Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005642

Physical Location & Seq

Genomic Coordinates Reverse (-)

4704182 .. 4710695

Gene Structure 6514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG067700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2196 bp

ATGAATGGCAATGGTGTCTCATCTGATGAAGTCATTGCGAAGCTGCTTGAAATGGGTTTCGAGAATTCCAGTGCCGTAGAGGCTGTAAAAGAAGTAGGGCCATCATTTGATGATGCATTGGAGTTTATATTGAATGGTTGTTGTAGAAGCAATCAGAGAGCATTGAGTAGTTCTAGATCTTCTACAAGCCAGGCAAAGGCTCCAGGGAAAAGAGCTTTGCCCTCCTCAAAACCATTGGGTCAAATTCGGCAGTCTAGCATACGGGACCATTTCCAATCCTCGAGTGGACCTAAGCGGAGGAGGACTCATGTGTTACCTGATGTACCTGTATCAGAAATGGTGCGTGGTCCTGTAGAACAATGTGTGGAACCTCTTTCTGGTGTGGATAGCATTGAAGTTTTATCAGAATCATCTCTGGTTGATTGCCTTGACATTCGATCAGATTGGGAGAAGAAAGTCAGCAGTCTCTTGCAAAAGCATTTTGGTTTTCTATCATTAAAACCTTTCCAGAAGGAGGTCTTAGCTGCTTGGTTGGCTCACCAAGATACACTTGTTCTTGCTGCTACAGGATCTGGAAAATCTTTGTGCTTCCAGATTCCAGCATTGTTGACAGGGAAAGTGGTTGTTGTGATTTCACCATTGATAAGCTTGATGCATGATCAGTGCTTAAAGCTGGCAAAACATGGGGTTTCTGCTTGCTTTCTTGGATCTGGACAACCTGATAGTACTGTGGAAAATAAAGCAATGAGAGGCATGTACAACATAATATATGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACTCCAAAAGTTGGCAGAAATACGTGGGATTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTCGGCCTGACTACAGGAGATTGTCTGAGTTGCGAAAGAACTTCAGTGCTAGCAATTTAAAATTCTTAAAATTCGATATACCACTGATGGCATTAACTGCTACTGCCACAATTCAGGTTCGTGAAGATATTCTTAAGTCATTGTCCATGTCAAAGGAAACAAAAGTTGTGCTTACTTCATTTTTCCGGCCGAATCTAAGGTTCAGGGTACAGCATAGTAGAACATCAACATCATCATATGAGAATGATTTTTATGACTTGATAGACATGTATACGGGCAAGAGAGGAAAAGGTGAAAAGAAACAAATGATCATCTCAGAAGAAGTAAACGAAGTGCTGGACAGCTCATCTAACAGTAGTATGTCAGAGGCTGATTGCATTTCAGAGCATGATTTGGACAATATCGAGGATGGTAATTCCGACAGATATGATGAAGCAAGTTCACTCCAGGAAAATGGTTCAAGTGCTTCAAAGGGAAGGGAGCTGTCAGTTGACTACTTGGAAAATGATGTTGACATCTTTCAGAGTGTTAATGATTGGGATGTTAGCTGTGGTGAATTCTGTGGACTACCTCTTTGTGAGGACTTGAATACTAGAAAAGAAACTACATCGGAGGTACTTGATCCGCTGAGTCAACCAGAAGAAAGACTGAGACTTCTGCAACAGCCCCTAGAGAAAGGATCAACTATCATATATGTTCCTACGAGAAAACAAACGTTGAAAATTGCAACTTATCTTTCCAAGTGTGGAGTGAAGGCTGCTGCCTATAATGCAGGGTTGCCAAAATCACGTCTGAGGCAGGTCCACAAGATGTTTCATGAAAATACATTAGAGGTTGTTGTGGCAACAATTGCTTTTGGAATGGGAATTGACAAGTTAAATGTCCGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCATACTATCAAGAAGCTGGTCGAGCGGGAAGGGATGGAAAATTAGCTGACTGCATTTTATTTGCAAACCTAACAAGACCACCATCACTTTTACCGAGTCGAAGAAGTGAAGAGCAGACAAAGCAAGCATATAAAATGTTGTCTGATTGTTTCAGGTATGGAATGACTTCCTCATGCTGTCGGGCTAAAAAACTTGTGGAGTACTTTGGGGAGGATTTCAGTTATGAGAAGTGTCTCTCGTGTGATGTCTGTGTTAACGGACCTCCAGAAATGCAGAATTTCAGAAAGGAGGCAGATGTCTTGATGCAGGTTATTGCTGCTCAAAATGTAAGTATGCTGTATTTGAAAGTTTCTTGGGTTCAAGGTCACATTAATTATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

