Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005642

Physical Location & Seq

Genomic Coordinates Reverse (-)

4704444 .. 4710142

Gene Structure 5699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG070300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGAATGGCAATGGTGTCTCATCTGATGAAGTCATTGCGAAGCTGCTTGAAATGGGTTTCGAGAATTCCAGTGCCGTAGAGGCTGTAAAAGAAGTAGGGCCATCATTTGATGATGCATTGGAGTTTATATTGAATGGTTGTTGTAGAAGCAATCAGAGAGCATTGAGTAGTTCTAGATCTTCTACAAGCCAGGCAAAGGCTCCAGGGAAAAGAGCTTTGCCCTCCTCAAAACCATTGGGTCAAATTCGGCAGTCTAGCATACGGGACCATTTCCAATCCTCGAGTGGACCTAAGCGGAGGAGGACTCATGTGTTACCTGATGTACCTGTATCAGAAATGGTGCGTGGTCCTGTAGAACAATGTGTGGAACCTCTTTCTGGTGTGGATAGCATTGAAGTTTTATCAGAATCATCTCTGGTTGATTGCCTTGACATTCGATCAGATTGGGAGAAGAAAGTCAGCAGTCTCTTGCAAAAGCATTTTGGTTTTCTATCATTAAAACCTTTCCAGAAGGAGGTCTTAGCTGCTTGGTTGGCTCACCAAGATACACTTGTTCTTGCTGCTACAGGATCTGGAAAATCTTTGTGCTTCCAGATTCCAGCATTGTTGACAGGGAAAGTGGTTGTTGTGATTTCACCATTGATAAGCTTGATGCATGATCAGTGCTTAAAGCTGGCAAAACATGGGGTTTCTGCTTGCTTTCTTGGATCTGGACAACCTGATAGTACTGTGGAAAATAAAGCAATGAGAGGCATGTACAACATAATATATGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACTCCAAAAGTTGGCAGAAATACGTGGGATTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTCGGCCTGACTACAGGAGATTGTCTGAGTTGCGAAAGAACTTCAGTGCTAGCAATTTAAAATTCTTAAAATTCGATATACCACTGATGGCATTAACTGCTACTGCCACAATTCAGGTTCGTGAAGATATTCTTAAGTCATTGTCCATGTCAAAGGAAACAAAAGTTGTGCTTACTTCATTTTTCCGGCCGAATCTAAGGTTCAGGGTTGTTGTGGCAACAATTGCTTTTGGAATGGGAATTGACAAGTTAAATGTCCGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCATACTATCAAGAAGCTGGTCGAGCGGGAAGGGATGGAAAATTAGCTGACTGCATTTTATTTGCAAACCTAACAAGACCACCATCACTTTTACCGAGTCGAAGAAGTGAAGAGCAGACAAAGCAAGCATATAAAATGTTGTCTGATTGTTTCAGGTATGGAATGACTTCCTCATGCTGTCGGGCTAAAAAACTTGTGGAGTACTTTGGGGAGGATTTCAGTTATGAGAAGTGTCTCTCGTGTGATGTCTGTGTTAACGGACCTCCAGAAATGCAGAATTTCAGAAAGGAGGCAGATGTCTTGATGCAGGTTATTGCTGCTCAAAATAGACAAAGCAGATACAGGAATGATTCATATGATGATGCCATGAGTAGTGATATTAGACGTGAGAGCTATATGGGGAGACTCAATCTCAGAATGATTGTCAGTAAAATAAGAGAGCAGTCCCAACAGTTCATGGCAACTGAGCTGCTTTGGTGGCAAGGTCTTCTCCGAATTATGGAAGGTAAAGGGTTCGTCAGAGAGGGAGATGATAAGAGACATGTTCAATTGAAGTTCCCCAAGCTAACAGAACTCGGCCTGGAGTTTCTGCGATCTGAAAAGGAGAAAACTTTCTATGTTCACCCTGAAGCTGATATGCTGCTCTCAAAAAGCATGCCCAAATCTTTCTCAACTTTCTCAGAGTGGGGAAAAGGCTGGGCTGATCCTGAGATTCGCCGCCAGCGGTTAGAGAGTTTTCGACACAACAGAAGCCCACAAAGCTCTTTTGGTAAAAGAGGAAAACGAAAATCACGAAAGAGAAAATCAAGTGCAAGTAGTCAAAGTGTTAGAACTGTTCGAGGTAGAATAGAGGCAAAACTCTCCAAACAAATTATCAGACCAAGGTCATCGAATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

694

