Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0013274

Physical Location & Seq

Genomic Coordinates Forward (+)

10197077 .. 10199673

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G010580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGAATCCCAGCACGGACCCACCAAACCCGCCGCAGCCCCACCGACCCTCTACCTCCTGCGACCGCCACCCCGAAGAGAATTTCACCGGCTTCTGCCCCTCATGCCTCTGCGAACGACTCGCCGTTTTGCACCCTTCAACCACCTCTGCTTCTTCCTCGTCCCGAAAACCACCGACTTCCTCGACCGCCGCCGCTGCCCTTAAGGCCATTTTCAAGCCCCCCATTGGCGGTGGCGGGGCCTCTAGCAAAGCCCGACCCACCACCTCCTTTTTTCCTGAGCTCCGCCGCACCAAGTCGTTCTCCGCCTCCAAAAACGAAGGATTCTCCGGCGTTTTCGAGCCGCAGAGAAAGTCCTGCGACGTTCGCGGCCGGAATACGCTCTGGTGTCTCTTCAATCAGGAGAACCCCAACAAGAAAGAGCAACCCACTTGGGGAGCTGCCGGGCCTGAGACTGAAGTCGAAACCAGAAACTTAGCCGGGCCCTCTTCGAGCTTTCGAGGTCCGGTGTTGGAGTCCAAAGAGGAAGAGGAAGAAGACGAAGACGAAGACGAAGACGAAGAGGAAGAGGAAGAGGAAGAACAAGAACAGAACGACGGAGGAATAGGGAGGATTTCCGACGAACTCAATGCGGGCAATGTCAGTGAAATCAGAGTTCCAGAAATCGTAGAGGAGGAAGAAGAAGACGAAATACAACAGCACCAACTCAAACAACAACAATCATCAGAGCCACCACTACAATTTCAAGAGGAAGATTTGAAGCCCATGAAGGACCACATAGATCTCGACGCTCAGACCAAGAAGAGAGACCTGAAAGAGATCGCCGGAAGCTTCTGGTCTGCCGCTTCGGTGTTCAGCAAGAAACTGCAGAAGTGGCGGCAGAAGCAGAAGCTTAAGAAGCGGCGCAACGGCGGCGGATCGGCCACATTGCCCGTCGAGAAGCCCATTGGGCGACAGTTCAGAGAAACCCAGTCGGAGATCGCTGATTACGGCTTCGGTCGGCGCTCGTGCGACACCGATCCCCGGTTTTCGCTCGACGCGGGTCGGATGTCACTCGACGCGGGTCGGATGTCTTTCGACGACCCGAGATACTCTTTCGACGAGCCTCGCGCTTCGTGGGACGGGTACCTAATTGGAAAGACTTTTCCGAGAATGCCCACCATGCTCTCGGTGGTGGAGGATGCTCCGGTGGTTGTTTCGAGAATCGATGCTCAAATTCCGGTGGAGGAGCCGATGAATGCTATTAACGAAGAGGACCCGGTTCCTGGCGGGTCGGTCCAGACCCAGAACTACTATTCGGACTCTTCTTCCAGGCGGCGCAAGAGTCTGGACCGGTCCAACTCCATCAGGAAGACGGCGGCGGCGGTGGTGGCTGAGATTGACGAAATGAAGTCGGTTTCGAATTCCAAAGTGTCGCCCACTACTGCTGACTACTTCCATGGGCCGAAGCTGGTGGCTCCTGATCGAGAGTCGAGAGATTCTAACTCGAACTCTCTCCGCGATGACTGTTCGGAGACCTTTGAGATGGCGTTTCGCGGCGGCGATCCTGTGCTACGCGGCGGTGATTCGGTGTCTCGCGGCGGGGATTCCGCGGCGTCGGTGGTGGGGAATGGGGAGAGGAAAGATTGTAAGCAGAAGTCTAGAAGGTGGAGCAAGGCCTGGAACATTTGGAGTTTCATACACAGGAGGAGTGGGAACAAGGAGGATGATGAAGATAGGTATAGTAGTAGGCCTAATGGGGTAGAGAGGTCGTTTTCGGAGTCTTGGCCGGAGCTGAGAGGCGGCGGGGAGCGAAATGGGGAAGCAAAGGGTTTCAATCCAAAGATTACGAGGAGCAACAGCAGTGCTAGTTGGAGAAACTCACATAGCTTTGGAGGTGGGGCTTTTGGGAGTATGAGGAAGAATGGTGCTGTTGTTGAGCCACATGTGAATGGAAATGGCAATGCAAATGGGAATGTGAATATGAATGGGAATGGGAATGGAAGGAAGAAGAAGGAAGAGTTTGTGCTGGAGAGGAATCGGAGCGCAAGGTATTCACCGAATCACATTGACAATGGACTCTTGCGGTTCTACTTGACGCCGATGAGGAACAGCTGGAGGAGTGGAGGAGGAGCTGGGAAGAGCAGGTCGAATCATGCACATTCCATCACCAGAAGTGTACTCCGATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010088 