Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0013274

Physical Location & Seq

Genomic Coordinates Forward (+)

10810050 .. 10813583

Gene Structure 3534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG132000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGAATCCCAGCACGGACCCACCAAACCCGCCGCAGCCCCACCGACCCTCTACCTCCTGCGACCGCCACCCCGAAGAGAATTTCACCGGCTTCTGCCCCTCATGCCTCTGCGAACGACTCGCCGTTTTGCACCCTTCAACCACCTCTGCTTCTTCCTCGTCCCGAAAACCACCGACTTCCTCGACCGCCGCCGCTGCCCTTAAGGCCATTTTCAAGCCCCCCATTGGCGGTGGCGGGGCCTCTAGCAAAGCCCGACCCACCACCTCCTTTTTTCCTGAGCTCCGCCGCACCAAGTCGTTCTCCGCCTCCAAAAACGAAGGATTCTCCGGCGTTTTCGAGCCGCAGAGAAAGTCCTGCGACGTTCGCGGCCGGAATACGCTCTGGTGTCTCTTCAATCAGGAGAACCCCAACAAGAAAGAGCAACCCACTTGGGGAGCTGCCGGGCCTGAGACTGAAGTCGAAACCAGAAACTTAGCCGGGCCCTCTTCGAGCTTTCGAGGTCCGGTGTTGGAGTCCAAAGAGGAAGAGGAAGAAGACGAAGACGAAGACGAAGACGAAGACGAAGAGGAAGAACAAGAACAGAACGACGGAGGAATAGGGAGGATTTCCGACGAACTCAATGCGGGCAATGTCAGTGAAATCAGAGTTCCAGAAATCGTAGAGGAGGAAGAAGAAGACGAAATACAACAGCACCAACTCAACCAACAACAATCAGAGCCACCACTACAATTTCAAGAGGAAGACTTGAAGCCGATGAAGGACCACATAGATCTCGACGCTCAGACCAAGAAGAGAGACCTGAAAGAGATCGCCGGTAGCTTCTGGTCTGCCGCTTCGGTGTTCAGCAAGAAACTGCAGAAGTGGCGGCAGAAGCAGAAGCTTAAGAAGCGGCGCAACGGCGGCGGATCGGCCACATTGCCCGTCGAGAAGCCCATTGGGCGACAGTTCAGAGAAACCCAGTCGGAGATCGCTGATTACGGCTTCGGTCGGCGGTCGTGCGACACCGATCCCCGGTTTTCGCTCGATGCGGGTCGGATGTCACTCGACGCGGGTCGGATGTCTTTCGACGACCCGAGATACTCTTTCGACGAGCCTCGCGCTTCGTGGGACGGGTACCTAATTGGAAGGACTTTTCCGAGAATGCCCACCATGCTCTCGGTGGTGGAGGATGCTCCGGTGGTTGTTTCGAGAATCGATGCTCAAATTCCGGTGGAGGAGCCGATGAATGCTATTAACGAAGAGGACCCGGTTCCTGGCGGGTCGGTCCAGACCCAGAACTACTATTCGGACTCTTCTTCCAGGCGGCGCAAGAGTCTGGACCGCTCCAACTCCATCAGGAAGACGGCGGCGGCGGTGGTGGCTGAGATTGACGAAATGAAGTCGGTTTCGAATTCCAAAGTGTCGCCCACTACTGCTGACTACTTCCATGGGCCGAAGCTGGTGGCTCCTGATCGAGAGTCGAGAGATTCTAACTCGAACTCTCTCCGCGATGACTGCTCGGAGACCTTTGAGATGGCTTTTCGCGGCGGCGATCCTGTGCTACGCGGCGGCGATTCGGTGTCTCGCGGCGGGGATTCCGCGGCGTCGGTGGTGGGGAATGGGGAGAGGAAAGATTGTAAGCAGAAGTCTAGAAGGTGGAGCAAGGCCTGGAACATTTGGAGTTTCATACACAGGAGGAGTGGGAACAAGGAGGATGATGAAGATAGGTATAGTAGTAGGCCTAATGGGGTAGAGAGGTCGTTTTCGGAGTCTTGGCCGGAGCTGAGAGGCGGCGGGGAGCGAAATGGGGAAGCAAAGGGTTTCAATCCAAAGATTACGAGGAGCAACAGCAGTGCTAGTTGGAGAAACTCACATAGCTTTGGAGGTGGGGCTTTTGGGAGTATGAGGAAGAATGGTGCTGTTGTTGAGCCACATGTGAATGGAAATGGCAATGCAAATGGGAATGGGAATGTGAATGGGAATGGGAATGGAAGGAAGAAGAAGGAAGAGTTTGTGCTGGAGAGGAATCGGAGCGCAAGGTATTCACCGAATCACATTGACAATGGACTCTTGCGGTTCTACTTGACGCCGATGAGGAACAGCTGGAGGAGTGGAGGAGGAGCTGGGAAGAGCAGGTCGAATCATGCACATTCCATCGCCAGAAGTGTACTCCGATTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009965 