Amino Acids

78.48

Weight (kDa)

9.62

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	168 - 337	6.2e-25	DEAD/DEAH box helicase
Helicase_C	PF00271	341 - 408	2.5e-09	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	429 - 479	7.5e-09	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680
fragaria_vesca	FvH4_6g06440 FvH4_6g06440 FvH4_6g06440 FvH4_6g06440
malus_domestica	MD04G1201600.v1.1
prunus_persica	Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1
pyrus_communis	pycom04g17780
rosa_chinensis	RchiOBHm_Chr3g0455521
rosa_laevigata	RLG00000025352
rosa_multiflora	Rmu_sc0005164.1_g000005 Rmu_sc0010428.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423700 Rroxscaffold_6G00424190
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067700 Rh3BG070300 Rh3CG068600 Rh3DG070200
rosa_wichuraiana	Rw3G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1483
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	1211
AciI	CCGC	4 cut(s)	295, 1211, 1903, 1909
AclWI	GGATC	3 cut(s)	577, 715, 1883
AcoI	YGGCCR	2 cut(s)	1076, 1169
AcsI	RAATTY	5 cut(s)	64, 243, 950, 959, 1462
AcuI	CTGAAG	2 cut(s)	916, 1833
AfaI	GTAC	4 cut(s)	324, 727, 758, 1388
AfiI	CCNNNNNNNGG	5 cut(s)	196, 377, 514, 817, 1684
AflII	CTTAAG	1 cut(s)	1022
AflIII	ACRYGT	1 cut(s)	1726
AgsI	TTSAA	6 cut(s)	50, 133, 395, 873, 1733, 1738
AjiI	CACGTC	1 cut(s)	1571
AjnI	CCWGG	3 cut(s)	189, 202, 1764
Alw26I	GTCTC	6 cut(s)	22, 470, 776, 1424, 1582, 1717
AlwI	GGATC	3 cut(s)	577, 715, 1883
AlwNI	CAGNNNCTG	1 cut(s)	572
Ama87I	CYCGRG	1 cut(s)	280
AoxI	GGCC	6 cut(s)	98, 880, 893, 1076, 1169, 1762
ApeKI	GCWGC	6 cut(s)	43, 524, 560, 1502, 1654, 1825
ApoI	RAATTY	5 cut(s)	64, 243, 950, 959, 1462
Asp700I	GAANNNNTTC	3 cut(s)	1017, 1351, 1796
AspS9I	GGNCC	6 cut(s)	98, 265, 287, 347, 880, 1445
AsuHPI	GGTGA	3 cut(s)	530, 627, 1799
AsuNHI	GCTAGC	1 cut(s)	938
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	4 cut(s)	265, 287, 347, 1445
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BalI	TGGCCA	1 cut(s)	1171
BauI	CACGAG	1 cut(s)	1423
BbsI	GAAGAC	1 cut(s)	1664
BbvI	GCAGC	6 cut(s)	30, 511, 547, 1489, 1641, 1812
BccI	CCATC	4 cut(s)	109, 970, 1214, 1276
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	3 cut(s)	191, 204, 1766
BclI	TGATCA	1 cut(s)	658
BcoDI	GTCTC	6 cut(s)	22, 470, 776, 1424, 1582, 1717
BfaI	CTAG	3 cut(s)	174, 255, 939
BfmI	CTRYAG	3 cut(s)	351, 564, 901
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	1483