GO:0010154 GO:0010232 GO:0010233 GO:0010588 GO:0016020 GO:0016324 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0061458 GO:0071944 GO:0090698 GO:0098590 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

723

Amino Acids

80.32

Weight (kDa)

6.18

Isoelectric Point (pI)

66.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	7 - 698	1.7e-261	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38070
fragaria_vesca	FvH4_6g12000
malus_domestica	MD04G1147100.v1.1 MD12G1160400.v1.1
prunus_persica	Prupe.6G270900_v2.0.a1
pyrus_communis	pycom04g13290 pycom12g15220
rosa_chinensis	RchiOBHm_Chr3g0463831
rosa_laevigata	RLG00000024753
rosa_multiflora	Rmu_sc0004796.1_g000009
rosa_roxburghii	Rroxscaffold_6G00399380 Rroxscaffold_6G00416260
rosa_rugosa	Rorug03G0068100
rosa_samantha	Rh3AG125200 Rh3BG129500 Rh3CG132000 Rh3DG130500
rosa_wichuraiana	Rw3G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2112
Acc65I	GGTACC	1 cut(s)	1122
AccB1I	GGYRCC	1 cut(s)	1122
AccII	CGCG	9 cut(s)	366, 1037, 1058, 1107, 1497, 1533, 1554, 1575, 1589
AclWI	GGATC	3 cut(s)	922, 1010, 1535
AcoI	YGGCCR	3 cut(s)	367, 918, 1763
AcsI	RAATTY	3 cut(s)	79, 1212, 1399
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	1592, 2075
AfaI	GTAC	3 cut(s)	1124, 2157, 2168
AfiI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1020, 1262
AflII	CTTAAG	2 cut(s)	200, 890
AflIII	ACRYGT	1 cut(s)	1921
AgeI	ACCGGT	1 cut(s)	1329
AgsI	TTSAA	6 cut(s)	138, 214, 394, 743, 757, 1813
AjnI	CCWGG	3 cut(s)	1261, 1307, 1655
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	5 cut(s)	392, 443, 798, 1505, 1575
AlwI	GGATC	3 cut(s)	922, 1010, 1535
Ama87I	CYCGRG	1 cut(s)	1081
ApaI	GGGCCC	1 cut(s)	483
ApeKI	GCWGC	3 cut(s)	34, 194, 437
ApoI	RAATTY	3 cut(s)	79, 1212, 1399
AsiGI	ACCGGT	1 cut(s)	1329
Asp718I	GGTACC	1 cut(s)	1122
AspLEI	GCGC	5 cut(s)	903, 1002, 1109, 1317, 2024
AsuC2I	CCSGG	4 cut(s)	442, 478, 1021, 1256
AsuHPI	GGTGA	4 cut(s)	76, 1571, 2025, 2137
AsuII	TTCGAA	1 cut(s)	1397
AvaI	CYCGRG	1 cut(s)	1081
AvaII	GGWCC	7 cut(s)	16, 500, 769, 1252, 1273, 1327, 1332
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	1122
