCCACCAAACCCGCCGCAGCCCCACCGACCCTCTACCTCCTGCGACCGCCACCCCGAAGAGAATTTCACCGGCTTCTGCCCCTCATGCCTCTGCGAACGACTCGCCGTTTTGCACCCTTCAACCACCTCTGCTTCTTCCTCGTCCCGAAAACCACCGACTTCCTCGACCGCCGCCGCTGCCCTTAAGGCCATTTTCAAGCCCCCCATTGGCGGTGGCGGGGCCTCTAGCAAAGCCCGACCCACCACCTCCTTTTTTCCTGAGCTCCGCCGCACCAAGTCGTTCTCCGCCTCCAAAAACGAAGGATTCTCCGGCGTTTTCGAGCCGCAGAGAAAGTCCTGCGACGTTCGCGGCCGGAATACGCTCTGGTGTCTCTTCAATCAGGAGAACCCCAACAAGAAAGAGCAACCCACTTGGGGAGCTGCCGGGCCTGAGACTGAAGTCGAAACCAGAAACTTAGCTGGGCCCTCTTCGAGCTTTCGAGGTCCGGTGTTGGAGTCCAAAGAGGAAGAGGAAGAAGACGAAGAAGAAGAGGAAGAGGAAGAGGAAGAACAAGAACAGAACGACGGAGGAATAGGGAGGATTTCCGACGAACTCAATGCGGGCAATGTCAGTGAAATCAGAGTTCCAGAAATCGTAGAGGAGGAAGAAGAAGACGAAATACAACAGCACCAACTCAACCAACAACAAGAGCCACCACTACAATTTCAAGAGGAAGACTTGAAGCCCATGAAGGACCACATAGATCTCGACGCTCAGACCAAGAAGAGAGACCTGAAAGAGATCGCCGGAAGCTTCTGGTCTGCCGCTTCGGTATTCAGCAAGAAACTGCAGAAGTGGCGGCAGAAGCAGAAGCTTAAGAAGCGGCGCAACGGCGGCGGATCGGCCACATTGCCCGTCGAGAAGCCCATTGGGCGACAGTTCAGAGAAACCCAGTCGGAGATCGCTGATTACGGCTTCGGTCGGCGCTCGTGCGACACCGATCCCCGGTTTTCGCTTGATGCGGGTCGGATGTCACTCGACGCGGGTCGGATGTCTTTCGACGACCCGAGATACTCTTTCGACGAGCCTCGTGCTTCGTGGGACGGGTACCTAATTGGAAAGACTTTTCCGAGAATGCCCACCATGCTCTCGGTGGTGGAGGATGCTCCGGTGGTTGTTTCGAGAATCGATGCTCAAATTCCGGTGGAGGAGCCGATGAATGCTATTAACGAAGAGGACCCGGTTCCTGGCGGGTCGGTCCAGACCCAGAACTACTATTCGGACTCTTCTTCCAGGCGGCGCAAGAGTCTGGACCGCTCCAACTCCATCAGGAAGACGGCGGCGGCGGTGGTGGCTGAGATTGACGAAATGAAGTCGGTTTCGAATTCCAAAGTGTCGCCCACTACTGCTGACTACTTCCATGGGCCGAAGCTGGTGGCTCCTGATCGAGAGTCGAGAGATTCTAACTCGAACTCTCTCCGCGATGACTGTTCGGAGACCTTTGAGATGGCGTTTCGCGGCGGCGATCCTGTGCTACGCGGCGGTGATTCGGTGTCTCGCGGCGGGGATTCCGCGGCGTCGGTGGTGGGGAATGGGGAGAGGAAAGATTGTAAGCAGAAGTCTAGAAGGTGGAGCAAGGCCTGGAACATTTGGAGTTTCATACACAGGAGGAGTGGGAACAAGGAGGATGATGAAGATAGGTATAGTAGTAGGCCTAATGGGGTAGAGAGGTCGTTTTCGGAGTCTTGGCCGGAGCTGAGAGGCGGCGGGGAGCGAAATGGGGAAGCAAAGGGTTTCAATCCAAAGATTACGAGGAGCAACAGCAGTGCTAGTTGGAGAAACTCACATAGCTTTGGAGGTGGGGCTTTTGGGAGTATGAGGAAGAATGGTGCTGTTGTTGAGCCACATGTGAATGGACATGGCAATGCAAATGGGAATGGGAATGTGAATGGGAATGGGAATGGGAATGGAAGGAAGAAGAAGGAAGAGTTTGTGCTGGAGAGGAATCGGAGCGCAAGGTATTCACCGAATCACATTGACAACGGACTCTTGCGGTTCTACTTGACGCCGATGAGGAACAGCTGGAGGAGTGGAGGAGGAGCTGGGAAGAGCAGGTCGAATCATGCACATTCCATCGCCAGAAGTGTACTCCGATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010088 GO:0010154 GO:0010232 GO:0010233 GO:0010588 GO:0016020 GO:0016324 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0061458 GO:0071944 GO:0090698 GO:0098590 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

719

Amino Acids

79.74

Weight (kDa)

6.56

Isoelectric Point (pI)

65.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	7 - 694	7.5e-263	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38070
