Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005642

Physical Location & Seq

Genomic Coordinates Reverse (-)

4754326 .. 4760654

Gene Structure 6329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2712 bp

ATGAATGGCAATGGTGTCTCATCTGATGAAGTCATTGCCAAGCTGCTTGAAATGGGTTTCGAGAATTCCAGTGCCGTAGAGGCTGTAAAAGAAGTAGGGCCATCATTTGATGATGCATTGGAGTTTATATTGAATGGTTGTTGTAGAAGCAATCAGAGAGCATTGAGTAGTTCTAGATGTTCTACAAACCAGGCAAAGGCTCCAGGGAAAAGAGCTTTGCCCTCCTCAAAACCATTGGGTCAAATTCGGCAGTCTATCATACTGGACCATTTCCAATCCTCGAGTGGACCCAAGCGGAGGAGGACTCATGTGTTACCTGATGTACCTGTATCAGAAATGGTGTGTGGTCCTGTAGAACAATGTGTGGAACCTCTTTCTGGTGTGGATAGCATTGAAGTTTTATCAGAATCATCTCTGGTTGATTGCCTTGACATTCGATCAGATTGGGAGAAGAAAGTCAGCAGTCTCTTGCAAAATCATTTTGGTTTTCTATCATTAAAACCTTTCCAGAAGGAGGTCTTAGCTGCTTGGTTGGCTCACCAAGATACACTTGTTCTTGCTGCAACAGGATCTGGAAAATCTTTGTGCTTCCAGATTCCAGCATTGTTGACAGGGAAAGTGGTTGTTGTGATTTCACCATTGATAAGCTTGATGCACGATCAGTGCTTAAAGCTGGCAAAACATGGGGTTTCTGCTTGCTTTCTTGGATCTGGACAACCTGATAGTACTGTGGAAAATAAAGCAATGAGAGGCATGTACAACATAATATACGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACTCCAAAAGTTGGCAGAAATACGTGGGATTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTCGGCCTGACTACAGGAGATTGTCTGAGTTGCGAAAGAACTTCAGTGCTAGCAATTTAAAATTCTTAAAATTCGATATACCACTGATGGCATTAACTGCTACTGCCACAATTCAGGTTCGTGAAGACATTCTTAAGTCATTGTCCATGTCAAAGGAAACAAAAGTTGTGCTTACTTCATTTTTCCGGCCGAATCTAAGGTTCAGGGTACAGCATAGTAGAACATCAACATCATCATATGAGAATGATTTTTATGACTTGATAGACATGTATACGGGCAAGAGAGGAACAGGTGAAAAGAAACAAATGATCATCGCAGAAGAAGTAAACGAAGCGCTGGACAGCTCATCTAACAGTAGTATGTCAGAGGCTGATTGCATTTCAGAGCATGATTTGGACAATATCGAGGATGGTAATTCCGACAGATATGATGAAGCAAGTTCACTCCAGGAAAATGGTTCAAGTGCTTCAAAGGGAAGGGAGCTGTCAGTTGACTACTTGGAAAATGATGTTTTCATCTTTCAGAGTGTTAATGATTGGGATGTTAGCTGTGGTGAATTCTGTGGACTACCTCTTTGTGAGGACTTGAATACTAGAAAAGAAACTACATCGGAGGTACTTGATCTGCCGAGTCAACCAGAAGAAAGACTGAGACTTCTGCAACAGCCCCTAGAGAAAGGATCAACTATCATATATGTTCCTACGAGAAAACAAACGTTGAAAATTGCAACTTATCTTTCCAAGTGTGGAGTGAAGGCTGCTGCCTATAATGCAGGGTTGCCAAAATCACGTCTGAGGCAGGTCCACAAGATGTTTCATGAAAATACATTAGAGGTTGTTGTGGCAACAATTGCTTTTGGAATGGGAATTGACAAGTTAAATGTCCGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCATACTATCAAGAAGCTGGTCGAGCGGGAAGGGATGGAAAATTAGCTGACTGCATTTTATTTGCAAACCTAACAAGACCACCATCACTTTTACCGAGTCGAAGAAGTGAAGAGCAGACAAAGCAAGCATATAAAATGTTGTCTGATTGTTTCAGGTATGGAATGACTTCCTCATGCTGTCGGGCTAAAAAACTTGTGGAGTACTTTGGGGAGGATTTCAGTTATGAGAAGTGTCTCTCGTGTGATGTCTGTGTTAACGGACCTCCAGAAATGCAGAATTTCAGAAAGGAGGCAGATGTCTTGATGCAGGTTATTGCTGCTCATGATAGACAAAGCAGATACAGGAATGATTCATATGATGATGCCATGAGTAGTGATATTAGACGTGAGAGCTATATGGGGAGACTCAATCTCAGAATGATTGTCAGTAAAATAAGAGAGCAGTCCCAACAGTTCATGGCAACTGAGCTGCTTTGGTGGCAAGGTCTTCTCCGAATTATGGAAGGTAAAGGGTTTGTCAGAGAGGGAGATGATAAGAGACATGTTCAATTGAAGTTCCCCAAGCTAACAGAACTCGGCCTGGAGTTTCTGCGATCTGAAAAGGAGAAAACTTTCTATGTTCACCCTGAAGCTGATATGCTGCTCTCAAAAAGCATGCCCAAATCTTTCTCAACTTTCTCAGAGTGGGGAAAAGGCTGGGCTGATCCTGAGATTCGACGCCAGCGGTTAGAGAGTTTTCGACACAACAGAAGCCCACAAAGCTCTTTTGGTAAAAGAGGAAAACGAAAATCACGAAAGAGAAAATCAAGTGCAAGTAGTCAAAGTGTTAGAACTGTTCGAGGTAGAATAGAGGCTAAACTCTCCAAACAAAGTATCAGACCAAGGTCATCGAATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

903

Amino Acids

101.88

Weight (kDa)

8.76

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	168 - 337	9.6e-25	DEAD/DEAH box helicase
Helicase_C	PF00271	518 - 617	9.4e-16	Helicase conserved C-terminal domain
RecQ_Zn_bind	PF16124	638 - 688	1.1e-08	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005642)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680 AT5G27680
fragaria_vesca	FvH4_6g06440 FvH4_6g06440 FvH4_6g06440 FvH4_6g06440
malus_domestica	MD04G1201600.v1.1
prunus_persica	Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1 Prupe.6G321800_v2.0.a1
pyrus_communis	pycom04g17780
rosa_chinensis	RchiOBHm_Chr3g0455521
rosa_laevigata	RLG00000025352
rosa_multiflora	Rmu_sc0005164.1_g000005 Rmu_sc0010428.1_g000001
rosa_roxburghii	Rroxscaffold_6G00423700 Rroxscaffold_6G00424190
rosa_rugosa	Rorug03G0008300
rosa_samantha	Rh3AG067700 Rh3BG070300 Rh3CG068600 Rh3DG070200
rosa_wichuraiana	Rw3G005380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1678, 2110
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	1838
AccI	GTMKAC	1 cut(s)	1160
AciI	CCGC	3 cut(s)	295, 1838, 2536
AclI	AACGTT	1 cut(s)	1604
AclWI	GGATC	4 cut(s)	577, 715, 1576, 2510
AcoI	YGGCCR	2 cut(s)	1076, 1796
AcsI	RAATTY	6 cut(s)	64, 243, 950, 959, 1445, 2089
AcuI	CTGAAG	2 cut(s)	916, 2460
AcyI	GRCGYC	1 cut(s)	2530
AfaI	GTAC	6 cut(s)	324, 727, 758, 1098, 1506, 2015
AfeI	AGCGCT	1 cut(s)	1224
AfiI	CCNNNNNNNGG	6 cut(s)	196, 297, 377, 514, 817, 2311
AflII	CTTAAG	1 cut(s)	1022
AflIII	ACRYGT	2 cut(s)	1155, 2353
AjiI	CACGTC	2 cut(s)	1679, 2198
AjnI	CCWGG	4 cut(s)	189, 202, 1335, 2391
Alw26I	GTCTC	7 cut(s)	22, 470, 776, 1534, 2051, 2209, 2344