BanII	GRGCYC	2 cut(s)	282, 483
BarI	GAAGNNNNNNTAC	2 cut(s)	672, 704
BauI	CACGAG	1 cut(s)	1003
BbsI	GAAGAC	6 cut(s)	540, 546, 552, 558, 687, 1355
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	46, 181, 424
BccI	CCATC	3 cut(s)	1349, 1516, 2150
BceAI	ACGGC	4 cut(s)	107, 922, 1003, 1368
BcgI	CGANNNNNNTGC	2 cut(s)	608, 642
BciT130I	CCWGG	3 cut(s)	1263, 1309, 1657
BcnI	CCSGG	4 cut(s)	442, 478, 1021, 1256
BcoDI	GTCTC	5 cut(s)	392, 443, 798, 1505, 1575
BfaI	CTAG	3 cut(s)	243, 1638, 1845
BfmI	CTRYAG	1 cut(s)	863
BfoI	RGCGCY	1 cut(s)	1003
BfrI	CTTAAG	2 cut(s)	200, 890
BfuAI	ACCTGC	1 cut(s)	2112
BglI	GCCNNNNNGGC	2 cut(s)	203, 946
BglII	AGATCT	1 cut(s)	778
Bme1390I	CCNGG	7 cut(s)	442, 478, 1021, 1256, 1263, 1309, 1657
Bme18I	GGWCC	7 cut(s)	16, 500, 769, 1252, 1273, 1327, 1332
BmeT110I	CYCGRG	1 cut(s)	1081
BmiI	GGNNCC	8 cut(s)	18, 238, 481, 1124, 1227, 1254, 1260, 1455
BmrFI	CCNGG	7 cut(s)	442, 478, 1021, 1256, 1263, 1309, 1657
BmrI	ACTGGG	1 cut(s)	961
BmsI	GCATC	2 cut(s)	1168, 1195
BmuI	ACTGGG	1 cut(s)	961
BoxI	GACNNNNGTC	3 cut(s)	455, 1038, 1059
BpiI	GAAGAC	6 cut(s)	540, 546, 552, 558, 687, 1355
BpmI	CTGGAG	2 cut(s)	2027, 2113
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	1397
BpuMI	CCSGG	4 cut(s)	442, 478, 1021, 1256
Bsa29I	ATCGAT	1 cut(s)	1203
BsaHI	GRCGYC	2 cut(s)	1592, 2075
BsaI	GGTCTC	2 cut(s)	798, 1505
BsaJI	CCNNGG	3 cut(s)	1019, 1435, 1587
BsaWI	WCCGGW	4 cut(s)	502, 1183, 1216, 1329
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1020, 1262
Bse118I	RCCGGY	2 cut(s)	86, 1329
Bse1I	ACTGG	1 cut(s)	967
Bse3DI	GCAATG	3 cut(s)	640, 923, 1945
BseBI	CCWGG	3 cut(s)	1263, 1309, 1657
BseCI	ATCGAT	1 cut(s)	1203
BseDI	CCNNGG	3 cut(s)	1019, 1435, 1587
BseGI	GGATG	4 cut(s)	1050, 1071, 1183, 1708
BseLI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1020, 1262
BseMI	GCAATG	3 cut(s)	640, 923, 1945
BseMII	CTCAG	5 cut(s)	267, 438, 803, 1362, 1763
BseNI	ACTGG	1 cut(s)	967
BseRI	GAGGAG	7 cut(s)	683, 1238, 1699, 1843, 2110, 2118, 2121
BseSI	GKGCMC	1 cut(s)	483
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	46, 181, 424
BseYI	CCCAGC	2 cut(s)	8, 2111
Bsh1236I	CGCG	9 cut(s)	366, 1037, 1058, 1107, 1497, 1533, 1554, 1575, 1589
Bsh1285I	CGRYCG	4 cut(s)	64, 186, 370, 997
BshNI	GGYRCC	1 cut(s)	1122
BshTI	ACCGGT	1 cut(s)	1329