BglI	GCCNNNNNGGC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	7 cut(s)	44, 525, 561, 1503, 1655, 1826, 1903
BlsI	GCNGC	7 cut(s)	45, 526, 562, 1504, 1656, 1827, 1904
BmcAI	AGTACT	2 cut(s)	727, 1388
Bme1390I	CCNGG	3 cut(s)	191, 204, 1766
Bme18I	GGWCC	4 cut(s)	265, 287, 347, 1445
BmeT110I	CYCGRG	1 cut(s)	280
BmgBI	CACGTC	1 cut(s)	1571
BmgT120I	GGNCC	6 cut(s)	98, 265, 287, 347, 880, 1445
BmiI	GGNNCC	4 cut(s)	201, 266, 369, 881
BmrFI	CCNGG	3 cut(s)	191, 204, 1766
BmsI	GCATC	4 cut(s)	103, 642, 1479, 1537
BmtI	GCTAGC	1 cut(s)	942
BoxI	GACNNNNGTC	1 cut(s)	2068
BpiI	GAAGAC	1 cut(s)	1664
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	3 cut(s)	186, 1434, 1787
Bpu10I	CCTNAGC	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	203, 2066
Bsc4I	CCNNNNNNNGG	5 cut(s)	196, 377, 514, 817, 1684
Bse1I	ACTGG	1 cut(s)	69
Bse3DI	GCAATG	3 cut(s)	16, 33, 750
BseBI	CCWGG	3 cut(s)	191, 204, 1766
BseDI	CCNNGG	2 cut(s)	203, 2066
BseGI	GGATG	2 cut(s)	1155, 1225
BseLI	CCNNNNNNNGG	5 cut(s)	196, 377, 514, 817, 1684
BseMI	GCAATG	3 cut(s)	16, 33, 750
BseMII	CTCAG	6 cut(s)	771, 906, 1612, 1641, 1878, 1884
BseNI	ACTGG	1 cut(s)	69
BseRI	GAGGAG	2 cut(s)	214, 313
BseX3I	CGGCCG	1 cut(s)	1076
BseXI	GCAGC	6 cut(s)	30, 511, 547, 1489, 1641, 1812
BseYI	CCCAGC	1 cut(s)	1881
Bsh1285I	CGRYCG	1 cut(s)	1079
BshFI	GGCC	6 cut(s)	100, 882, 895, 1078, 1171, 1764
BsiEI	CGRYCG	1 cut(s)	1079
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	1075
BslFI	GGGAC	2 cut(s)	278, 1615
BslI	CCNNNNNNNGG	5 cut(s)	196, 377, 514, 817, 1684
BsmAI	GTCTC	6 cut(s)	22, 470, 776, 1424, 1582, 1717
BsmFI	GGGAC	2 cut(s)	278, 1615
BsnI	GGCC	6 cut(s)	100, 882, 895, 1078, 1171, 1764
BsoBI	CYCGRG	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
BspACI	CCGC	4 cut(s)	295, 1211, 1903, 1909
BspANI	GGCC	6 cut(s)	100, 882, 895, 1078, 1171, 1764
BspCNI	CTCAG	6 cut(s)	772, 907, 1611, 1642, 1877, 1885
BspLI	GGNNCC	4 cut(s)	201, 266, 369, 881
BspMI	ACCTGC	1 cut(s)	1483
BspOI	GCTAGC	1 cut(s)	942
BspPI	GGATC	3 cut(s)	577, 715, 1883
BspQI	GCTCTTC	1 cut(s)	1290
BspTI	CTTAAG	1 cut(s)	1022
BsrBI	CCGCTC	1 cut(s)	1211
BsrDI	GCAATG	3 cut(s)	16, 33, 750
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	203, 2066
BssMI	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
BssSI	CACGAG	1 cut(s)	1423
BssT1I	CCWWGG	1 cut(s)	2066
Bst2BI	CACGAG	1 cut(s)	1423
Bst2UI	CCWGG	3 cut(s)	191, 204, 1766
Bst4CI	ACNGT	3 cut(s)	730, 1638, 2020
Bst6I	CTCTTC	1 cut(s)	1290
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	2 cut(s)	986, 1112
