Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005642

Physical Location & Seq

Genomic Coordinates Forward (+)

44736439 .. 44738197

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00423700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGCACAAGGGGCATTCTGCATGCCATGAATGGCAATGGTGTCTCATCTGATGAAGTCATTGCGAAGCTGCTTGAAATGGGTTTCGAGAATTCCAGTGCCGTAGAGGCTGTAAAAGAAGTAGGGCCATCATTTGATGATGCATTGGAGTTTATATTGAATGGTTGTTGTAGAAGCAATCAGAGAGCATTGAGTAGTTCTAGATGTTCTACAAGCCAGGCAAAGGCTCCAGGGAAAAGAGCTTTGCCCTCCTCAAAACCATTGGGTCAAATTCGGCAGTCTAGCATACTGGACCATTTCCAATCCTCGAGTGGACCTAAGCAGAGGAGGACTCATGTGTTACCTGATGTGCCTGTATCAGAAATGGTGCATGTAGCACAATGTGTAAAACCTCTTTCTGGTGTGGATAGCATTGAAGTTTTATTAGAATCATCTCTGGTTGATTGCCTTGACATTCGATCAGATTGGGAGAAGAAAGTCAGCAGTCTCTTGCGAAAGCATTTTGGTTTTCTATCATTAAAACCTTTCCAGAAGGAGGTCTTAGCTGCTTGGTTGGCTCACCAAGATACACTTGTTCTTGCTGCAACAGGATCTGGAAAATCTTTGTGCTTCCAGATTCCAGCATTGTTGACAGGGAAAGTGGTTGTTGTGATTTCACCATTGATAAGCTTGATGCACGATCAGTGCTTAAAGCTGGCAAAACATGGGGTTTCTGCTTGCTTTCTTGGATCTGGACAACCTGATAGTACTGTGGAAAATAAAGCAATGAGAGGCATGTACAACATAATATACGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACTCCAAAAGTTGACAGAAATACGTGGGATTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTCGGCCTGACTACAGGTTTGTCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

312

Amino Acids

34.15

Weight (kDa)