BshVI	ATCGAT	1 cut(s)	1203
BsiEI	CGRYCG	4 cut(s)	64, 186, 370, 997
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	1081
BslFI	GGGAC	2 cut(s)	145, 1130
BslI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1020, 1262
BsmAI	GTCTC	5 cut(s)	392, 443, 798, 1505, 1575
BsmFI	GGGAC	2 cut(s)	145, 1130
BsmI	GAATGC	2 cut(s)	1155, 1240
Bso31I	GGTCTC	2 cut(s)	798, 1505
BsoBI	CYCGRG	1 cut(s)	1081
Bsp119I	TTCGAA	1 cut(s)	1397
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	282, 483
Bsp143I	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
Bsp19I	CCATGG	1 cut(s)	1435
BspCNI	CTCAG	5 cut(s)	268, 439, 802, 1363, 1764
BspDI	ATCGAT	1 cut(s)	1203
BspFNI	CGCG	9 cut(s)	366, 1037, 1058, 1107, 1497, 1533, 1554, 1575, 1589
BspLI	GGNNCC	8 cut(s)	18, 238, 481, 1124, 1227, 1254, 1260, 1455
BspMAI	CTGCAG	1 cut(s)	867
BspMI	ACCTGC	1 cut(s)	2112
BspPI	GGATC	3 cut(s)	922, 1010, 1535
BspQI	GCTCTTC	1 cut(s)	2111
BspT104I	TTCGAA	1 cut(s)	1397
BspT107I	GGYRCC	1 cut(s)	1122
BspTI	CTTAAG	2 cut(s)	200, 890
BspTNI	GGTCTC	2 cut(s)	798, 1505
BsrDI	GCAATG	3 cut(s)	640, 923, 1945
BsrFI	RCCGGY	2 cut(s)	86, 1329
BsrI	ACTGG	1 cut(s)	967
BssAI	RCCGGY	2 cut(s)	86, 1329
BssECI	CCNNGG	3 cut(s)	1019, 1435, 1587
BssMI	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
BssNI	GRCGYC	2 cut(s)	1592, 2075
BssSI	CACGAG	1 cut(s)	1003
BssT1I	CCWWGG	1 cut(s)	1435
Bst2BI	CACGAG	1 cut(s)	1003
Bst2UI	CCWGG	3 cut(s)	1263, 1309, 1657
Bst4CI	ACNGT	2 cut(s)	954, 1505
BstACI	GRCGYC	2 cut(s)	1592, 2075
BstAFI	CTTAAG	2 cut(s)	200, 890
BstBI	TTCGAA	1 cut(s)	1397
BstC8I	GCNNGC	1 cut(s)	631
BstDEI	CTNAG	6 cut(s)	276, 447, 472, 789, 1371, 1772
BstDSI	CCRYGG	2 cut(s)	1435, 1587
BstF5I	GGATG	4 cut(s)	1050, 1071, 1183, 1708
BstFNI	CGCG	9 cut(s)	366, 1037, 1058, 1107, 1497, 1533, 1554, 1575, 1589
BstH2I	RGCGCY	1 cut(s)	1003
BstHHI	GCGC	5 cut(s)	903, 1002, 1109, 1317, 2024
BstKTI	GATC	7 cut(s)	781, 819, 917, 978, 1018, 1462, 1543
BstMAI	GTCTC	5 cut(s)	392, 443, 798, 1505, 1575
BstMBI	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
BstMCI	CGRYCG	4 cut(s)	64, 186, 370, 997
BstNI	CCWGG	3 cut(s)	1263, 1309, 1657
BstNSI	RCATGY	1 cut(s)	1925
BstPAI	GACNNNNGTC	3 cut(s)	455, 1038, 1059
BstSCI	CCNGG	7 cut(s)	440, 476, 1019, 1254, 1261, 1307, 1655
BstSFI	CTRYAG	1 cut(s)	863