731

Amino Acids

81.61

Weight (kDa)

6.72

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	168 - 337	6.8e-25	DEAD/DEAH box helicase
Helicase_C	PF00271	518 - 617	7e-16	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	638 - 688	8.1e-09	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680
fragaria_vesca	FvH4_6g06440 FvH4_6g06440 FvH4_6g06440 FvH4_6g06440
malus_domestica	MD04G1201600.v1.1
prunus_persica	Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1
pyrus_communis	pycom04g17780
rosa_chinensis	RchiOBHm_Chr3g0455521
rosa_laevigata	RLG00000025352
rosa_multiflora	Rmu_sc0005164.1_g000005 Rmu_sc0010428.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423700 Rroxscaffold_6G00424190
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067700 Rh3BG070300 Rh3CG068600 Rh3DG070200
rosa_wichuraiana	Rw3G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1678, 2110
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	1838
AccI	GTMKAC	1 cut(s)	1160
AciI	CCGC	3 cut(s)	295, 1514, 1838
AclI	AACGTT	1 cut(s)	1604
AclWI	GGATC	4 cut(s)	577, 715, 1505, 1576
AcoI	YGGCCR	2 cut(s)	1076, 1796
AcsI	RAATTY	6 cut(s)	64, 243, 950, 959, 1445, 2089
AcuI	CTGAAG	1 cut(s)	916
AfaI	GTAC	6 cut(s)	324, 727, 758, 1098, 1506, 2015
AfiI	CCNNNNNNNGG	4 cut(s)	196, 377, 514, 817
AflII	CTTAAG	1 cut(s)	1022
AflIII	ACRYGT	1 cut(s)	1155
AjiI	CACGTC	1 cut(s)	1679
AjnI	CCWGG	3 cut(s)	189, 202, 1335
Alw26I	GTCTC	5 cut(s)	22, 470, 776, 1534, 2051
AlwI	GGATC	4 cut(s)	577, 715, 1505, 1576
AlwNI	CAGNNNCTG	2 cut(s)	572, 1259
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	5 cut(s)	98, 880, 893, 1076, 1796
ApeKI	GCWGC	6 cut(s)	43, 524, 560, 1646, 1649, 2129
ApoI	RAATTY	6 cut(s)	64, 243, 950, 959, 1445, 2089
ArsI	GACNNNNNNTTYG	2 cut(s)	1446, 1478
AseI	ATTAAT	1 cut(s)	2184
Asp700I	GAANNNNTTC	2 cut(s)	1017, 1978
AspS9I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
AsuHPI	GGTGA	4 cut(s)	530, 627, 1193, 1454
AsuNHI	GCTAGC	1 cut(s)	938
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BalI	TGGCCA	1 cut(s)	1798
BauI	CACGAG	1 cut(s)	2050
BbvI	GCAGC	6 cut(s)	30, 511, 547, 1633, 1636, 2116
BccI	CCATC	5 cut(s)	109, 970, 1292, 1841, 1903
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	3 cut(s)	191, 204, 1337
BclI	TGATCA	2 cut(s)	658, 1197
BcoDI	GTCTC	5 cut(s)	22, 470, 776, 1534, 2051
BfaI	CTAG	5 cut(s)	174, 255, 939, 1482, 1559
BfmI	CTRYAG	3 cut(s)	351, 564, 901
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	2 cut(s)	1678, 2110
BglI	GCCNNNNNGGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	6 cut(s)	44, 525, 561, 1647, 1650, 2130
BlsI	GCNGC	6 cut(s)	45, 526, 562, 1648, 1651, 2131
BmcAI	AGTACT	2 cut(s)	727, 2015
Bme1390I	CCNGG	3 cut(s)	191, 204, 1337
Bme18I	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
BmeT110I	CYCGRG	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	1679
BmgT120I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
BmiI	GGNNCC	4 cut(s)	201, 266, 369, 881
BmrFI	CCNGG	3 cut(s)	191, 204, 1337
BmsI	GCATC	3 cut(s)	103, 642, 2106