GO:0010016 GO:0010051 GO:0010087 GO:0010088 GO:0010154 GO:0010232 GO:0010233 GO:0010588 GO:0016020 GO:0016324 GO:0022414 GO:0022622 GO:0032501 GO:0032502 GO:0044425 GO:0044459 GO:0044464 GO:0045177 GO:0048316 GO:0048366 GO:0048367 GO:0048598 GO:0048608 GO:0048731 GO:0048825 GO:0048826 GO:0048827 GO:0048856 GO:0051179 GO:0051234 GO:0061458 GO:0071944 GO:0090698 GO:0098590 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF740

Protein Analysis

720

Amino Acids

79.87

Weight (kDa)

6.28

Isoelectric Point (pI)

64.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF740	PF05340	7 - 695	2e-262	Protein of unknown function (DUF740)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38070
fragaria_vesca	FvH4_6g12000
malus_domestica	MD04G1147100.v1.1 MD12G1160400.v1.1
prunus_persica	Prupe.6G270900_v2.0.a1
pyrus_communis	pycom04g13290 pycom12g15220
rosa_chinensis	RchiOBHm_Chr3g0463831
rosa_laevigata	RLG00000024753
rosa_multiflora	Rmu_sc0004796.1_g000009
rosa_roxburghii	Rroxscaffold_6G00399380 Rroxscaffold_6G00416260
rosa_rugosa	Rorug03G0068100
rosa_samantha	Rh3AG125200 Rh3BG129500 Rh3CG132000 Rh3DG130500
rosa_wichuraiana	Rw3G010580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2103
Acc65I	GGTACC	1 cut(s)	1113
AccB1I	GGYRCC	1 cut(s)	1113
AccBSI	CCGCTC	1 cut(s)	1323
AccII	CGCG	8 cut(s)	366, 1049, 1098, 1488, 1524, 1545, 1566, 1580
AclWI	GGATC	3 cut(s)	913, 1001, 1526
AcoI	YGGCCR	3 cut(s)	367, 909, 1754
AcsI	RAATTY	3 cut(s)	79, 1203, 1390
AcuI	CTGAAG	1 cut(s)	474
AcyI	GRCGYC	2 cut(s)	1583, 2066
AfaI	GTAC	3 cut(s)	1115, 2148, 2159
AfiI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1011, 1253
AflII	CTTAAG	2 cut(s)	200, 881
AflIII	ACRYGT	1 cut(s)	1912
AgsI	TTSAA	6 cut(s)	138, 214, 394, 734, 748, 1804
AjnI	CCWGG	3 cut(s)	1252, 1298, 1646
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	5 cut(s)	392, 443, 789, 1496, 1566
AlwI	GGATC	3 cut(s)	913, 1001, 1526
Ama87I	CYCGRG	1 cut(s)	1072
ApaI	GGGCCC	1 cut(s)	483
ApeKI	GCWGC	3 cut(s)	34, 194, 437
ApoI	RAATTY	3 cut(s)	79, 1203, 1390
Asp718I	GGTACC	1 cut(s)	1113
AspLEI	GCGC	4 cut(s)	894, 1100, 1308, 2015
