Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003979

Physical Location & Seq

Genomic Coordinates Reverse (-)

26893727 .. 26898161

Gene Structure 4435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2754 bp

ATGAATCTAGTTTGCCTCTTGGCAATCCTCATTATCTGTATTGGAAGATCCACAGAAGGAGCATCAAGACCTGCTGTTGTGAACATTGGAGCTATGTTTGCACTAAGCACAATTAATGGAGGAGTCTCAAAGATTGCCATTAAGGCTGCCGAGGAGGATGTGAATGCCGATCCAAGCATTCTTAGTGGAACTAAATTTTCTGTATCTATTCATGATTCGAACTACAGTGGATTTCTCAGCATCATCGGAGCACTAAATTACATGGAGTCTGATACTGTGGCTATAATTGGTCCTCAAACTTCTGTAATGGCTCATATAGTCTCACATCTTGCAAATGAACTACACGTGCCGTTACTGTCATTCACTGCACTAGATCCCACCCTATCAAGCCTGCAGTACCCTTACTTTCTTCAAACTGCACCAAATGATCAATTCCAGATGAATGCTATTGGAGACATGGTTAGTTATTTCGGTTGGAAAGAGGTGGTTGCACTTTTCACTGATGATGATCAGAGCCGAAATGGTGTTACTGCATTAGGTGATAAGCTTGCAGAAAACATGCACAAGATTTCTTACAAGGCAGTACTTCCACCTGATCCAACAGCAACTCGAGACCAAGTTAAGAATGTGCTGGTAAAGATTCAGATAATGGAGTCTCGAGTAATTGTTCTACACACATTCTCGAAAACCGGTCTCTTGGTTTTTGATGTTGCAAAGGAACTTGGGATGATGGAGAGTGGATATGTTTGGATAGCTACTGCTTGGTTGTCCACAGTTTTGGATTCAACTTCCCCACTTTCTCAGAAGACTAAAAACTCTATCAAAGGAGCTCTCACTCTTCGTCCGCACACACCGGATTCAAAAAGGAAAAGAGCTTTCATTTCAAGGTGGAAGAAGTTGAGTAATGGAACTAGAGGGTTGAACCCTTATGCTCTATATGCCTATGACACTGTTTGGATTATTGCTCATGCTGTCAATTTGCTTTTGGATCAGGGAGTTACCATTTCTTTTTCCGATCATGCTAGTATACCTGGTTATGGGGAAGGGATTATGAACCTTTCTGCATTAAGCATTTTTAATGGTGGCAAGCAGTTGCTGGGAAAACATATTGCAAACCAACACAACCGGTCTCACTGGTCCACTGGCTTTTCATTCAGACAGATCGGATACTGGTCTAACAATTCAGGGCTATCTGTTGTGCCCCCCGAGACAGCACCCAACCGGTCTAGTTCAAACCAACATTTAGCTGCTGTTGTATGGCCTGGAGGGACAACAAATAAGCCCCGAGGGTGGGTTTTTCCAAACAATGGGAAGCAGTTAATAATTGGAGTACCAGACAGAGTAAGCTATCGCGACTTTGTGTCACGACAAAATGGTACAGATATAGCTAAAGGATACTGCATTGACATTTTCCTTGCAGCCATAAAGTTGCTTCCCTATGCAGTTCCACATAGGTTTGAGCTGTTTGGTGATGGCCACAAGAACCCAAGCTACTACGAGCTTGTTAGCAATGTCGCTTCTGGTAAGTTTGATGCTGCTGTTGGTGACATTGCAATAGTTGCAAACAGAACAAAGATTGTGGATTTCACTCAGCCATATATAGAGTCAGGGCTAGTAGTGGTGGCACCAGTTAGGGGTTCAGATGCAAGAGCTTGGGCATTCTTGAAGCCGTTTTCTCCGTTGATGTGGGGTGTCACAGCAGCTTTCTTCCTAATTGTTGGATCAGTCCTGTGGGTTCTTGAACATAGATTAAATGATGATTTCCGGGGCCCTCCTAGGAAACAGATTGGCACAATTTTATGGTTTAGCTTCTCTACTATGTTTTTTGCTCATAGAGAAAATACTGTGAGCTTACTAGGGCGAATGGTGCTAATCATCTGGCTTTTTATAGTTCTGATAATCAACTCGAGCTACACAGCTAGCCTGACATCAATGCTCACAGTACAACAATTATCTTCACCCATCACTGGAATCGATACCTTGATATCTAGCTTCGAGCCTATAGGATTCCAAGTAGGGTCTTTTGCTGAAAACTATTTGATCGAGGAACTCAACATCCCAAAATCTAGACTGGTTCCTCTTGGTTCACCAGAAGAATATGCAAATGCCCTCAAGGAAAGAACTGTTGCTGCTGTGGTTGATGAAAGGCCTTATATAGAACTCTTCCTCTCAGATAACTGCATGTTCTCAATCAGAGGGCCAGAATTCACCAAAAGTGGCTGGGGATTTGCATTTCCAAGAGACTCTCCTTTAGCCATAGATATGTCAACTGCCATTCTCACTCTATCAGAGAACGGTGAGCTTCAGCAAATTCATGACAAATGGCTATCAAAGAAGGCTTGTGCTTCACAAACCTCTGACCTCGAATCTGACCAGCTTCAACTACAAAGCTTCTGGGGAGTATTCCTAATAGTTGCCACTGCATGTTTCATTGCTCTAGTCATTCACTTTTCGTTGGCTTTTAGACAGTACCTCCGGCGTTCCCCTGAAGATGATCATCATTCTGATCTAGAGCCGTCTGGCCATGGCAGCACAAGTTCTGGTACTACTGCAACACGCCGCCTCACGTTCTTGTCATTCATTGACGAAAAGAAAGATCAATCAAAAGATAACAAGTCAAAAAGAAAACGTGAGGAAATCATGCGAAAGTCATCTAATTGGCATGAAAAGGAAGATGTACCAAGGAATGTTAGTACATCCAAGAGAGAACAAGTGAACAAGTCTGAGATATTGCATACTTCTGATAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