BmtI	GCTAGC	1 cut(s)	942
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	3 cut(s)	186, 1319, 2061
Bpu10I	CCTNAGC	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	830
BsaJI	CCNNGG	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 377, 514, 817
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	3 cut(s)	16, 33, 750
BseBI	CCWGG	3 cut(s)	191, 204, 1337
BseDI	CCNNGG	1 cut(s)	203
BseGI	GGATG	4 cut(s)	1303, 1435, 1782, 1852
BseLI	CCNNNNNNNGG	4 cut(s)	196, 377, 514, 817
BseMI	GCAATG	3 cut(s)	16, 33, 750
BseMII	CTCAG	6 cut(s)	771, 906, 1218, 1508, 1529, 1673
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	214, 313
BseX3I	CGGCCG	1 cut(s)	1076
BseXI	GCAGC	6 cut(s)	30, 511, 547, 1633, 1636, 2116
Bsh1285I	CGRYCG	1 cut(s)	1079
BshFI	GGCC	5 cut(s)	100, 882, 895, 1078, 1798
BsiEI	CGRYCG	1 cut(s)	1079
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	1075
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	4 cut(s)	196, 377, 514, 817
BsmAI	GTCTC	5 cut(s)	22, 470, 776, 1534, 2051
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	5 cut(s)	100, 882, 895, 1078, 1798
BsoBI	CYCGRG	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
BspACI	CCGC	3 cut(s)	295, 1514, 1838
BspANI	GGCC	5 cut(s)	100, 882, 895, 1078, 1798
BspCNI	CTCAG	6 cut(s)	772, 907, 1217, 1509, 1530, 1674
BspHI	TCATGA	1 cut(s)	1705
BspLI	GGNNCC	4 cut(s)	201, 266, 369, 881
BspMI	ACCTGC	2 cut(s)	1678, 2110
BspOI	GCTAGC	1 cut(s)	942
BspPI	GGATC	4 cut(s)	577, 715, 1505, 1576
BspQI	GCTCTTC	1 cut(s)	1917
BspTI	CTTAAG	1 cut(s)	1022
BsrBI	CCGCTC	1 cut(s)	1838
BsrDI	GCAATG	3 cut(s)	16, 33, 750
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
BssNAI	GTATAC	1 cut(s)	1161
BssSI	CACGAG	1 cut(s)	2050
Bst1107I	GTATAC	1 cut(s)	1161
Bst2BI	CACGAG	1 cut(s)	2050
Bst2UI	CCWGG	3 cut(s)	191, 204, 1337
Bst4CI	ACNGT	2 cut(s)	730, 1244
Bst6I	CTCTTC	1 cut(s)	1917
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	2 cut(s)	986, 1739
BstAUI	TGTACA	1 cut(s)	756
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	4 cut(s)	675, 697, 940, 1938
BstDEI	CTNAG	9 cut(s)	291, 520, 780, 915, 1085, 1204, 1517, 1538, 1682
BstF5I	GGATG	4 cut(s)	1303, 1435, 1782, 1852
BstKTI	GATC	8 cut(s)	179, 440, 572, 661, 710, 1200, 1513, 1571
BstMAI	GTCTC	5 cut(s)	22, 470, 776, 1534, 2051
BstMBI	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
BstMCI	CGRYCG	1 cut(s)	1079
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 533, 845, 986, 1658, 1739, 1835, 1933
BstNI	CCWGG	3 cut(s)	191, 204, 1337
BstNSI	RCATGY	2 cut(s)	757, 1159
BstSCI	CCNGG	3 cut(s)	189, 202, 1335
BstSFI	CTRYAG	3 cut(s)	351, 564, 901
BstV1I	GCAGC	6 cut(s)	30, 511, 547, 1633, 1636, 2116
BstX2I	RGATCY	3 cut(s)	176, 569, 707
BstXI	CCANNNNNNTGG	1 cut(s)	1343
BstYI	RGATCY	3 cut(s)	176, 569, 707
BstZ17I	GTATAC	1 cut(s)	1161
BstZI	CGGCCG	1 cut(s)	1076
BsuRI	GGCC	5 cut(s)	100, 882, 895, 1078, 1798
BtrI	CACGTC	1 cut(s)	1679
BtsCI	GGATG	4 cut(s)	1303, 1435, 1782, 1852
BtsIMutI	CAGTG	4 cut(s)	76, 668, 940, 971
BveI	ACCTGC	2 cut(s)	1678, 2110