AsuC2I	CCSGG	4 cut(s)	442, 478, 1012, 1247
AsuHPI	GGTGA	2 cut(s)	76, 2016
AsuII	TTCGAA	1 cut(s)	1388
AvaI	CYCGRG	1 cut(s)	1072
AvaII	GGWCC	6 cut(s)	16, 500, 760, 1243, 1264, 1318
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	1113
BanII	GRGCYC	2 cut(s)	282, 483
BarI	GAAGNNNNNNTAC	2 cut(s)	666, 698
BbsI	GAAGAC	8 cut(s)	540, 546, 552, 558, 564, 681, 747, 1346
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	3 cut(s)	46, 181, 424
BccI	CCATC	3 cut(s)	1340, 1507, 2141
BceAI	ACGGC	4 cut(s)	107, 913, 994, 1359
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	3 cut(s)	1254, 1300, 1648
BcnI	CCSGG	4 cut(s)	442, 478, 1012, 1247
BcoDI	GTCTC	5 cut(s)	392, 443, 789, 1496, 1566
BfaI	CTAG	3 cut(s)	243, 1629, 1836
BfmI	CTRYAG	1 cut(s)	854
BfrI	CTTAAG	2 cut(s)	200, 881
BfuAI	ACCTGC	1 cut(s)	2103
BglI	GCCNNNNNGGC	2 cut(s)	203, 937
BglII	AGATCT	1 cut(s)	769
Bme1390I	CCNGG	7 cut(s)	442, 478, 1012, 1247, 1254, 1300, 1648
Bme18I	GGWCC	6 cut(s)	16, 500, 760, 1243, 1264, 1318
BmeT110I	CYCGRG	1 cut(s)	1072
BmiI	GGNNCC	8 cut(s)	18, 238, 481, 1115, 1218, 1245, 1251, 1446
BmrFI	CCNGG	7 cut(s)	442, 478, 1012, 1247, 1254, 1300, 1648
BmrI	ACTGGG	1 cut(s)	952
BmsI	GCATC	3 cut(s)	1015, 1159, 1186
BmuI	ACTGGG	1 cut(s)	952
BoxI	GACNNNNGTC	2 cut(s)	455, 1050
BpiI	GAAGAC	8 cut(s)	540, 546, 552, 558, 564, 681, 747, 1346
BpmI	CTGGAG	2 cut(s)	2018, 2104
Bpu10I	CCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	1388
BpuMI	CCSGG	4 cut(s)	442, 478, 1012, 1247
Bsa29I	ATCGAT	1 cut(s)	1194
BsaHI	GRCGYC	2 cut(s)	1583, 2066
BsaI	GGTCTC	2 cut(s)	789, 1496
BsaJI	CCNNGG	3 cut(s)	1010, 1426, 1578
BsaWI	WCCGGW	3 cut(s)	502, 1174, 1207
Bsc4I	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1011, 1253
Bse118I	RCCGGY	2 cut(s)	86, 812
Bse1I	ACTGG	1 cut(s)	958
Bse3DI	GCAATG	3 cut(s)	634, 914, 1936
BseBI	CCWGG	3 cut(s)	1254, 1300, 1648
BseCI	ATCGAT	1 cut(s)	1194
BseDI	CCNNGG	3 cut(s)	1010, 1426, 1578
BseGI	GGATG	4 cut(s)	1041, 1062, 1174, 1699
BseLI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1011, 1253
BseMI	GCAATG	3 cut(s)	634, 914, 1936
BseMII	CTCAG	5 cut(s)	267, 438, 794, 1353, 1754
BseNI	ACTGG	1 cut(s)	958
BseRI	GAGGAG	7 cut(s)	677, 1229, 1690, 1834, 2101, 2109, 2112
BseSI	GKGCMC	1 cut(s)	483
BseX3I	CGGCCG	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	46, 181, 424