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	9 cut(s)	366, 1037, 1058, 1107, 1497, 1533, 1554, 1575, 1589
BstV1I	GCAGC	3 cut(s)	46, 181, 424
BstV2I	GAAGAC	6 cut(s)	540, 546, 552, 558, 687, 1355
BstX2I	RGATCY	1 cut(s)	778
BstYI	RGATCY	1 cut(s)	778
BstZI	CGGCCG	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	1203
BsuTUI	ATCGAT	1 cut(s)	1203
BtgI	CCRYGG	2 cut(s)	1435, 1587
BtgZI	GCGATG	1 cut(s)	1512
BtsCI	GGATG	4 cut(s)	1050, 1071, 1183, 1708
BtsI	GCAGTG	1 cut(s)	1846
BtsIMutI	CAGTG	2 cut(s)	646, 1846
BveI	ACCTGC	1 cut(s)	2112
Cac8I	GCNNGC	1 cut(s)	631
CfoI	GCGC	5 cut(s)	903, 1002, 1109, 1317, 2024
Cfr10I	RCCGGY	2 cut(s)	86, 1329
Cfr42I	CCGCGG	1 cut(s)	1590
ClaI	ATCGAT	1 cut(s)	1203
CseI	GACGC	5 cut(s)	794, 1043, 1064, 1581, 2083
Csp6I	GTAC	3 cut(s)	1123, 2156, 2167
CspAI	ACCGGT	1 cut(s)	1329
CviAII	CATG	6 cut(s)	102, 763, 1159, 1436, 1922, 2132
CviQI	GTAC	3 cut(s)	1123, 2156, 2167
DdeI	CTNAG	6 cut(s)	276, 447, 472, 789, 1371, 1772
DpnI	GATC	7 cut(s)	780, 818, 916, 977, 1017, 1461, 1542
DpnII	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
EaeI	YGGCCR	3 cut(s)	367, 918, 1763
EagI	CGGCCG	1 cut(s)	367
EciI	GGCGGA	3 cut(s)	272, 292, 927
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	1435
Eco147I	AGGCCT	2 cut(s)	1655, 1729
Eco24I	GRGCYC	2 cut(s)	282, 483
Eco31I	GGTCTC	2 cut(s)	798, 1505
Eco47I	GGWCC	7 cut(s)	16, 500, 769, 1252, 1273, 1327, 1332
Eco52I	CGGCCG	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	1081
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	3 cut(s)	237, 480, 1252
EcoRI	GAATTC	1 cut(s)	1399
EcoRII	CCWGG	3 cut(s)	1261, 1307, 1655
EcoT14I	CCWWGG	1 cut(s)	1435
EcoT38I	GRGCYC	2 cut(s)	282, 483
ErhI	CCWWGG	1 cut(s)	1435
FaeI	CATG	6 cut(s)	105, 766, 1162, 1439, 1925, 2135
FaqI	GGGAC	2 cut(s)	145, 1130
FatI	CATG	6 cut(s)	101, 762, 1158, 1435, 1921, 2131
FauI	CCCGC	8 cut(s)	36, 227, 622, 1030, 1051, 1259, 1571, 1775
FokI	GGATG	4 cut(s)	1057, 1078, 1190, 1715
FriOI	GRGCYC	2 cut(s)	282, 483
FspBI	CTAG	3 cut(s)	243, 1638, 1845
GlaI	GCGC	5 cut(s)	902, 1001, 1108, 1316, 2023
GsaI	CCCAGC	2 cut(s)	12, 2115
GsuI	CTGGAG	2 cut(s)	2027, 2113
HaeII	RGCGCY	1 cut(s)	1003
HgaI	GACGC	5 cut(s)	794, 1043, 1064, 1581, 2083
HhaI	GCGC	5 cut(s)	903, 1002, 1109, 1317, 2024
Hin1I	GRCGYC	2 cut(s)	1592, 2075
Hin1II	CATG	6 cut(s)	105, 766, 1162, 1439, 1925, 2135