8.77

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	175 - 309	1.5e-22	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680
fragaria_vesca	FvH4_6g06440 FvH4_6g06440 FvH4_6g06440 FvH4_6g06440
malus_domestica	MD04G1201600.v1.1
prunus_persica	Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1
pyrus_communis	pycom04g17780
rosa_chinensis	RchiOBHm_Chr3g0455521
rosa_laevigata	RLG00000025352
rosa_multiflora	Rmu_sc0005164.1_g000005 Rmu_sc0010428.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423700 Rroxscaffold_6G00424190
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067700 Rh3BG070300 Rh3CG068600 Rh3DG070200
rosa_wichuraiana	Rw3G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	598, 736
AcsI	RAATTY	2 cut(s)	91, 270
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	748, 779
AfiI	CCNNNNNNNGG	3 cut(s)	223, 398, 535
AgsI	TTSAA	4 cut(s)	77, 160, 416, 894
AjnI	CCWGG	2 cut(s)	216, 229
AluBI	AGCT	5 cut(s)	70, 242, 545, 669, 694
AluI	AGCT	5 cut(s)	70, 242, 545, 669, 694
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	3 cut(s)	49, 491, 797
AlwI	GGATC	2 cut(s)	598, 736
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	3 cut(s)	125, 901, 914
ApeKI	GCWGC	3 cut(s)	70, 545, 581
ApoI	RAATTY	2 cut(s)	91, 270
ArsI	GACNNNNNNTTYG	1 cut(s)	911
AspS9I	GGNCC	4 cut(s)	125, 292, 314, 901
AsuHPI	GGTGA	2 cut(s)	551, 648
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	2 cut(s)	292, 314
BaeI	ACNNNNGTAYC	2 cut(s)	558, 591
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	57, 532, 568
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	218, 231
BcoDI	GTCTC	3 cut(s)	49, 491, 797
BfaI	CTAG	2 cut(s)	201, 282
BfmI	CTRYAG	1 cut(s)	922
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	3 cut(s)	71, 546, 582
BlsI	GCNGC	3 cut(s)	72, 547, 583
BmcAI	AGTACT	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	218, 231
Bme18I	GGWCC	2 cut(s)	292, 314
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	4 cut(s)	125, 292, 314, 901
BmiI	GGNNCC	2 cut(s)	228, 902
BmrFI	CCNGG	2 cut(s)	218, 231
BmsI	GCATC	2 cut(s)	130, 663
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	851
BsaJI	CCNNGG	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 398, 535
Bse1I	ACTGG	2 cut(s)	96, 294
Bse3DI	GCAATG	3 cut(s)	43, 60, 771
BseBI	CCWGG	2 cut(s)	218, 231
BseDI	CCNNGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	3 cut(s)	223, 398, 535
BseMI	GCAATG	3 cut(s)	43, 60, 771
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	2 cut(s)	96, 294
BseRI	GAGGAG	2 cut(s)	241, 340
BseXI	GCAGC	3 cut(s)	57, 532, 568
BshFI	GGCC	3 cut(s)	127, 903, 916
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	223, 398, 535
BsmAI	GTCTC	3 cut(s)	49, 491, 797
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	3 cut(s)	127, 903, 916
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	777
Bsp143I	GATC	4 cut(s)	458, 590, 679, 728
BspANI	GGCC	3 cut(s)	127, 903, 916
BspCNI	CTCAG	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	228, 902
BspPI	GGATC	2 cut(s)	598, 736
BsrDI	GCAATG	3 cut(s)	43, 60, 771
BsrGI	TGTACA	1 cut(s)	777
BsrI	ACTGG	2 cut(s)	96, 294
BssECI	CCNNGG	1 cut(s)	230
BssMI	GATC	4 cut(s)	458, 590, 679, 728
Bst2UI	CCWGG	2 cut(s)	218, 231
Bst4CI	ACNGT	1 cut(s)	751
BstAUI	TGTACA	1 cut(s)	777
BstBAI	YACGTR	1 cut(s)	851
BstC8I	GCNNGC	3 cut(s)	24, 696, 718
BstDEI	CTNAG	3 cut(s)	318, 541, 801
BstKTI	GATC	4 cut(s)	461, 593, 682, 731
BstMAI	GTCTC	3 cut(s)	49, 491, 797
BstMBI	GATC	4 cut(s)	458, 590, 679, 728
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 107, 554, 866
BstNI	CCWGG	2 cut(s)	218, 231
BstNSI	RCATGY	3 cut(s)	26, 374, 778
BstSCI	CCNGG	2 cut(s)	216, 229
BstSFI	CTRYAG	1 cut(s)	922
BstV1I	GCAGC	3 cut(s)	57, 532, 568
BstX2I	RGATCY	2 cut(s)	590, 728
BstYI	RGATCY	2 cut(s)	590, 728
BsuRI	GGCC	3 cut(s)	127, 903, 916
BtsIMutI	CAGTG	2 cut(s)	103, 689
Cac8I	GCNNGC	3 cut(s)	24, 696, 718
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	4 cut(s)	125, 292, 314, 901
Csp6I	GTAC	2 cut(s)	747, 778
CviAII	CATG	7 cut(s)	23, 28, 335, 371, 704, 775, 905
CviQI	GTAC	2 cut(s)	747, 778
DdeI	CTNAG	3 cut(s)	318, 541, 801
DpnI	GATC	4 cut(s)	460, 592, 681, 730