BseYI	CCCAGC	2 cut(s)	8, 2102
Bsh1236I	CGCG	8 cut(s)	366, 1049, 1098, 1488, 1524, 1545, 1566, 1580
Bsh1285I	CGRYCG	5 cut(s)	64, 186, 370, 988, 995
BshNI	GGYRCC	1 cut(s)	1113
BshVI	ATCGAT	1 cut(s)	1194
BsiEI	CGRYCG	5 cut(s)	64, 186, 370, 988, 995
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	1072
BslFI	GGGAC	2 cut(s)	145, 1121
BslI	CCNNNNNNNGG	5 cut(s)	224, 227, 431, 1011, 1253
BsmAI	GTCTC	5 cut(s)	392, 443, 789, 1496, 1566
BsmFI	GGGAC	2 cut(s)	145, 1121
BsmI	GAATGC	2 cut(s)	1146, 1231
Bso31I	GGTCTC	2 cut(s)	789, 1496
BsoBI	CYCGRG	1 cut(s)	1072
Bsp119I	TTCGAA	1 cut(s)	1388
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	282, 483
Bsp143I	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
Bsp19I	CCATGG	1 cut(s)	1426
BspCNI	CTCAG	5 cut(s)	268, 439, 793, 1354, 1755
BspDI	ATCGAT	1 cut(s)	1194
BspFNI	CGCG	8 cut(s)	366, 1049, 1098, 1488, 1524, 1545, 1566, 1580
BspLI	GGNNCC	8 cut(s)	18, 238, 481, 1115, 1218, 1245, 1251, 1446
BspMAI	CTGCAG	1 cut(s)	858
BspMI	ACCTGC	1 cut(s)	2103
BspPI	GGATC	3 cut(s)	913, 1001, 1526
BspQI	GCTCTTC	1 cut(s)	2102
BspT104I	TTCGAA	1 cut(s)	1388
BspT107I	GGYRCC	1 cut(s)	1113
BspTI	CTTAAG	2 cut(s)	200, 881
BspTNI	GGTCTC	2 cut(s)	789, 1496
BsrBI	CCGCTC	1 cut(s)	1323
BsrDI	GCAATG	3 cut(s)	634, 914, 1936
BsrFI	RCCGGY	2 cut(s)	86, 812
BsrI	ACTGG	1 cut(s)	958
BssAI	RCCGGY	2 cut(s)	86, 812
BssECI	CCNNGG	3 cut(s)	1010, 1426, 1578
BssMI	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
BssNI	GRCGYC	2 cut(s)	1583, 2066
BssT1I	CCWWGG	1 cut(s)	1426
Bst2UI	CCWGG	3 cut(s)	1254, 1300, 1648
Bst4CI	ACNGT	1 cut(s)	945
BstACI	GRCGYC	2 cut(s)	1583, 2066
BstAFI	CTTAAG	2 cut(s)	200, 881
BstBI	TTCGAA	1 cut(s)	1388
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	6 cut(s)	276, 447, 472, 780, 1362, 1763
BstDSI	CCRYGG	2 cut(s)	1426, 1578
BstF5I	GGATG	4 cut(s)	1041, 1062, 1174, 1699
BstFNI	CGCG	8 cut(s)	366, 1049, 1098, 1488, 1524, 1545, 1566, 1580
BstHHI	GCGC	4 cut(s)	894, 1100, 1308, 2015
BstKTI	GATC	7 cut(s)	772, 810, 908, 969, 1009, 1453, 1534
BstMAI	GTCTC	5 cut(s)	392, 443, 789, 1496, 1566
BstMBI	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
BstMCI	CGRYCG	5 cut(s)	64, 186, 370, 988, 995
BstNI	CCWGG	3 cut(s)	1254, 1300, 1648
BstNSI	RCATGY	1 cut(s)	1916
BstPAI	GACNNNNGTC	2 cut(s)	455, 1050