Cac8I	GCNNGC	4 cut(s)	675, 697, 940, 1938
CaiI	CAGNNNCTG	2 cut(s)	572, 1259
CciI	TCATGA	1 cut(s)	1705
Cfr13I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
Csp6I	GTAC	6 cut(s)	323, 726, 757, 1097, 1505, 2014
CspCI	CAANNNNNGTGG	4 cut(s)	1775, 1788, 1810, 1823
CviQI	GTAC	6 cut(s)	323, 726, 757, 1097, 1505, 2014
DdeI	CTNAG	9 cut(s)	291, 520, 780, 915, 1085, 1204, 1517, 1538, 1682
DpnI	GATC	8 cut(s)	178, 439, 571, 660, 709, 1199, 1512, 1570
DpnII	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	2 cut(s)	1076, 1796
EagI	CGGCCG	1 cut(s)	1076
Eam1104I	CTCTTC	1 cut(s)	1917
EarI	CTCTTC	1 cut(s)	1917
EclXI	CGGCCG	1 cut(s)	1076
Eco47I	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
Eco52I	CGGCCG	1 cut(s)	1076
Eco57I	CTGAAG	1 cut(s)	916
Eco88I	CYCGRG	1 cut(s)	280
EcoRI	GAATTC	2 cut(s)	64, 1445
EcoRII	CCWGG	3 cut(s)	189, 202, 1335
EcoT22I	ATGCAT	2 cut(s)	118, 657
FalI	AAGNNNNNCTT	8 cut(s)	503, 535, 534, 566, 1005, 1037, 1044, 1076
FaqI	GGGAC	1 cut(s)	278
FauI	CCCGC	1 cut(s)	1831
FauNDI	CATATG	1 cut(s)	1126
FbaI	TGATCA	2 cut(s)	658, 1197
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	6 cut(s)	44, 525, 561, 1647, 1650, 2130
FokI	GGATG	4 cut(s)	1310, 1442, 1769, 1859
Fsp4HI	GCNGC	6 cut(s)	44, 525, 561, 1647, 1650, 2130
FspBI	CTAG	5 cut(s)	174, 255, 939, 1482, 1559
GluI	GCNGC	6 cut(s)	44, 525, 561, 1647, 1650, 2130
GsuI	CTGGAG	3 cut(s)	186, 1319, 2061
HaeIII	GGCC	5 cut(s)	100, 882, 895, 1078, 1798
HapII	CCGG	1 cut(s)	1075
HincII	GTYRAC	5 cut(s)	609, 1381, 1402, 1523, 2068
HindII	GTYRAC	5 cut(s)	609, 1381, 1402, 1523, 2068
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	7 cut(s)	304, 407, 595, 1081, 1519, 1779, 1909
HpaI	GTTAAC	1 cut(s)	2068
HpaII	CCGG	1 cut(s)	1075
HphI	GGTGA	4 cut(s)	530, 627, 1193, 1454
HpyAV	CCTTC	4 cut(s)	505, 1359, 1636, 1836
HpyCH4III	ACNGT	2 cut(s)	730, 1244
HpyCH4IV	ACGT	3 cut(s)	829, 1604, 1678
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 533, 845, 986, 1658, 1739, 1835, 1933
HpyF3I	CTNAG	9 cut(s)	291, 520, 780, 915, 1085, 1204, 1517, 1538, 1682
HpySE526I	ACGT	3 cut(s)	829, 1604, 1678
Ksp22I	TGATCA	2 cut(s)	658, 1197
KspAI	GTTAAC	1 cut(s)	2068
Kzo9I	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
LguI	GCTCTTC	1 cut(s)	1917
LmnI	GCTCC	2 cut(s)	205, 1369
Lsp1109I	GCAGC	6 cut(s)	30, 511, 547, 1633, 1636, 2116
LweI	GCATC	3 cut(s)	103, 642, 2106
MaeI	CTAG	5 cut(s)	174, 255, 939, 1482, 1559
MaeII	ACGT	3 cut(s)	829, 1604, 1678
MaeIII	GTNAC	2 cut(s)	312, 2177
MalI	GATC	8 cut(s)	178, 439, 571, 660, 709, 1199, 1512, 1570
MbiI	CCGCTC	1 cut(s)	1838
MboI	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
MboII	GAAGA	8 cut(s)	171, 463, 1025, 1220, 1541, 1788, 1926, 1934
MfeI	CAATTG	2 cut(s)	849, 1737
MflI	RGATCY	3 cut(s)	176, 569, 707
MlsI	TGGCCA	1 cut(s)	1798
MluNI	TGGCCA	1 cut(s)	1798
MlyI	GAGTC	3 cut(s)	298, 1528, 1918
MmeI	TCCRAC	1 cut(s)	1332
Mox20I	TGGCCA	1 cut(s)	1798
Mph1103I	ATGCAT	2 cut(s)	118, 657
MroXI	GAANNNNTTC	2 cut(s)	1017, 1978
MscI	TGGCCA	1 cut(s)	1798
Msp20I	TGGCCA	1 cut(s)	1798