fragaria_vesca	FvH4_6g12000
malus_domestica	MD04G1147100.v1.1 MD12G1160400.v1.1
prunus_persica	Prupe.6G270900_v2.0.a1
pyrus_communis	pycom04g13290 pycom12g15220
rosa_chinensis	RchiOBHm_Chr3g0463831
rosa_laevigata	RLG00000024753
rosa_multiflora	Rmu_sc0004796.1_g000009
rosa_roxburghii	Rroxscaffold_6G00399380 Rroxscaffold_6G00416260
rosa_rugosa	Rorug03G0068100
rosa_samantha	Rh3AG125200 Rh3BG129500 Rh3CG132000 Rh3DG130500
rosa_wichuraiana	Rw3G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2100
Acc65I	GGTACC	1 cut(s)	1104
AccB1I	GGYRCC	1 cut(s)	1104
AccBSI	CCGCTC	1 cut(s)	1314
AccII	CGCG	7 cut(s)	366, 1040, 1479, 1515, 1536, 1557, 1571
AclWI	GGATC	3 cut(s)	904, 992, 1517
AcoI	YGGCCR	3 cut(s)	367, 900, 1745
AcsI	RAATTY	3 cut(s)	79, 1194, 1381
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	1574, 2063
AfaI	GTAC	3 cut(s)	1106, 2145, 2156
AfiI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1002, 1244
AflII	CTTAAG	2 cut(s)	200, 872
AflIII	ACRYGT	1 cut(s)	1903
AgsI	TTSAA	6 cut(s)	138, 214, 394, 725, 739, 1795
AjnI	CCWGG	3 cut(s)	1243, 1289, 1637
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	5 cut(s)	392, 443, 780, 1487, 1557
AlwI	GGATC	3 cut(s)	904, 992, 1517
Ama87I	CYCGRG	1 cut(s)	1063
ApaI	GGGCCC	1 cut(s)	483
ApeKI	GCWGC	3 cut(s)	34, 194, 437
ApoI	RAATTY	3 cut(s)	79, 1194, 1381
Asp718I	GGTACC	1 cut(s)	1104
AspLEI	GCGC	4 cut(s)	885, 984, 1299, 2012
AsuC2I	CCSGG	3 cut(s)	442, 1003, 1238
AsuHPI	GGTGA	3 cut(s)	76, 1553, 2013
AsuII	TTCGAA	1 cut(s)	1379
AvaI	CYCGRG	1 cut(s)	1063
AvaII	GGWCC	6 cut(s)	16, 500, 751, 1234, 1255, 1309
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	1104
BanII	GRGCYC	2 cut(s)	282, 483
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BauI	CACGAG	2 cut(s)	985, 1086
BbsI	GAAGAC	4 cut(s)	540, 675, 738, 1337
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	46, 181, 424
BccI	CCATC	3 cut(s)	1331, 1498, 2138
BceAI	ACGGC	4 cut(s)	107, 904, 985, 1350
BcgI	CGANNNNNNTGC	4 cut(s)	596, 630, 1070, 1104
BciT130I	CCWGG	3 cut(s)	1245, 1291, 1639
BcnI	CCSGG	3 cut(s)	442, 1003, 1238
BcoDI	GTCTC	5 cut(s)	392, 443, 780, 1487, 1557
BfaI	CTAG	3 cut(s)	243, 1620, 1827
BfmI	CTRYAG	1 cut(s)	845
BfoI	RGCGCY	1 cut(s)	985
BfrI	CTTAAG	2 cut(s)	200, 872
BfuAI	ACCTGC	1 cut(s)	2100
BglI	GCCNNNNNGGC	2 cut(s)	203, 928
BglII	AGATCT	1 cut(s)	760
Bme1390I	CCNGG	6 cut(s)	442, 1003, 1238, 1245, 1291, 1639
Bme18I	GGWCC	6 cut(s)	16, 500, 751, 1234, 1255, 1309
BmeT110I	CYCGRG	1 cut(s)	1063
BmiI	GGNNCC	8 cut(s)	18, 238, 481, 1106, 1209, 1236, 1242, 1437
BmrFI	CCNGG	6 cut(s)	442, 1003, 1238, 1245, 1291, 1639