BstSCI	CCNGG	7 cut(s)	440, 476, 1010, 1245, 1252, 1298, 1646
BstSFI	CTRYAG	1 cut(s)	854
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	8 cut(s)	366, 1049, 1098, 1488, 1524, 1545, 1566, 1580
BstV1I	GCAGC	3 cut(s)	46, 181, 424
BstV2I	GAAGAC	8 cut(s)	540, 546, 552, 558, 564, 681, 747, 1346
BstX2I	RGATCY	1 cut(s)	769
BstYI	RGATCY	1 cut(s)	769
BstZI	CGGCCG	1 cut(s)	367
Bsu15I	ATCGAT	1 cut(s)	1194
BsuTUI	ATCGAT	1 cut(s)	1194
BtgI	CCRYGG	2 cut(s)	1426, 1578
BtgZI	GCGATG	2 cut(s)	1503, 2119
BtsCI	GGATG	4 cut(s)	1041, 1062, 1174, 1699
BtsI	GCAGTG	1 cut(s)	1837
BtsIMutI	CAGTG	2 cut(s)	640, 1837
BveI	ACCTGC	1 cut(s)	2103
Cac8I	GCNNGC	1 cut(s)	625
CfoI	GCGC	4 cut(s)	894, 1100, 1308, 2015
Cfr10I	RCCGGY	2 cut(s)	86, 812
Cfr42I	CCGCGG	1 cut(s)	1581
ClaI	ATCGAT	1 cut(s)	1194
CseI	GACGC	4 cut(s)	785, 1055, 1572, 2074
Csp6I	GTAC	3 cut(s)	1114, 2147, 2158
CviAII	CATG	5 cut(s)	102, 1150, 1427, 1913, 2123
CviQI	GTAC	3 cut(s)	1114, 2147, 2158
DdeI	CTNAG	6 cut(s)	276, 447, 472, 780, 1362, 1763
DpnI	GATC	7 cut(s)	771, 809, 907, 968, 1008, 1452, 1533
DpnII	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
EaeI	YGGCCR	3 cut(s)	367, 909, 1754
EagI	CGGCCG	1 cut(s)	367
EciI	GGCGGA	3 cut(s)	272, 292, 918
Ecl136II	GAGCTC	1 cut(s)	280
EclXI	CGGCCG	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	1426
Eco147I	AGGCCT	2 cut(s)	1646, 1720
Eco24I	GRGCYC	2 cut(s)	282, 483
Eco31I	GGTCTC	2 cut(s)	789, 1496
Eco47I	GGWCC	6 cut(s)	16, 500, 760, 1243, 1264, 1318
Eco52I	CGGCCG	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	1072
EcoICRI	GAGCTC	1 cut(s)	280
EcoO109I	RGGNCCY	3 cut(s)	237, 480, 1243
EcoRI	GAATTC	1 cut(s)	1390
EcoRII	CCWGG	3 cut(s)	1252, 1298, 1646
EcoT14I	CCWWGG	1 cut(s)	1426
EcoT38I	GRGCYC	2 cut(s)	282, 483
ErhI	CCWWGG	1 cut(s)	1426
FaeI	CATG	5 cut(s)	105, 1153, 1430, 1916, 2126
FaqI	GGGAC	2 cut(s)	145, 1121
FatI	CATG	5 cut(s)	101, 1149, 1426, 1912, 2122
FauI	CCCGC	8 cut(s)	36, 227, 616, 1021, 1042, 1250, 1562, 1766
FokI	GGATG	4 cut(s)	1048, 1069, 1181, 1706
FriOI	GRGCYC	2 cut(s)	282, 483
FspBI	CTAG	3 cut(s)	243, 1629, 1836
GlaI	GCGC	4 cut(s)	893, 1099, 1307, 2014
GsaI	CCCAGC	2 cut(s)	12, 2106
GsuI	CTGGAG	2 cut(s)	2018, 2104
HgaI	GACGC	4 cut(s)	785, 1055, 1572, 2074
HhaI	GCGC	4 cut(s)	894, 1100, 1308, 2015
Hin1I	GRCGYC	2 cut(s)	1583, 2066
Hin1II	CATG	5 cut(s)	105, 1153, 1430, 1916, 2126