MspA1I	CMGCKG	1 cut(s)	1516
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	1075
MspR9I	CCNGG	3 cut(s)	191, 204, 1337
MunI	CAATTG	2 cut(s)	849, 1737
MvaI	CCWGG	3 cut(s)	191, 204, 1337
MwoI	GCNNNNNNNGC	8 cut(s)	80, 533, 845, 986, 1658, 1739, 1835, 1933
NdeI	CATATG	1 cut(s)	1126
NdeII	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
NheI	GCTAGC	1 cut(s)	938
NlaIV	GGNNCC	4 cut(s)	201, 266, 369, 881
NmuCI	GTSAC	1 cut(s)	2177
NsiI	ATGCAT	2 cut(s)	118, 657
NspI	RCATGY	2 cut(s)	757, 1159
PaeR7I	CTCGAG	1 cut(s)	280
PagI	TCATGA	1 cut(s)	1705
PciI	ACATGT	1 cut(s)	1155
PciSI	GCTCTTC	1 cut(s)	1917
PdmI	GAANNNNTTC	2 cut(s)	1017, 1978
PfeI	GAWTC	4 cut(s)	407, 595, 1081, 1779
PflMI	CCANNNNNTGG	1 cut(s)	817
PfoI	TCCNGGA	1 cut(s)	1335
PkrI	GCNGC	6 cut(s)	45, 526, 562, 1648, 1651, 2131
PleI	GAGTC	3 cut(s)	298, 1527, 1917
PpsI	GAGTC	3 cut(s)	298, 1527, 1917
Ppu21I	YACGTR	1 cut(s)	830
PscI	ACATGT	1 cut(s)	1155
PshBI	ATTAAT	1 cut(s)	2184
Psp1406I	AACGTT	1 cut(s)	1604
Psp6I	CCWGG	3 cut(s)	189, 202, 1335
PspGI	CCWGG	3 cut(s)	189, 202, 1335
PspN4I	GGNNCC	4 cut(s)	201, 266, 369, 881
PspPI	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
PspXI	VCTCGAGB	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	572, 1259
PsuI	RGATCY	3 cut(s)	176, 569, 707
RsaI	GTAC	6 cut(s)	324, 727, 758, 1098, 1506, 2015
RsaNI	GTAC	6 cut(s)	323, 726, 757, 1097, 1505, 2014
SapI	GCTCTTC	1 cut(s)	1917
SatI	GCNGC	6 cut(s)	44, 525, 561, 1647, 1650, 2130
Sau3AI	GATC	8 cut(s)	176, 437, 569, 658, 707, 1197, 1510, 1568
Sau96I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
ScaI	AGTACT	2 cut(s)	727, 2015
SchI	GAGTC	3 cut(s)	298, 1528, 1918
ScrFI	CCNGG	3 cut(s)	191, 204, 1337
SfaNI	GCATC	3 cut(s)	103, 642, 2106
SfcI	CTRYAG	3 cut(s)	351, 564, 901
Sfr274I	CTCGAG	1 cut(s)	280
SinI	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	280, 1022
SmoI	CTYRAG	2 cut(s)	280, 1022
SsiI	CCGC	3 cut(s)	295, 1514, 1838
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	5 cut(s)	174, 255, 939, 1482, 1559
StyD4I	CCNGG	3 cut(s)	189, 202, 1335
TaaI	ACNGT	2 cut(s)	730, 1244
TaiI	ACGT	3 cut(s)	832, 1607, 1681
TaqI	TCGA	7 cut(s)	60, 281, 436, 963, 1293, 1834, 1912
TatI	WGTACW	3 cut(s)	725, 756, 2013
TfiI	GAWTC	4 cut(s)	407, 595, 1081, 1779
TscAI	CASTG	4 cut(s)	76, 668, 940, 978
TseFI	GTSAC	1 cut(s)	2177
TseI	GCWGC	6 cut(s)	43, 524, 560, 1646, 1649, 2129
Tsp45I	GTSAC	1 cut(s)	2177
TspDTI	ATGAA	7 cut(s)	17, 42, 870, 1056, 1335, 1694, 1722
TspGWI	ACGGA	1 cut(s)	2085
TspRI	CASTG	4 cut(s)	76, 668, 940, 978
Van91I	CCANNNNNTGG	1 cut(s)	817
Vha464I	CTTAAG	1 cut(s)	1022
VpaK11BI	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
VspI	ATTAAT	1 cut(s)	2184
XapI	RAATTY	6 cut(s)	64, 243, 950, 959, 1445, 2089
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	2 cut(s)	757, 1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	1160
XmnI	GAANNNNTTC	2 cut(s)	1017, 1978
XspI	CTAG	5 cut(s)	174, 255, 939, 1482, 1559
ZrmI	AGTACT	2 cut(s)	727, 2015
Zsp2I	ATGCAT	2 cut(s)	118, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.