BstAUI	TGTACA	1 cut(s)	756
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	6 cut(s)	675, 697, 940, 1311, 1841, 1907
BstDEI	CTNAG	9 cut(s)	291, 520, 780, 915, 1085, 1598, 1650, 1864, 1893
BstF5I	GGATG	2 cut(s)	1155, 1225
BstKTI	GATC	7 cut(s)	179, 440, 572, 661, 710, 1781, 1891
BstMAI	GTCTC	6 cut(s)	22, 470, 776, 1424, 1582, 1717
BstMBI	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
BstMCI	CGRYCG	1 cut(s)	1079
BstMWI	GCNNNNNNNGC	9 cut(s)	80, 533, 845, 986, 1112, 1208, 1306, 1663, 1944
BstNI	CCWGG	3 cut(s)	191, 204, 1766
BstNSI	RCATGY	3 cut(s)	757, 1730, 1843
BstPAI	GACNNNNGTC	1 cut(s)	2068
BstSCI	CCNGG	3 cut(s)	189, 202, 1764
BstSFI	CTRYAG	3 cut(s)	351, 564, 901
BstV1I	GCAGC	6 cut(s)	30, 511, 547, 1489, 1641, 1812
BstV2I	GAAGAC	1 cut(s)	1664
BstX2I	RGATCY	3 cut(s)	176, 569, 707
BstYI	RGATCY	3 cut(s)	176, 569, 707
BstZI	CGGCCG	1 cut(s)	1076
BsuRI	GGCC	6 cut(s)	100, 882, 895, 1078, 1171, 1764
BtrI	CACGTC	1 cut(s)	1571
BtsCI	GGATG	2 cut(s)	1155, 1225
BtsIMutI	CAGTG	4 cut(s)	76, 668, 940, 971
BveI	ACCTGC	1 cut(s)	1483
Cac8I	GCNNGC	6 cut(s)	675, 697, 940, 1311, 1841, 1907
CaiI	CAGNNNCTG	1 cut(s)	572
Cfr13I	GGNCC	6 cut(s)	98, 265, 287, 347, 880, 1445
Csp6I	GTAC	4 cut(s)	323, 726, 757, 1387
CspCI	CAANNNNNGTGG	4 cut(s)	1148, 1161, 1183, 1196
CviQI	GTAC	4 cut(s)	323, 726, 757, 1387
DdeI	CTNAG	9 cut(s)	291, 520, 780, 915, 1085, 1598, 1650, 1864, 1893
DpnI	GATC	7 cut(s)	178, 439, 571, 660, 709, 1780, 1890
DpnII	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	2 cut(s)	1076, 1169
EagI	CGGCCG	1 cut(s)	1076
Eam1104I	CTCTTC	1 cut(s)	1290
EarI	CTCTTC	1 cut(s)	1290
EclXI	CGGCCG	1 cut(s)	1076
Eco130I	CCWWGG	1 cut(s)	2066
Eco47I	GGWCC	4 cut(s)	265, 287, 347, 1445
Eco52I	CGGCCG	1 cut(s)	1076
Eco57I	CTGAAG	2 cut(s)	916, 1833
Eco88I	CYCGRG	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	3 cut(s)	189, 202, 1764
EcoT14I	CCWWGG	1 cut(s)	2066
EcoT22I	ATGCAT	2 cut(s)	118, 657
ErhI	CCWWGG	1 cut(s)	2066
FalI	AAGNNNNNCTT	8 cut(s)	503, 535, 534, 566, 1005, 1037, 1044, 1076
FaqI	GGGAC	2 cut(s)	278, 1615
FauI	CCCGC	1 cut(s)	1204
FauNDI	CATATG	1 cut(s)	1540
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	7 cut(s)	44, 525, 561, 1503, 1655, 1826, 1903
FokI	GGATG	2 cut(s)	1142, 1232
Fsp4HI	GCNGC	7 cut(s)	44, 525, 561, 1503, 1655, 1826, 1903
FspBI	CTAG	3 cut(s)	174, 255, 939
GluI	GCNGC	7 cut(s)	44, 525, 561, 1503, 1655, 1826, 1903
GsaI	CCCAGC	1 cut(s)	1885
GsuI	CTGGAG	3 cut(s)	186, 1434, 1787