Hin6I	GCGC	4 cut(s)	892, 1098, 1306, 2013
HinP1I	GCGC	4 cut(s)	892, 1098, 1306, 2013
HindIII	AAGCTT	1 cut(s)	878
HphI	GGTGA	2 cut(s)	76, 2016
Hpy166II	GTNNAC	1 cut(s)	2147
Hpy8I	GTNNAC	1 cut(s)	2147
Hpy99I	CGWCG	9 cut(s)	362, 590, 614, 779, 926, 1049, 1070, 1091, 1588
HpyAV	CCTTC	7 cut(s)	144, 311, 751, 1119, 1626, 1965, 1975
HpyCH4III	ACNGT	1 cut(s)	945
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	130, 856, 1934, 2126
HpyF3I	CTNAG	6 cut(s)	276, 447, 472, 780, 1362, 1763
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	2 cut(s)	1583, 2066
Hsp92II	CATG	5 cut(s)	105, 1153, 1430, 1916, 2126
HspAI	GCGC	4 cut(s)	892, 1098, 1306, 2013
KpnI	GGTACC	1 cut(s)	1117
KspI	CCGCGG	1 cut(s)	1581
Kzo9I	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
LguI	GCTCTTC	1 cut(s)	2102
Lsp1109I	GCAGC	3 cut(s)	46, 181, 424
LweI	GCATC	3 cut(s)	1015, 1159, 1186
MaeI	CTAG	3 cut(s)	243, 1629, 1836
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	1038
MalI	GATC	7 cut(s)	771, 809, 907, 968, 1008, 1452, 1533
MbiI	CCGCTC	1 cut(s)	1323
MboI	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	2 cut(s)	282, 483
MluCI	AATT	5 cut(s)	79, 728, 1119, 1203, 1390
MlyI	GAGTC	7 cut(s)	111, 521, 1283, 1321, 1466, 1757, 2040
MmeI	TCCRAC	7 cut(s)	489, 633, 942, 1013, 1034, 1350, 1820
MseI	TTAA	3 cut(s)	201, 882, 1233
MslI	CAYNNNNRTG	1 cut(s)	1917
MspA1I	CMGCKG	3 cut(s)	194, 1580, 2082
MspCI	CTTAAG	2 cut(s)	200, 881
MspR9I	CCNGG	7 cut(s)	442, 478, 1012, 1247, 1254, 1300, 1648
Mva1269I	GAATGC	2 cut(s)	1146, 1231
MvaI	CCWGG	3 cut(s)	1254, 1300, 1648
MvnI	CGCG	8 cut(s)	366, 1049, 1098, 1488, 1524, 1545, 1566, 1580
NciI	CCSGG	4 cut(s)	442, 478, 1012, 1247
NcoI	CCATGG	1 cut(s)	1426
NdeII	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
NlaIII	CATG	5 cut(s)	105, 1153, 1430, 1916, 2126
NlaIV	GGNNCC	8 cut(s)	18, 238, 481, 1115, 1218, 1245, 1251, 1446
NmuCI	GTSAC	1 cut(s)	1038
NspI	RCATGY	1 cut(s)	1916
NspV	TTCGAA	1 cut(s)	1388
PceI	AGGCCT	2 cut(s)	1646, 1720
PciI	ACATGT	1 cut(s)	1912
PciSI	GCTCTTC	1 cut(s)	2102
PctI	GAATGC	2 cut(s)	1146, 1231
PfeI	GAWTC	9 cut(s)	4, 321, 1191, 1466, 1553, 1574, 2005, 2029, 2119
PleI	GAGTC	7 cut(s)	111, 520, 1283, 1320, 1465, 1756, 2040
PpsI	GAGTC	7 cut(s)	111, 520, 1283, 1320, 1465, 1756, 2040
PpuMI	RGGWCCY	1 cut(s)	1243