BmrI	ACTGGG	1 cut(s)	943
BmsI	GCATC	3 cut(s)	1006, 1150, 1177
BmuI	ACTGGG	1 cut(s)	943
BoxI	GACNNNNGTC	2 cut(s)	455, 1041
BpiI	GAAGAC	4 cut(s)	540, 675, 738, 1337
BpmI	CTGGAG	2 cut(s)	2015, 2101
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	1379
BpuMI	CCSGG	3 cut(s)	442, 1003, 1238
Bsa29I	ATCGAT	1 cut(s)	1185
BsaHI	GRCGYC	2 cut(s)	1574, 2063
BsaI	GGTCTC	2 cut(s)	780, 1487
BsaJI	CCNNGG	3 cut(s)	1001, 1417, 1569
BsaWI	WCCGGW	3 cut(s)	502, 1165, 1198
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1002, 1244
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	3 cut(s)	628, 905, 1927
BseBI	CCWGG	3 cut(s)	1245, 1291, 1639
BseCI	ATCGAT	1 cut(s)	1185
BseDI	CCNNGG	3 cut(s)	1001, 1417, 1569
BseGI	GGATG	4 cut(s)	1032, 1053, 1165, 1690
BseLI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1002, 1244
BseMI	GCAATG	3 cut(s)	628, 905, 1927
BseMII	CTCAG	5 cut(s)	267, 438, 785, 1344, 1745
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	7 cut(s)	671, 1220, 1681, 1825, 2098, 2106, 2109
BseSI	GKGCMC	1 cut(s)	483
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	46, 181, 424
BseYI	CCCAGC	3 cut(s)	8, 476, 2099
Bsh1236I	CGCG	7 cut(s)	366, 1040, 1479, 1515, 1536, 1557, 1571
Bsh1285I	CGRYCG	4 cut(s)	64, 186, 370, 979
BshNI	GGYRCC	1 cut(s)	1104
BshVI	ATCGAT	1 cut(s)	1185
BsiEI	CGRYCG	4 cut(s)	64, 186, 370, 979
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	1063
BslFI	GGGAC	2 cut(s)	145, 1112
BslI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1002, 1244
BsmAI	GTCTC	5 cut(s)	392, 443, 780, 1487, 1557
BsmFI	GGGAC	2 cut(s)	145, 1112
BsmI	GAATGC	2 cut(s)	1137, 1222
Bso31I	GGTCTC	2 cut(s)	780, 1487
BsoBI	CYCGRG	1 cut(s)	1063
Bsp119I	TTCGAA	1 cut(s)	1379
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	282, 483
Bsp143I	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
Bsp19I	CCATGG	1 cut(s)	1417
BspCNI	CTCAG	5 cut(s)	268, 439, 784, 1345, 1746
BspDI	ATCGAT	1 cut(s)	1185
BspFNI	CGCG	7 cut(s)	366, 1040, 1479, 1515, 1536, 1557, 1571
BspLI	GGNNCC	8 cut(s)	18, 238, 481, 1106, 1209, 1236, 1242, 1437
BspMAI	CTGCAG	1 cut(s)	849
BspMI	ACCTGC	1 cut(s)	2100
BspPI	GGATC	3 cut(s)	904, 992, 1517
BspQI	GCTCTTC	1 cut(s)	2099
BspT104I	TTCGAA	1 cut(s)	1379
BspT107I	GGYRCC	1 cut(s)	1104
BspTI	CTTAAG	2 cut(s)	200, 872
BspTNI	GGTCTC	2 cut(s)	780, 1487
BsrBI	CCGCTC	1 cut(s)	1314
BsrDI	GCAATG	3 cut(s)	628, 905, 1927
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	949
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	3 cut(s)	1001, 1417, 1569
BssMI	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
BssNI	GRCGYC	2 cut(s)	1574, 2063