917

Amino Acids

101.47

Weight (kDa)

7.71

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	39 - 326	2e-16	Periplasmic binding protein
ANF_receptor	PF01094	44 - 366	1.1e-76	Receptor family ligand binding region
Lig_chan-Glu_bd	PF10613	457 - 542	2.8e-08	Ligated ion channel L-glutamate- and glycine-binding site
SBP_bac_3	PF00497	500 - 777	9.6e-11	Bacterial extracellular solute-binding proteins, family 3
Lig_chan	PF00060	562 - 809	2.2e-37	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17260 AT4G35290 AT4G35290 AT4G35290 AT4G35290 AT4G35290 AT4G35290
fragaria_vesca	FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810
malus_domestica	MD05G1139700.v1.1 MD10G1141900.v1.1
prunus_persica	Prupe.8G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280931
rosa_laevigata	RLG00000013015
rosa_multiflora	Rmu_ssc0000288.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187480
rosa_rugosa	Rorug06G0136800 Rorug06G0136900 Rorug06G0137000 Rorug06G0137000 Rorug06G0137000
rosa_samantha	Rh6AG249300 Rh6CG252000 Rh6DG243800
rosa_wichuraiana	Rw6G005260 Rw6G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	79
AccB1I	GGYRCC	1 cut(s)	1624
AccB7I	CCANNNNNTGG	1 cut(s)	1307
AccI	GTMKAC	1 cut(s)	1027
AccII	CGCG	1 cut(s)	1353
AciI	CCGC	2 cut(s)	845, 2560
AclWI	GGATC	6 cut(s)	42, 164, 368, 590, 996, 1729
AcoI	YGGCCR	2 cut(s)	1474, 2521
AcsI	RAATTY	3 cut(s)	194, 2204, 2310
AcuI	CTGAAG	2 cut(s)	2288, 2508
AcvI	CACGTG	1 cut(s)	346
AfaI	GTAC	9 cut(s)	398, 585, 1332, 1378, 1944, 2471, 2545, 2679, 2695
AfiI	CCNNNNNNNGG	6 cut(s)	1037, 1290, 1291, 1307, 1634, 1967
AflIII	ACRYGT	1 cut(s)	343
AgeI	ACCGGT	3 cut(s)	689, 1125, 1221
AgsI	TTSAA	9 cut(s)	413, 786, 861, 885, 922, 1233, 1666, 1742, 2381
AhdI	GACNNNNNGTC	1 cut(s)	1360
AjnI	CCWGG	2 cut(s)	1030, 1261
AloI	GAACNNNNNNTCC	2 cut(s)	2040, 2072
Alw21I	GWGCWC	2 cut(s)	253, 832
Alw26I	GTCTC	9 cut(s)	130, 325, 447, 606, 660, 698, 1134, 1202, 2235
AlwI	GGATC	6 cut(s)	42, 164, 368, 590, 996, 1729
AlwNI	CAGNNNCTG	1 cut(s)	1096
Ama87I	CYCGRG	5 cut(s)	609, 657, 1205, 1284, 1906
AoxI	GGCC	6 cut(s)	1259, 1474, 1768, 2147, 2198, 2521
ApaI	GGGCCC	1 cut(s)	1772
ApeKI	GCWGC	7 cut(s)	146, 1247, 1418, 1535, 1700, 2129, 2529
ApoI	RAATTY	3 cut(s)	194, 2204, 2310
AseI	ATTAAT	1 cut(s)	114
AsiGI	ACCGGT	3 cut(s)	689, 1125, 1221
AspA2I	CCTAGG	1 cut(s)	1775
AspS9I	GGNCC	5 cut(s)	290, 1137, 1768, 1769, 2198
AsuC2I	CCSGG	1 cut(s)	1766
AsuHPI	GGTGA	7 cut(s)	551, 1481, 1556, 1950, 2079, 2200, 2309
AsuII	TTCGAA	1 cut(s)	218
AsuNHI	GCTAGC	1 cut(s)	1919
AvaI	CYCGRG	5 cut(s)	609, 657, 1205, 1284, 1906
AvaII	GGWCC	2 cut(s)	290, 1137
AvrII	CCTAGG	1 cut(s)	1775
BaeGI	GKGCMC	2 cut(s)	1203, 1772
BalI	TGGCCA	2 cut(s)	1476, 2523
BanI	GGYRCC	1 cut(s)	1624
BanII	GRGCYC	2 cut(s)	832, 1772