AlwI	GGATC	4 cut(s)	577, 715, 1576, 2510
AlwNI	CAGNNNCTG	2 cut(s)	572, 1259
Ama87I	CYCGRG	1 cut(s)	280
Aor51HI	AGCGCT	1 cut(s)	1224
AoxI	GGCC	6 cut(s)	98, 880, 893, 1076, 1796, 2389
ApeKI	GCWGC	8 cut(s)	43, 524, 560, 1646, 1649, 2129, 2281, 2452
ApoI	RAATTY	6 cut(s)	64, 243, 950, 959, 1445, 2089
ArsI	GACNNNNNNTTYG	2 cut(s)	1446, 1478
Asp700I	GAANNNNTTC	3 cut(s)	1017, 1978, 2423
AspLEI	GCGC	1 cut(s)	1225
AspS9I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
AsuHPI	GGTGA	5 cut(s)	530, 627, 1193, 1454, 2426
AsuNHI	GCTAGC	1 cut(s)	938
AvaI	CYCGRG	1 cut(s)	280
AvaII	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BalI	TGGCCA	1 cut(s)	1798
BauI	CACGAG	1 cut(s)	2050
BbsI	GAAGAC	2 cut(s)	1020, 2291
BbvI	GCAGC	8 cut(s)	30, 511, 547, 1633, 1636, 2116, 2268, 2439
BccI	CCATC	5 cut(s)	109, 970, 1292, 1841, 1903
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	4 cut(s)	191, 204, 1337, 2393
BclI	TGATCA	1 cut(s)	1197
BcoDI	GTCTC	7 cut(s)	22, 470, 776, 1534, 2051, 2209, 2344
BfaI	CTAG	4 cut(s)	174, 939, 1482, 1559
BfmI	CTRYAG	2 cut(s)	351, 901
BfoI	RGCGCY	1 cut(s)	1226
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	2 cut(s)	1678, 2110
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	8 cut(s)	44, 525, 561, 1647, 1650, 2130, 2282, 2453
BlsI	GCNGC	8 cut(s)	45, 526, 562, 1648, 1651, 2131, 2283, 2454
BmcAI	AGTACT	2 cut(s)	727, 2015
Bme1390I	CCNGG	4 cut(s)	191, 204, 1337, 2393
Bme18I	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
BmeT110I	CYCGRG	1 cut(s)	280
BmgBI	CACGTC	2 cut(s)	1679, 2198
BmgT120I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
BmiI	GGNNCC	4 cut(s)	201, 289, 369, 881
BmrFI	CCNGG	4 cut(s)	191, 204, 1337, 2393
BmsI	GCATC	4 cut(s)	103, 642, 2106, 2164
BmtI	GCTAGC	1 cut(s)	942
BoxI	GACNNNNGTC	1 cut(s)	2695
BpiI	GAAGAC	2 cut(s)	1020, 2291
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
BpmI	CTGGAG	4 cut(s)	186, 1319, 2061, 2414
BsaAI	YACGTR	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	2530
BsaJI	CCNNGG	2 cut(s)	203, 2693
Bsc4I	CCNNNNNNNGG	6 cut(s)	196, 297, 377, 514, 817, 2311
Bse1I	ACTGG	2 cut(s)	69, 267
Bse3DI	GCAATG	3 cut(s)	16, 33, 750
BseBI	CCWGG	4 cut(s)	191, 204, 1337, 2393
BseDI	CCNNGG	2 cut(s)	203, 2693
BseGI	GGATG	4 cut(s)	1303, 1435, 1782, 1852
BseLI	CCNNNNNNNGG	6 cut(s)	196, 297, 377, 514, 817, 2311
BseMI	GCAATG	3 cut(s)	16, 33, 750