BssSI	CACGAG	2 cut(s)	985, 1086
BssT1I	CCWWGG	1 cut(s)	1417
Bst2BI	CACGAG	2 cut(s)	985, 1086
Bst2UI	CCWGG	3 cut(s)	1245, 1291, 1639
Bst4CI	ACNGT	2 cut(s)	936, 1487
BstACI	GRCGYC	2 cut(s)	1574, 2063
BstAFI	CTTAAG	2 cut(s)	200, 872
BstBI	TTCGAA	1 cut(s)	1379
BstC8I	GCNNGC	1 cut(s)	619
BstDEI	CTNAG	6 cut(s)	276, 447, 472, 771, 1353, 1754
BstDSI	CCRYGG	2 cut(s)	1417, 1569
BstF5I	GGATG	4 cut(s)	1032, 1053, 1165, 1690
BstFNI	CGCG	7 cut(s)	366, 1040, 1479, 1515, 1536, 1557, 1571
BstH2I	RGCGCY	1 cut(s)	985
BstHHI	GCGC	4 cut(s)	885, 984, 1299, 2012
BstKTI	GATC	7 cut(s)	763, 801, 899, 960, 1000, 1444, 1525
BstMAI	GTCTC	5 cut(s)	392, 443, 780, 1487, 1557
BstMBI	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
BstMCI	CGRYCG	4 cut(s)	64, 186, 370, 979
BstNI	CCWGG	3 cut(s)	1245, 1291, 1639
BstNSI	RCATGY	1 cut(s)	1907
BstPAI	GACNNNNGTC	2 cut(s)	455, 1041
BstSCI	CCNGG	6 cut(s)	440, 1001, 1236, 1243, 1289, 1637
BstSFI	CTRYAG	1 cut(s)	845
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	7 cut(s)	366, 1040, 1479, 1515, 1536, 1557, 1571
BstV1I	GCAGC	3 cut(s)	46, 181, 424
BstV2I	GAAGAC	4 cut(s)	540, 675, 738, 1337
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BstZI	CGGCCG	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	1185
BsuTUI	ATCGAT	1 cut(s)	1185
BtgI	CCRYGG	2 cut(s)	1417, 1569
BtgZI	GCGATG	2 cut(s)	1494, 2116
BtsCI	GGATG	4 cut(s)	1032, 1053, 1165, 1690
BtsI	GCAGTG	1 cut(s)	1828
BtsIMutI	CAGTG	2 cut(s)	634, 1828
BveI	ACCTGC	1 cut(s)	2100
Cac8I	GCNNGC	1 cut(s)	619
CfoI	GCGC	4 cut(s)	885, 984, 1299, 2012
Cfr10I	RCCGGY	1 cut(s)	86
Cfr42I	CCGCGG	1 cut(s)	1572
ClaI	ATCGAT	1 cut(s)	1185
CseI	GACGC	4 cut(s)	776, 1046, 1563, 2071
Csp6I	GTAC	3 cut(s)	1105, 2144, 2155
CviAII	CATG	7 cut(s)	102, 745, 1141, 1418, 1904, 1916, 2120
CviQI	GTAC	3 cut(s)	1105, 2144, 2155
DdeI	CTNAG	6 cut(s)	276, 447, 472, 771, 1353, 1754
DpnI	GATC	7 cut(s)	762, 800, 898, 959, 999, 1443, 1524
DpnII	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
EaeI	YGGCCR	3 cut(s)	367, 900, 1745
EagI	CGGCCG	1 cut(s)	367
EciI	GGCGGA	3 cut(s)	272, 292, 909
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	1417
Eco147I	AGGCCT	2 cut(s)	1637, 1711
Eco24I	GRGCYC	2 cut(s)	282, 483
Eco31I	GGTCTC	2 cut(s)	780, 1487
Eco47I	GGWCC	6 cut(s)	16, 500, 751, 1234, 1255, 1309
Eco52I	CGGCCG	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	1063
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	3 cut(s)	237, 480, 1234
EcoRI	GAATTC	1 cut(s)	1381
EcoRII	CCWGG	3 cut(s)	1243, 1289, 1637
EcoT14I	CCWWGG	1 cut(s)	1417
EcoT38I	GRGCYC	2 cut(s)	282, 483
ErhI	CCWWGG	1 cut(s)	1417