HaeIII	GGCC	6 cut(s)	100, 882, 895, 1078, 1171, 1764
HapII	CCGG	1 cut(s)	1075
HincII	GTYRAC	2 cut(s)	609, 1441
HindII	GTYRAC	2 cut(s)	609, 1441
HindIII	AAGCTT	1 cut(s)	646
HpaI	GTTAAC	1 cut(s)	1441
HpaII	CCGG	1 cut(s)	1075
HphI	GGTGA	3 cut(s)	530, 627, 1799
Hpy166II	GTNNAC	4 cut(s)	287, 609, 1441, 1807
Hpy8I	GTNNAC	4 cut(s)	287, 609, 1441, 1807
HpyAV	CCTTC	3 cut(s)	505, 1209, 1682
HpyCH4III	ACNGT	3 cut(s)	730, 1638, 2020
HpyCH4IV	ACGT	2 cut(s)	829, 1570
HpyF10VI	GCNNNNNNNGC	9 cut(s)	80, 533, 845, 986, 1112, 1208, 1306, 1663, 1944
HpyF3I	CTNAG	9 cut(s)	291, 520, 780, 915, 1085, 1598, 1650, 1864, 1893
HpySE526I	ACGT	2 cut(s)	829, 1570
Ksp22I	TGATCA	1 cut(s)	658
KspAI	GTTAAC	1 cut(s)	1441
Kzo9I	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
LguI	GCTCTTC	1 cut(s)	1290
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	6 cut(s)	30, 511, 547, 1489, 1641, 1812
LweI	GCATC	4 cut(s)	103, 642, 1479, 1537
MaeI	CTAG	3 cut(s)	174, 255, 939
MaeII	ACGT	2 cut(s)	829, 1570
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	7 cut(s)	178, 439, 571, 660, 709, 1780, 1890
MbiI	CCGCTC	1 cut(s)	1211
MboI	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
MboII	GAAGA	7 cut(s)	171, 463, 1025, 1161, 1299, 1307, 1664
MfeI	CAATTG	3 cut(s)	849, 1110, 1733
MflI	RGATCY	3 cut(s)	176, 569, 707
MlsI	TGGCCA	1 cut(s)	1171
MluNI	TGGCCA	1 cut(s)	1171
MlyI	GAGTC	3 cut(s)	298, 1291, 1584
Mox20I	TGGCCA	1 cut(s)	1171
Mph1103I	ATGCAT	2 cut(s)	118, 657
MroXI	GAANNNNTTC	3 cut(s)	1017, 1351, 1796
MscI	TGGCCA	1 cut(s)	1171
MseI	TTAA	9 cut(s)	497, 668, 791, 947, 956, 983, 1023, 1139, 1440
Msp20I	TGGCCA	1 cut(s)	1171
MspA1I	CMGCKG	1 cut(s)	1909
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	1075
MspR9I	CCNGG	3 cut(s)	191, 204, 1766
MunI	CAATTG	3 cut(s)	849, 1110, 1733
MvaI	CCWGG	3 cut(s)	191, 204, 1766
MwoI	GCNNNNNNNGC	9 cut(s)	80, 533, 845, 986, 1112, 1208, 1306, 1663, 1944
NdeI	CATATG	1 cut(s)	1540
NdeII	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
NheI	GCTAGC	1 cut(s)	938
NlaIV	GGNNCC	4 cut(s)	201, 266, 369, 881
NmeAIII	GCCGAG	1 cut(s)	1740
NsiI	ATGCAT	2 cut(s)	118, 657
NspI	RCATGY	3 cut(s)	757, 1730, 1843
PaeI	GCATGC	1 cut(s)	1843
PaeR7I	CTCGAG	1 cut(s)	280
PciI	ACATGT	1 cut(s)	1726
PciSI	GCTCTTC	1 cut(s)	1290
PcsI	WCGNNNNNNNCGW	1 cut(s)	1975
PdmI	GAANNNNTTC	3 cut(s)	1017, 1351, 1796
PfeI	GAWTC	7 cut(s)	407, 595, 1081, 1152, 1535, 1897, 2077
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	7 cut(s)	45, 526, 562, 1504, 1656, 1827, 1904