Hin6I	GCGC	5 cut(s)	901, 1000, 1107, 1315, 2022
HinP1I	GCGC	5 cut(s)	901, 1000, 1107, 1315, 2022
HindIII	AAGCTT	2 cut(s)	826, 887
HphI	GGTGA	4 cut(s)	76, 1571, 2025, 2137
Hpy166II	GTNNAC	1 cut(s)	2156
Hpy8I	GTNNAC	1 cut(s)	2156
HpyAV	CCTTC	6 cut(s)	144, 311, 760, 1635, 1974, 1984
HpyCH4III	ACNGT	2 cut(s)	954, 1505
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	130, 865, 1943, 2135
HpyF3I	CTNAG	6 cut(s)	276, 447, 472, 789, 1371, 1772
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	2 cut(s)	1592, 2075
Hsp92II	CATG	6 cut(s)	105, 766, 1162, 1439, 1925, 2135
HspAI	GCGC	5 cut(s)	901, 1000, 1107, 1315, 2022
KpnI	GGTACC	1 cut(s)	1126
KspI	CCGCGG	1 cut(s)	1590
Kzo9I	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
LguI	GCTCTTC	1 cut(s)	2111
Lsp1109I	GCAGC	3 cut(s)	46, 181, 424
LweI	GCATC	2 cut(s)	1168, 1195
MaeI	CTAG	3 cut(s)	243, 1638, 1845
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	1047
MalI	GATC	7 cut(s)	780, 818, 916, 977, 1017, 1461, 1542
MboI	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
MflI	RGATCY	1 cut(s)	778
MhlI	GDGCHC	2 cut(s)	282, 483
MluCI	AATT	5 cut(s)	79, 737, 1128, 1212, 1399
MlyI	GAGTC	7 cut(s)	111, 521, 1292, 1330, 1475, 1766, 2049
MmeI	TCCRAC	7 cut(s)	489, 639, 951, 1022, 1043, 1359, 1829
MseI	TTAA	3 cut(s)	201, 891, 1242
MslI	CAYNNNNRTG	1 cut(s)	1926
MspA1I	CMGCKG	3 cut(s)	194, 1589, 2091
MspCI	CTTAAG	2 cut(s)	200, 890
MspR9I	CCNGG	7 cut(s)	442, 478, 1021, 1256, 1263, 1309, 1657
Mva1269I	GAATGC	2 cut(s)	1155, 1240
MvaI	CCWGG	3 cut(s)	1263, 1309, 1657
MvnI	CGCG	9 cut(s)	366, 1037, 1058, 1107, 1497, 1533, 1554, 1575, 1589
NciI	CCSGG	4 cut(s)	442, 478, 1021, 1256
NcoI	CCATGG	1 cut(s)	1435
NdeII	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
NlaIII	CATG	6 cut(s)	105, 766, 1162, 1439, 1925, 2135
NlaIV	GGNNCC	8 cut(s)	18, 238, 481, 1124, 1227, 1254, 1260, 1455
NmuCI	GTSAC	1 cut(s)	1047
NspI	RCATGY	1 cut(s)	1925
NspV	TTCGAA	1 cut(s)	1397
PceI	AGGCCT	2 cut(s)	1655, 1729
PciI	ACATGT	1 cut(s)	1921
PciSI	GCTCTTC	1 cut(s)	2111
PctI	GAATGC	2 cut(s)	1155, 1240
PfeI	GAWTC	9 cut(s)	4, 321, 1200, 1475, 1562, 1583, 2014, 2038, 2128
PinAI	ACCGGT	1 cut(s)	1329
PleI	GAGTC	7 cut(s)	111, 520, 1292, 1329, 1474, 1765, 2049
PpsI	GAGTC	7 cut(s)	111, 520, 1292, 1329, 1474, 1765, 2049
PpuMI	RGGWCCY	1 cut(s)	1252