FaeI	CATG	7 cut(s)	105, 748, 1144, 1421, 1907, 1919, 2123
FaqI	GGGAC	2 cut(s)	145, 1112
FatI	CATG	7 cut(s)	101, 744, 1140, 1417, 1903, 1915, 2119
FauI	CCCGC	8 cut(s)	36, 227, 610, 1012, 1033, 1241, 1553, 1757
FokI	GGATG	4 cut(s)	1039, 1060, 1172, 1697
FriOI	GRGCYC	2 cut(s)	282, 483
FspBI	CTAG	3 cut(s)	243, 1620, 1827
GlaI	GCGC	4 cut(s)	884, 983, 1298, 2011
GsaI	CCCAGC	3 cut(s)	12, 480, 2103
GsuI	CTGGAG	2 cut(s)	2015, 2101
HaeII	RGCGCY	1 cut(s)	985
HgaI	GACGC	4 cut(s)	776, 1046, 1563, 2071
HhaI	GCGC	4 cut(s)	885, 984, 1299, 2012
Hin1I	GRCGYC	2 cut(s)	1574, 2063
Hin1II	CATG	7 cut(s)	105, 748, 1144, 1421, 1907, 1919, 2123
Hin6I	GCGC	4 cut(s)	883, 982, 1297, 2010
HinP1I	GCGC	4 cut(s)	883, 982, 1297, 2010
HindIII	AAGCTT	2 cut(s)	808, 869
HphI	GGTGA	3 cut(s)	76, 1553, 2013
Hpy166II	GTNNAC	1 cut(s)	2144
Hpy8I	GTNNAC	1 cut(s)	2144
Hpy99I	CGWCG	9 cut(s)	362, 584, 608, 770, 917, 1040, 1061, 1082, 1579
HpyAV	CCTTC	6 cut(s)	144, 311, 742, 1617, 1962, 1972
HpyCH4III	ACNGT	2 cut(s)	936, 1487
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	130, 847, 1925, 2123
HpyF3I	CTNAG	6 cut(s)	276, 447, 472, 771, 1353, 1754
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	2 cut(s)	1574, 2063
Hsp92II	CATG	7 cut(s)	105, 748, 1144, 1421, 1907, 1919, 2123
HspAI	GCGC	4 cut(s)	883, 982, 1297, 2010
KpnI	GGTACC	1 cut(s)	1108
KspI	CCGCGG	1 cut(s)	1572
Kzo9I	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
LguI	GCTCTTC	1 cut(s)	2099
Lsp1109I	GCAGC	3 cut(s)	46, 181, 424
LweI	GCATC	3 cut(s)	1006, 1150, 1177
MaeI	CTAG	3 cut(s)	243, 1620, 1827
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	1029
MalI	GATC	7 cut(s)	762, 800, 898, 959, 999, 1443, 1524
MbiI	CCGCTC	1 cut(s)	1314
MboI	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	2 cut(s)	282, 483
MluCI	AATT	5 cut(s)	79, 719, 1110, 1194, 1381
MlyI	GAGTC	7 cut(s)	111, 521, 1274, 1312, 1457, 1748, 2037
MmeI	TCCRAC	7 cut(s)	489, 627, 933, 1004, 1025, 1341, 1811
MseI	TTAA	3 cut(s)	201, 873, 1224
MslI	CAYNNNNRTG	2 cut(s)	1908, 1920
MspA1I	CMGCKG	3 cut(s)	194, 1571, 2079
MspCI	CTTAAG	2 cut(s)	200, 872
MspR9I	CCNGG	6 cut(s)	442, 1003, 1238, 1245, 1291, 1639
Mva1269I	GAATGC	2 cut(s)	1137, 1222
MvaI	CCWGG	3 cut(s)	1245, 1291, 1639
MvnI	CGCG	7 cut(s)	366, 1040, 1479, 1515, 1536, 1557, 1571
NciI	CCSGG	3 cut(s)	442, 1003, 1238
NcoI	CCATGG	1 cut(s)	1417
NdeII	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
NlaIII	CATG	7 cut(s)	105, 748, 1144, 1421, 1907, 1919, 2123
NlaIV	GGNNCC	8 cut(s)	18, 238, 481, 1106, 1209, 1236, 1242, 1437
NmuCI	GTSAC	1 cut(s)	1029
NspI	RCATGY	1 cut(s)	1907
NspV	TTCGAA	1 cut(s)	1379
PceI	AGGCCT	2 cut(s)	1637, 1711