BseMII	CTCAG	8 cut(s)	771, 906, 1529, 1673, 2239, 2268, 2505, 2511
BseNI	ACTGG	2 cut(s)	69, 267
BseRI	GAGGAG	2 cut(s)	214, 313
BseX3I	CGGCCG	1 cut(s)	1076
BseXI	GCAGC	8 cut(s)	30, 511, 547, 1633, 1636, 2116, 2268, 2439
BseYI	CCCAGC	1 cut(s)	2508
Bsh1285I	CGRYCG	1 cut(s)	1079
BshFI	GGCC	6 cut(s)	100, 882, 895, 1078, 1798, 2391
BsiEI	CGRYCG	1 cut(s)	1079
BsiHKCI	CYCGRG	1 cut(s)	280
BsiSI	CCGG	1 cut(s)	1075
BslFI	GGGAC	1 cut(s)	2242
BslI	CCNNNNNNNGG	6 cut(s)	196, 297, 377, 514, 817, 2311
BsmAI	GTCTC	7 cut(s)	22, 470, 776, 1534, 2051, 2209, 2344
BsmFI	GGGAC	1 cut(s)	2242
BsnI	GGCC	6 cut(s)	100, 882, 895, 1078, 1798, 2391
BsoBI	CYCGRG	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
BspACI	CCGC	3 cut(s)	295, 1838, 2536
BspANI	GGCC	6 cut(s)	100, 882, 895, 1078, 1798, 2391
BspCNI	CTCAG	8 cut(s)	772, 907, 1530, 1674, 2238, 2269, 2504, 2512
BspHI	TCATGA	2 cut(s)	1705, 2134
BspLI	GGNNCC	4 cut(s)	201, 289, 369, 881
BspMI	ACCTGC	2 cut(s)	1678, 2110
BspOI	GCTAGC	1 cut(s)	942
BspPI	GGATC	4 cut(s)	577, 715, 1576, 2510
BspQI	GCTCTTC	1 cut(s)	1917
BspTI	CTTAAG	1 cut(s)	1022
BsrBI	CCGCTC	1 cut(s)	1838
BsrDI	GCAATG	3 cut(s)	16, 33, 750
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	69, 267
BssECI	CCNNGG	2 cut(s)	203, 2693
BssMI	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
BssNAI	GTATAC	1 cut(s)	1161
BssNI	GRCGYC	1 cut(s)	2530
BssSI	CACGAG	1 cut(s)	2050
BssT1I	CCWWGG	1 cut(s)	2693
Bst1107I	GTATAC	1 cut(s)	1161
Bst2BI	CACGAG	1 cut(s)	2050
Bst2UI	CCWGG	4 cut(s)	191, 204, 1337, 2393
Bst4CI	ACNGT	4 cut(s)	730, 1244, 2265, 2647
Bst6I	CTCTTC	1 cut(s)	1917
BstACI	GRCGYC	1 cut(s)	2530
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	2 cut(s)	986, 1739
BstAUI	TGTACA	1 cut(s)	756
BstBAI	YACGTR	1 cut(s)	830
BstC8I	GCNNGC	6 cut(s)	675, 697, 940, 1938, 2468, 2534
BstF5I	GGATG	4 cut(s)	1303, 1435, 1782, 1852
BstH2I	RGCGCY	1 cut(s)	1226
BstHHI	GCGC	1 cut(s)	1225
BstKTI	GATC	9 cut(s)	440, 572, 661, 710, 1200, 1513, 1571, 2408, 2518
BstMAI	GTCTC	7 cut(s)	22, 470, 776, 1534, 2051, 2209, 2344
BstMBI	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
BstMCI	CGRYCG	1 cut(s)	1079
BstNI	CCWGG	4 cut(s)	191, 204, 1337, 2393
BstNSI	RCATGY	4 cut(s)	757, 1159, 2357, 2470
BstPAI	GACNNNNGTC	1 cut(s)	2695
BstSCI	CCNGG	4 cut(s)	189, 202, 1335, 2391
BstSFI	CTRYAG	2 cut(s)	351, 901