PscI	ACATGT	1 cut(s)	1921
PshAI	GACNNNNGTC	3 cut(s)	455, 1038, 1059
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	1252
Psp6I	CCWGG	3 cut(s)	1261, 1307, 1655
PspFI	CCCAGC	2 cut(s)	8, 2111
PspGI	CCWGG	3 cut(s)	1261, 1307, 1655
PspN4I	GGNNCC	8 cut(s)	18, 238, 481, 1124, 1227, 1254, 1260, 1455
PspOMI	GGGCCC	1 cut(s)	479
PspPPI	RGGWCCY	1 cut(s)	1252
PstI	CTGCAG	1 cut(s)	867
PsuI	RGATCY	1 cut(s)	778
PvuII	CAGCTG	1 cut(s)	2091
RsaI	GTAC	3 cut(s)	1124, 2157, 2168
RsaNI	GTAC	3 cut(s)	1123, 2156, 2167
RseI	CAYNNNNRTG	1 cut(s)	1926
SacI	GAGCTC	1 cut(s)	282
SacII	CCGCGG	1 cut(s)	1590
SapI	GCTCTTC	1 cut(s)	2111
SaqAI	TTAA	3 cut(s)	201, 891, 1242
Sau3AI	GATC	7 cut(s)	778, 816, 914, 975, 1015, 1459, 1540
SchI	GAGTC	7 cut(s)	111, 521, 1292, 1330, 1475, 1766, 2049
ScrFI	CCNGG	7 cut(s)	442, 478, 1021, 1256, 1263, 1309, 1657
SduI	GDGCHC	2 cut(s)	282, 483
SfaNI	GCATC	2 cut(s)	1168, 1195
SfcI	CTRYAG	1 cut(s)	863
Sfr303I	CCGCGG	1 cut(s)	1590
SfuI	TTCGAA	1 cut(s)	1397
SgrBI	CCGCGG	1 cut(s)	1590
SinI	GGWCC	7 cut(s)	16, 500, 769, 1252, 1273, 1327, 1332
SmiMI	CAYNNNNRTG	1 cut(s)	1926
SmlI	CTYRAG	2 cut(s)	200, 890
SmoI	CTYRAG	2 cut(s)	200, 890
Sse9I	AATT	5 cut(s)	79, 737, 1128, 1212, 1399
SseBI	AGGCCT	2 cut(s)	1655, 1729
SspMI	CTAG	3 cut(s)	243, 1638, 1845
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	2 cut(s)	1655, 1729
StyD4I	CCNGG	7 cut(s)	440, 476, 1019, 1254, 1261, 1307, 1655
StyI	CCWWGG	1 cut(s)	1435
TaaI	ACNGT	2 cut(s)	954, 1505
TaiI	ACGT	1 cut(s)	363
TaqII	GACCGA	2 cut(s)	983, 1261
TasI	AATT	5 cut(s)	79, 737, 1128, 1212, 1399
TatI	WGTACW	2 cut(s)	2155, 2166
TfiI	GAWTC	9 cut(s)	4, 321, 1200, 1475, 1562, 1583, 2014, 2038, 2128
Tru1I	TTAA	3 cut(s)	201, 891, 1242
Tru9I	TTAA	3 cut(s)	201, 891, 1242
TscAI	CASTG	2 cut(s)	646, 1846
TseFI	GTSAC	1 cut(s)	1047
TseI	GCWGC	3 cut(s)	34, 194, 437
Tsp45I	GTSAC	1 cut(s)	1047
TspDTI	ATGAA	7 cut(s)	17, 779, 1247, 1400, 1663, 1722, 1976
TspGWI	ACGGA	2 cut(s)	29, 609
TspRI	CASTG	2 cut(s)	646, 1846
Vha464I	CTTAAG	2 cut(s)	200, 890
VpaK11BI	GGWCC	7 cut(s)	16, 500, 769, 1252, 1273, 1327, 1332
XapI	RAATTY	3 cut(s)	79, 1212, 1399
XbaI	TCTAGA	1 cut(s)	1637
XceI	RCATGY	1 cut(s)	1925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1165
XspI	CTAG	3 cut(s)	243, 1638, 1845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.