PscI	ACATGT	1 cut(s)	1912
PshAI	GACNNNNGTC	2 cut(s)	455, 1050
Psp124BI	GAGCTC	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	1243
Psp6I	CCWGG	3 cut(s)	1252, 1298, 1646
PspFI	CCCAGC	2 cut(s)	8, 2102
PspGI	CCWGG	3 cut(s)	1252, 1298, 1646
PspN4I	GGNNCC	8 cut(s)	18, 238, 481, 1115, 1218, 1245, 1251, 1446
PspOMI	GGGCCC	1 cut(s)	479
PspPPI	RGGWCCY	1 cut(s)	1243
PstI	CTGCAG	1 cut(s)	858
PsuI	RGATCY	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	2082
RsaI	GTAC	3 cut(s)	1115, 2148, 2159
RsaNI	GTAC	3 cut(s)	1114, 2147, 2158
RseI	CAYNNNNRTG	1 cut(s)	1917
SacI	GAGCTC	1 cut(s)	282
SacII	CCGCGG	1 cut(s)	1581
SapI	GCTCTTC	1 cut(s)	2102
SaqAI	TTAA	3 cut(s)	201, 882, 1233
Sau3AI	GATC	7 cut(s)	769, 807, 905, 966, 1006, 1450, 1531
SchI	GAGTC	7 cut(s)	111, 521, 1283, 1321, 1466, 1757, 2040
ScrFI	CCNGG	7 cut(s)	442, 478, 1012, 1247, 1254, 1300, 1648
SduI	GDGCHC	2 cut(s)	282, 483
SfaNI	GCATC	3 cut(s)	1015, 1159, 1186
SfcI	CTRYAG	1 cut(s)	854
Sfr303I	CCGCGG	1 cut(s)	1581
SfuI	TTCGAA	1 cut(s)	1388
SgrBI	CCGCGG	1 cut(s)	1581
SinI	GGWCC	6 cut(s)	16, 500, 760, 1243, 1264, 1318
SmiMI	CAYNNNNRTG	1 cut(s)	1917
SmlI	CTYRAG	2 cut(s)	200, 881
SmoI	CTYRAG	2 cut(s)	200, 881
Sse9I	AATT	5 cut(s)	79, 728, 1119, 1203, 1390
SseBI	AGGCCT	2 cut(s)	1646, 1720
SspMI	CTAG	3 cut(s)	243, 1629, 1836
SstI	GAGCTC	1 cut(s)	282
StuI	AGGCCT	2 cut(s)	1646, 1720
StyD4I	CCNGG	7 cut(s)	440, 476, 1010, 1245, 1252, 1298, 1646
StyI	CCWWGG	1 cut(s)	1426
TaaI	ACNGT	1 cut(s)	945
TaiI	ACGT	1 cut(s)	363
TaqII	GACCGA	2 cut(s)	974, 1252
TasI	AATT	5 cut(s)	79, 728, 1119, 1203, 1390
TatI	WGTACW	2 cut(s)	2146, 2157
TfiI	GAWTC	9 cut(s)	4, 321, 1191, 1466, 1553, 1574, 2005, 2029, 2119
Tru1I	TTAA	3 cut(s)	201, 882, 1233
Tru9I	TTAA	3 cut(s)	201, 882, 1233
TscAI	CASTG	2 cut(s)	640, 1837
TseFI	GTSAC	1 cut(s)	1038
TseI	GCWGC	3 cut(s)	34, 194, 437
Tsp45I	GTSAC	1 cut(s)	1038
TspDTI	ATGAA	6 cut(s)	17, 770, 1238, 1391, 1654, 1713
TspGWI	ACGGA	2 cut(s)	29, 603
TspRI	CASTG	2 cut(s)	640, 1837
Vha464I	CTTAAG	2 cut(s)	200, 881
VpaK11BI	GGWCC	6 cut(s)	16, 500, 760, 1243, 1264, 1318
XapI	RAATTY	3 cut(s)	79, 1203, 1390
XbaI	TCTAGA	1 cut(s)	1628
XceI	RCATGY	1 cut(s)	1916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1156
XspI	CTAG	3 cut(s)	243, 1629, 1836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.