PciI	ACATGT	1 cut(s)	1903
PciSI	GCTCTTC	1 cut(s)	2099
PctI	GAATGC	2 cut(s)	1137, 1222
PfeI	GAWTC	9 cut(s)	4, 321, 1182, 1457, 1544, 1565, 2002, 2026, 2116
PleI	GAGTC	7 cut(s)	111, 520, 1274, 1311, 1456, 1747, 2037
PpsI	GAGTC	7 cut(s)	111, 520, 1274, 1311, 1456, 1747, 2037
PpuMI	RGGWCCY	1 cut(s)	1234
PscI	ACATGT	1 cut(s)	1903
PshAI	GACNNNNGTC	2 cut(s)	455, 1041
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	1234
Psp6I	CCWGG	3 cut(s)	1243, 1289, 1637
PspFI	CCCAGC	3 cut(s)	8, 476, 2099
PspGI	CCWGG	3 cut(s)	1243, 1289, 1637
PspN4I	GGNNCC	8 cut(s)	18, 238, 481, 1106, 1209, 1236, 1242, 1437
PspOMI	GGGCCC	1 cut(s)	479
PspPPI	RGGWCCY	1 cut(s)	1234
PstI	CTGCAG	1 cut(s)	849
PsuI	RGATCY	1 cut(s)	760
PvuII	CAGCTG	1 cut(s)	2079
RsaI	GTAC	3 cut(s)	1106, 2145, 2156
RsaNI	GTAC	3 cut(s)	1105, 2144, 2155
RseI	CAYNNNNRTG	2 cut(s)	1908, 1920
SacI	GAGCTC	1 cut(s)	282
SacII	CCGCGG	1 cut(s)	1572
SapI	GCTCTTC	1 cut(s)	2099
SaqAI	TTAA	3 cut(s)	201, 873, 1224
Sau3AI	GATC	7 cut(s)	760, 798, 896, 957, 997, 1441, 1522
SchI	GAGTC	7 cut(s)	111, 521, 1274, 1312, 1457, 1748, 2037
ScrFI	CCNGG	6 cut(s)	442, 1003, 1238, 1245, 1291, 1639
SduI	GDGCHC	2 cut(s)	282, 483
SfaNI	GCATC	3 cut(s)	1006, 1150, 1177
SfcI	CTRYAG	1 cut(s)	845
Sfr303I	CCGCGG	1 cut(s)	1572
SfuI	TTCGAA	1 cut(s)	1379
SgrBI	CCGCGG	1 cut(s)	1572
SinI	GGWCC	6 cut(s)	16, 500, 751, 1234, 1255, 1309
SmiMI	CAYNNNNRTG	2 cut(s)	1908, 1920
SmlI	CTYRAG	2 cut(s)	200, 872
SmoI	CTYRAG	2 cut(s)	200, 872
Sse9I	AATT	5 cut(s)	79, 719, 1110, 1194, 1381
SseBI	AGGCCT	2 cut(s)	1637, 1711
SspMI	CTAG	3 cut(s)	243, 1620, 1827
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	2 cut(s)	1637, 1711
StyD4I	CCNGG	6 cut(s)	440, 1001, 1236, 1243, 1289, 1637
StyI	CCWWGG	1 cut(s)	1417
TaaI	ACNGT	2 cut(s)	936, 1487
TaiI	ACGT	1 cut(s)	363
TaqII	GACCGA	2 cut(s)	965, 1243
TasI	AATT	5 cut(s)	79, 719, 1110, 1194, 1381
TatI	WGTACW	2 cut(s)	2143, 2154
TfiI	GAWTC	9 cut(s)	4, 321, 1182, 1457, 1544, 1565, 2002, 2026, 2116
Tru1I	TTAA	3 cut(s)	201, 873, 1224
Tru9I	TTAA	3 cut(s)	201, 873, 1224
TscAI	CASTG	2 cut(s)	634, 1828
TseFI	GTSAC	1 cut(s)	1029
TseI	GCWGC	3 cut(s)	34, 194, 437
Tsp45I	GTSAC	1 cut(s)	1029
TspDTI	ATGAA	6 cut(s)	17, 761, 1229, 1382, 1645, 1704
TspGWI	ACGGA	3 cut(s)	29, 597, 2055
TspRI	CASTG	2 cut(s)	634, 1828
Vha464I	CTTAAG	2 cut(s)	200, 872
VpaK11BI	GGWCC	6 cut(s)	16, 500, 751, 1234, 1255, 1309
XapI	RAATTY	3 cut(s)	79, 1194, 1381
XbaI	TCTAGA	1 cut(s)	1619
XceI	RCATGY	1 cut(s)	1907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1147
XspI	CTAG	3 cut(s)	243, 1620, 1827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.