PleI	GAGTC	3 cut(s)	298, 1290, 1584
PpsI	GAGTC	3 cut(s)	298, 1290, 1584
Ppu21I	YACGTR	1 cut(s)	830
PscI	ACATGT	1 cut(s)	1726
PshAI	GACNNNNGTC	1 cut(s)	2068
Psp6I	CCWGG	3 cut(s)	189, 202, 1764
PspFI	CCCAGC	1 cut(s)	1881
PspGI	CCWGG	3 cut(s)	189, 202, 1764
PspN4I	GGNNCC	4 cut(s)	201, 266, 369, 881
PspPI	GGNCC	6 cut(s)	98, 265, 287, 347, 880, 1445
PspXI	VCTCGAGB	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	572
PsuI	RGATCY	3 cut(s)	176, 569, 707
RsaI	GTAC	4 cut(s)	324, 727, 758, 1388
RsaNI	GTAC	4 cut(s)	323, 726, 757, 1387
SapI	GCTCTTC	1 cut(s)	1290
SaqAI	TTAA	9 cut(s)	497, 668, 791, 947, 956, 983, 1023, 1139, 1440
SatI	GCNGC	7 cut(s)	44, 525, 561, 1503, 1655, 1826, 1903
Sau3AI	GATC	7 cut(s)	176, 437, 569, 658, 707, 1778, 1888
Sau96I	GGNCC	6 cut(s)	98, 265, 287, 347, 880, 1445
ScaI	AGTACT	2 cut(s)	727, 1388
SchI	GAGTC	3 cut(s)	298, 1291, 1584
ScrFI	CCNGG	3 cut(s)	191, 204, 1766
SfaNI	GCATC	4 cut(s)	103, 642, 1479, 1537
SfcI	CTRYAG	3 cut(s)	351, 564, 901
Sfr274I	CTCGAG	1 cut(s)	280
SinI	GGWCC	4 cut(s)	265, 287, 347, 1445
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	280, 1022
SmoI	CTYRAG	2 cut(s)	280, 1022
SphI	GCATGC	1 cut(s)	1843
SsiI	CCGC	4 cut(s)	295, 1211, 1903, 1909
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	3 cut(s)	174, 255, 939
StyD4I	CCNGG	3 cut(s)	189, 202, 1764
StyI	CCWWGG	1 cut(s)	2066
TaaI	ACNGT	3 cut(s)	730, 1638, 2020
TaiI	ACGT	2 cut(s)	832, 1573
TaqI	TCGA	9 cut(s)	60, 281, 436, 963, 1207, 1285, 1924, 2023, 2075
TatI	WGTACW	3 cut(s)	725, 756, 1386
TauI	GCSGC	1 cut(s)	1905
TfiI	GAWTC	7 cut(s)	407, 595, 1081, 1152, 1535, 1897, 2077
Tru1I	TTAA	9 cut(s)	497, 668, 791, 947, 956, 983, 1023, 1139, 1440
Tru9I	TTAA	9 cut(s)	497, 668, 791, 947, 956, 983, 1023, 1139, 1440
TscAI	CASTG	4 cut(s)	76, 668, 940, 978
TseI	GCWGC	6 cut(s)	43, 524, 560, 1502, 1654, 1825
TspDTI	ATGAA	6 cut(s)	17, 42, 870, 1056, 1527, 1630
TspGWI	ACGGA	1 cut(s)	1458
TspRI	CASTG	4 cut(s)	76, 668, 940, 978
Van91I	CCANNNNNTGG	1 cut(s)	817
Vha464I	CTTAAG	1 cut(s)	1022
VpaK11BI	GGWCC	4 cut(s)	265, 287, 347, 1445
XapI	RAATTY	5 cut(s)	64, 243, 950, 959, 1462
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	3 cut(s)	757, 1730, 1843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	280
XmnI	GAANNNNTTC	3 cut(s)	1017, 1351, 1796
XspI	CTAG	3 cut(s)	174, 255, 939
ZrmI	AGTACT	2 cut(s)	727, 1388
Zsp2I	ATGCAT	2 cut(s)	118, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.