BstV1I	GCAGC	8 cut(s)	30, 511, 547, 1633, 1636, 2116, 2268, 2439
BstV2I	GAAGAC	2 cut(s)	1020, 2291
BstX2I	RGATCY	2 cut(s)	569, 707
BstXI	CCANNNNNNTGG	1 cut(s)	1343
BstYI	RGATCY	2 cut(s)	569, 707
BstZ17I	GTATAC	1 cut(s)	1161
BstZI	CGGCCG	1 cut(s)	1076
BsuRI	GGCC	6 cut(s)	100, 882, 895, 1078, 1798, 2391
BtgZI	GCGATG	1 cut(s)	1186
BtrI	CACGTC	2 cut(s)	1679, 2198
BtsCI	GGATG	4 cut(s)	1303, 1435, 1782, 1852
BtsIMutI	CAGTG	4 cut(s)	76, 668, 940, 971
BveI	ACCTGC	2 cut(s)	1678, 2110
Cac8I	GCNNGC	6 cut(s)	675, 697, 940, 1938, 2468, 2534
CaiI	CAGNNNCTG	2 cut(s)	572, 1259
CciI	TCATGA	2 cut(s)	1705, 2134
CfoI	GCGC	1 cut(s)	1225
Cfr13I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
CseI	GACGC	1 cut(s)	2538
Csp6I	GTAC	6 cut(s)	323, 726, 757, 1097, 1505, 2014
CspCI	CAANNNNNGTGG	4 cut(s)	1775, 1788, 1810, 1823
CviQI	GTAC	6 cut(s)	323, 726, 757, 1097, 1505, 2014
DpnI	GATC	9 cut(s)	439, 571, 660, 709, 1199, 1512, 1570, 2407, 2517
DpnII	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
DraI	TTTAAA	1 cut(s)	948
EaeI	YGGCCR	2 cut(s)	1076, 1796
EagI	CGGCCG	1 cut(s)	1076
Eam1104I	CTCTTC	1 cut(s)	1917
EarI	CTCTTC	1 cut(s)	1917
EclXI	CGGCCG	1 cut(s)	1076
Eco130I	CCWWGG	1 cut(s)	2693
Eco47I	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
Eco47III	AGCGCT	1 cut(s)	1224
Eco52I	CGGCCG	1 cut(s)	1076
Eco57I	CTGAAG	2 cut(s)	916, 2460
Eco88I	CYCGRG	1 cut(s)	280
EcoRI	GAATTC	2 cut(s)	64, 1445
EcoRII	CCWGG	4 cut(s)	189, 202, 1335, 2391
EcoT14I	CCWWGG	1 cut(s)	2693
EcoT22I	ATGCAT	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	2693
FalI	AAGNNNNNCTT	8 cut(s)	503, 535, 534, 566, 1005, 1037, 1044, 1076
FaqI	GGGAC	1 cut(s)	2242
FauI	CCCGC	1 cut(s)	1831
FauNDI	CATATG	2 cut(s)	1126, 2167
FbaI	TGATCA	1 cut(s)	1197
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	8 cut(s)	44, 525, 561, 1647, 1650, 2130, 2282, 2453
FokI	GGATG	4 cut(s)	1310, 1442, 1769, 1859
Fsp4HI	GCNGC	8 cut(s)	44, 525, 561, 1647, 1650, 2130, 2282, 2453
FspBI	CTAG	4 cut(s)	174, 939, 1482, 1559
GlaI	GCGC	1 cut(s)	1224
GluI	GCNGC	8 cut(s)	44, 525, 561, 1647, 1650, 2130, 2282, 2453
GsaI	CCCAGC	1 cut(s)	2512
GsuI	CTGGAG	4 cut(s)	186, 1319, 2061, 2414
HaeII	RGCGCY	1 cut(s)	1226
HaeIII	GGCC	6 cut(s)	100, 882, 895, 1078, 1798, 2391
HapII	CCGG	1 cut(s)	1075
HgaI	GACGC	1 cut(s)	2538
HhaI	GCGC	1 cut(s)	1225
Hin1I	GRCGYC	1 cut(s)	2530
Hin6I	GCGC	1 cut(s)	1223