DpnII	GATC	4 cut(s)	458, 590, 679, 728
DraIII	CACNNNGTG	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	292, 314
Eco88I	CYCGRG	1 cut(s)	307
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	216, 229
EcoT22I	ATGCAT	1 cut(s)	145
FaeI	CATG	7 cut(s)	26, 31, 338, 374, 707, 778, 908
FalI	AAGNNNNNCTT	4 cut(s)	524, 556, 555, 587
FatI	CATG	7 cut(s)	22, 27, 334, 370, 703, 774, 904
Fnu4HI	GCNGC	3 cut(s)	71, 546, 582
Fsp4HI	GCNGC	3 cut(s)	71, 546, 582
FspBI	CTAG	2 cut(s)	201, 282
GluI	GCNGC	3 cut(s)	71, 546, 582
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	3 cut(s)	127, 903, 916
Hin1II	CATG	7 cut(s)	26, 31, 338, 374, 707, 778, 908
HincII	GTYRAC	2 cut(s)	630, 840
HindII	GTYRAC	2 cut(s)	630, 840
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	3 cut(s)	331, 428, 616
HphI	GGTGA	2 cut(s)	551, 648
Hpy166II	GTNNAC	3 cut(s)	314, 630, 840
Hpy188I	TCNGA	5 cut(s)	52, 183, 361, 463, 935
Hpy188III	TCNNGA	6 cut(s)	88, 201, 529, 594, 613, 732
Hpy8I	GTNNAC	3 cut(s)	314, 630, 840
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	1 cut(s)	751
HpyCH4IV	ACGT	2 cut(s)	792, 850
HpyCH4V	TGCA	7 cut(s)	22, 143, 370, 584, 676, 869, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 107, 554, 866
HpyF3I	CTNAG	3 cut(s)	318, 541, 801
HpySE526I	ACGT	2 cut(s)	792, 850
Hsp92II	CATG	7 cut(s)	26, 31, 338, 374, 707, 778, 908
Kzo9I	GATC	4 cut(s)	458, 590, 679, 728
LmnI	GCTCC	1 cut(s)	232
Lsp1109I	GCAGC	3 cut(s)	57, 532, 568
LweI	GCATC	2 cut(s)	130, 663
MaeI	CTAG	2 cut(s)	201, 282
MaeII	ACGT	2 cut(s)	792, 850
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	4 cut(s)	460, 592, 681, 730
MboI	GATC	4 cut(s)	458, 590, 679, 728
MboII	GAAGA	1 cut(s)	484
MfeI	CAATTG	1 cut(s)	870
MflI	RGATCY	2 cut(s)	590, 728
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	3 cut(s)	91, 270, 870
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	9 cut(s)	100, 259, 262, 316, 318, 321, 402, 529, 764
Mph1103I	ATGCAT	1 cut(s)	145
MseI	TTAA	3 cut(s)	518, 689, 812
MspR9I	CCNGG	2 cut(s)	218, 231
MunI	CAATTG	1 cut(s)	870
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	218, 231
MwoI	GCNNNNNNNGC	4 cut(s)	12, 107, 554, 866
NdeII	GATC	4 cut(s)	458, 590, 679, 728
NlaIII	CATG	7 cut(s)	26, 31, 338, 374, 707, 778, 908
NlaIV	GGNNCC	2 cut(s)	228, 902
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	3 cut(s)	26, 374, 778
PaeI	GCATGC	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	307
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	428, 616
PkrI	GCNGC	3 cut(s)	72, 547, 583
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	851
Psp6I	CCWGG	2 cut(s)	216, 229
PspGI	CCWGG	2 cut(s)	216, 229
PspN4I	GGNNCC	2 cut(s)	228, 902
PspPI	GGNCC	4 cut(s)	125, 292, 314, 901
PspXI	VCTCGAGB	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	593
PsuI	RGATCY	2 cut(s)	590, 728
RsaI	GTAC	2 cut(s)	748, 779
RsaNI	GTAC	2 cut(s)	747, 778
SaqAI	TTAA	3 cut(s)	518, 689, 812
SatI	GCNGC	3 cut(s)	71, 546, 582
Sau3AI	GATC	4 cut(s)	458, 590, 679, 728
Sau96I	GGNCC	4 cut(s)	125, 292, 314, 901
ScaI	AGTACT	1 cut(s)	748
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	218, 231
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	130, 663
SfcI	CTRYAG	1 cut(s)	922
Sfr274I	CTCGAG	1 cut(s)	307
SinI	GGWCC	2 cut(s)	292, 314
SlaI	CTCGAG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	26
Sse9I	AATT	3 cut(s)	91, 270, 870
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	2 cut(s)	201, 282
StyD4I	CCNGG	2 cut(s)	216, 229
TaaI	ACNGT	1 cut(s)	751
TaiI	ACGT	2 cut(s)	795, 853
TaqI	TCGA	3 cut(s)	87, 308, 457
TasI	AATT	3 cut(s)	91, 270, 870
TatI	WGTACW	2 cut(s)	746, 777
TfiI	GAWTC	2 cut(s)	428, 616
Tru1I	TTAA	3 cut(s)	518, 689, 812
Tru9I	TTAA	3 cut(s)	518, 689, 812
TscAI	CASTG	2 cut(s)	103, 689
TseI	GCWGC	3 cut(s)	70, 545, 581
TspDTI	ATGAA	3 cut(s)	44, 69, 891
TspRI	CASTG	2 cut(s)	103, 689
VpaK11BI	GGWCC	2 cut(s)	292, 314
XapI	RAATTY	2 cut(s)	91, 270
XbaI	TCTAGA	1 cut(s)	200
XceI	RCATGY	3 cut(s)	26, 374, 778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XhoI	CTCGAG	1 cut(s)	307
XspI	CTAG	2 cut(s)	201, 282
ZrmI	AGTACT	1 cut(s)	748
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.