HinP1I	GCGC	1 cut(s)	1223
HincII	GTYRAC	4 cut(s)	609, 1381, 1523, 2068
HindII	GTYRAC	4 cut(s)	609, 1381, 1523, 2068
HindIII	AAGCTT	1 cut(s)	646
HpaI	GTTAAC	1 cut(s)	2068
HpaII	CCGG	1 cut(s)	1075
HphI	GGTGA	5 cut(s)	530, 627, 1193, 1454, 2426
Hpy99I	CGWCG	1 cut(s)	2532
HpyAV	CCTTC	5 cut(s)	505, 1359, 1636, 1836, 2309
HpyCH4III	ACNGT	4 cut(s)	730, 1244, 2265, 2647
HpyCH4IV	ACGT	5 cut(s)	771, 829, 1604, 1678, 2197
HpySE526I	ACGT	5 cut(s)	771, 829, 1604, 1678, 2197
Hsp92I	GRCGYC	1 cut(s)	2530
HspAI	GCGC	1 cut(s)	1223
Ksp22I	TGATCA	1 cut(s)	1197
KspAI	GTTAAC	1 cut(s)	2068
Kzo9I	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
LguI	GCTCTTC	1 cut(s)	1917
LmnI	GCTCC	2 cut(s)	205, 1369
Lsp1109I	GCAGC	8 cut(s)	30, 511, 547, 1633, 1636, 2116, 2268, 2439
LweI	GCATC	4 cut(s)	103, 642, 2106, 2164
MaeI	CTAG	4 cut(s)	174, 939, 1482, 1559
MaeII	ACGT	5 cut(s)	771, 829, 1604, 1678, 2197
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	9 cut(s)	439, 571, 660, 709, 1199, 1512, 1570, 2407, 2517
MbiI	CCGCTC	1 cut(s)	1838
MboI	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
MboII	GAAGA	8 cut(s)	463, 1025, 1220, 1541, 1788, 1926, 1934, 2291
MfeI	CAATTG	3 cut(s)	849, 1737, 2360
MflI	RGATCY	2 cut(s)	569, 707
MlsI	TGGCCA	1 cut(s)	1798
MluNI	TGGCCA	1 cut(s)	1798
MlyI	GAGTC	4 cut(s)	298, 1528, 1918, 2211
MmeI	TCCRAC	1 cut(s)	1332
Mox20I	TGGCCA	1 cut(s)	1798
Mph1103I	ATGCAT	1 cut(s)	118
MroXI	GAANNNNTTC	3 cut(s)	1017, 1978, 2423
MscI	TGGCCA	1 cut(s)	1798
Msp20I	TGGCCA	1 cut(s)	1798
MspA1I	CMGCKG	1 cut(s)	2536
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	1075
MspR9I	CCNGG	4 cut(s)	191, 204, 1337, 2393
MunI	CAATTG	3 cut(s)	849, 1737, 2360
MvaI	CCWGG	4 cut(s)	191, 204, 1337, 2393
NdeI	CATATG	2 cut(s)	1126, 2167
NdeII	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
NheI	GCTAGC	1 cut(s)	938
NlaIV	GGNNCC	4 cut(s)	201, 289, 369, 881
NmeAIII	GCCGAG	2 cut(s)	1542, 2367
NsiI	ATGCAT	1 cut(s)	118
NspI	RCATGY	4 cut(s)	757, 1159, 2357, 2470
PaeI	GCATGC	1 cut(s)	2470
PaeR7I	CTCGAG	1 cut(s)	280
PagI	TCATGA	2 cut(s)	1705, 2134
PciI	ACATGT	2 cut(s)	1155, 2353
PciSI	GCTCTTC	1 cut(s)	1917
PcsI	WCGNNNNNNNCGW	1 cut(s)	2602
PdmI	GAANNNNTTC	3 cut(s)	1017, 1978, 2423
PfeI	GAWTC	7 cut(s)	407, 595, 1081, 1779, 2162, 2524, 2704
PflMI	CCANNNNNTGG	1 cut(s)	817
PfoI	TCCNGGA	1 cut(s)	1335
PkrI	GCNGC	8 cut(s)	45, 526, 562, 1648, 1651, 2131, 2283, 2454
PleI	GAGTC	4 cut(s)	298, 1527, 1917, 2211
PpsI	GAGTC	4 cut(s)	298, 1527, 1917, 2211
Ppu21I	YACGTR	1 cut(s)	830
PscI	ACATGT	2 cut(s)	1155, 2353
PshAI	GACNNNNGTC	1 cut(s)	2695
Psp1406I	AACGTT	1 cut(s)	1604
Psp6I	CCWGG	4 cut(s)	189, 202, 1335, 2391
PspFI	CCCAGC	1 cut(s)	2508
PspGI	CCWGG	4 cut(s)	189, 202, 1335, 2391
PspN4I	GGNNCC	4 cut(s)	201, 289, 369, 881
PspPI	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
PspXI	VCTCGAGB	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	572, 1259
PsuI	RGATCY	2 cut(s)	569, 707
RsaI	GTAC	6 cut(s)	324, 727, 758, 1098, 1506, 2015
RsaNI	GTAC	6 cut(s)	323, 726, 757, 1097, 1505, 2014
SapI	GCTCTTC	1 cut(s)	1917
SatI	GCNGC	8 cut(s)	44, 525, 561, 1647, 1650, 2130, 2282, 2453
Sau3AI	GATC	9 cut(s)	437, 569, 658, 707, 1197, 1510, 1568, 2405, 2515
Sau96I	GGNCC	7 cut(s)	98, 265, 287, 347, 880, 1690, 2072
ScaI	AGTACT	2 cut(s)	727, 2015
SchI	GAGTC	4 cut(s)	298, 1528, 1918, 2211
ScrFI	CCNGG	4 cut(s)	191, 204, 1337, 2393
SfaNI	GCATC	4 cut(s)	103, 642, 2106, 2164
SfcI	CTRYAG	2 cut(s)	351, 901
Sfr274I	CTCGAG	1 cut(s)	280
SinI	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	2 cut(s)	280, 1022
SmoI	CTYRAG	2 cut(s)	280, 1022
SphI	GCATGC	1 cut(s)	2470
SsiI	CCGC	3 cut(s)	295, 1838, 2536
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	4 cut(s)	174, 939, 1482, 1559
StyD4I	CCNGG	4 cut(s)	189, 202, 1335, 2391
StyI	CCWWGG	1 cut(s)	2693
TaaI	ACNGT	4 cut(s)	730, 1244, 2265, 2647
TaiI	ACGT	5 cut(s)	774, 832, 1607, 1681, 2200
TatI	WGTACW	3 cut(s)	725, 756, 2013
TfiI	GAWTC	7 cut(s)	407, 595, 1081, 1779, 2162, 2524, 2704
TscAI	CASTG	4 cut(s)	76, 668, 940, 978
TseI	GCWGC	8 cut(s)	43, 524, 560, 1646, 1649, 2129, 2281, 2452
TspGWI	ACGGA	1 cut(s)	2085
TspRI	CASTG	4 cut(s)	76, 668, 940, 978
Van91I	CCANNNNNTGG	1 cut(s)	817
Vha464I	CTTAAG	1 cut(s)	1022
VpaK11BI	GGWCC	5 cut(s)	265, 287, 347, 1690, 2072
XapI	RAATTY	6 cut(s)	64, 243, 950, 959, 1445, 2089
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	4 cut(s)	757, 1159, 2357, 2470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XhoI	CTCGAG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	1160
XmnI	GAANNNNTTC	3 cut(s)	1017, 1978, 2423
XspI	CTAG	4 cut(s)	174, 939, 1482, 1559
ZrmI	AGTACT	2 cut(s)	727, 2015
Zsp2I	ATGCAT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.