BbrPI	CACGTG	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	2 cut(s)	253, 832
BbvI	GCAGC	7 cut(s)	133, 1234, 1430, 1522, 1712, 2116, 2541
BccI	CCATC	3 cut(s)	724, 1466, 1970
BceAI	ACGGC	3 cut(s)	334, 1654, 2500
BciT130I	CCWGG	2 cut(s)	1032, 1263
BciVI	GTATCC	2 cut(s)	1160, 1388
BclI	TGATCA	3 cut(s)	427, 508, 2494
BcnI	CCSGG	1 cut(s)	1766
BcoDI	GTCTC	9 cut(s)	130, 325, 447, 606, 660, 698, 1134, 1202, 2235
BfmI	CTRYAG	3 cut(s)	223, 392, 2001
BfuAI	ACCTGC	1 cut(s)	79
BfuI	GTATCC	2 cut(s)	1160, 1388
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	8 cut(s)	147, 1248, 1419, 1536, 1701, 2130, 2530, 2560
BlnI	CCTAGG	1 cut(s)	1775
BlsI	GCNGC	8 cut(s)	148, 1249, 1420, 1537, 1702, 2131, 2531, 2561
BmcAI	AGTACT	1 cut(s)	585
Bme1390I	CCNGG	3 cut(s)	1032, 1263, 1766
Bme18I	GGWCC	2 cut(s)	290, 1137
BmeRI	GACNNNNNGTC	1 cut(s)	1360
BmeT110I	CYCGRG	5 cut(s)	609, 657, 1205, 1284, 1906
BmgT120I	GGNCC	5 cut(s)	290, 1137, 1768, 1769, 2198
BmiI	GGNNCC	4 cut(s)	1626, 1769, 1770, 2076
BmrFI	CCNGG	3 cut(s)	1032, 1263, 1766
BmsI	GCATC	4 cut(s)	71, 249, 1522, 1633
BmtI	GCTAGC	1 cut(s)	1923
BpiI	GAAGAC	1 cut(s)	812
BpmI	CTGGAG	1 cut(s)	1284
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	2096
BpuMI	CCSGG	1 cut(s)	1766
Bsa29I	ATCGAT	1 cut(s)	1974
BsaAI	YACGTR	1 cut(s)	346
BsaBI	GATNNNNATC	2 cut(s)	507, 2496
BsaI	GGTCTC	3 cut(s)	606, 698, 1134
BsaJI	CCNNGG	6 cut(s)	150, 1285, 1765, 1775, 2524, 2681
BsaWI	WCCGGW	4 cut(s)	689, 853, 1125, 1221
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 2457, 2487
Bsc4I	CCNNNNNNNGG	6 cut(s)	1037, 1290, 1291, 1307, 1634, 1967
Bse118I	RCCGGY	3 cut(s)	689, 1125, 1221
Bse1I	ACTGG	6 cut(s)	1139, 1147, 1175, 1628, 1972, 2076
Bse3DI	GCAATG	3 cut(s)	1516, 1548, 2430
Bse8I	GATNNNNATC	2 cut(s)	507, 2496
BseBI	CCWGG	2 cut(s)	1032, 1263
BseCI	ATCGAT	1 cut(s)	1974
BseDI	CCNNGG	6 cut(s)	150, 1285, 1765, 1775, 2524, 2681
BseGI	GGATG	4 cut(s)	163, 732, 2055, 2696
BseJI	GATNNNNATC	2 cut(s)	507, 2496
BseLI	CCNNNNNNNGG	6 cut(s)	1037, 1290, 1291, 1307, 1634, 1967
BseMI	GCAATG	3 cut(s)	1516, 1548, 2430
BseMII	CTCAG	5 cut(s)	250, 815, 1604, 2184, 2715
BseNI	ACTGG	6 cut(s)	1139, 1147, 1175, 1628, 1972, 2076
BseRI	GAGGAG	2 cut(s)	135, 167
BseSI	GKGCMC	2 cut(s)	1203, 1772
BseXI	GCAGC	7 cut(s)	133, 1234, 1430, 1522, 1712, 2116, 2541
BseYI	CCCAGC	2 cut(s)	1096, 2220
BsgI	GTGCAG	2 cut(s)	351, 402
Bsh1236I	CGCG	1 cut(s)	1353
BshFI	GGCC	6 cut(s)	1261, 1476, 1770, 2149, 2200, 2523
BshNI	GGYRCC	1 cut(s)	1624
BshTI	ACCGGT	3 cut(s)	689, 1125, 1221
BshVI	ATCGAT	1 cut(s)	1974
BsiHKAI	GWGCWC	2 cut(s)	253, 832
BsiHKCI	CYCGRG	5 cut(s)	609, 657, 1205, 1284, 1906
BsiSI	CCGG	6 cut(s)	690, 854, 1126, 1222, 1765, 2476
BslFI	GGGAC	1 cut(s)	1282
BslI	CCNNNNNNNGG	6 cut(s)	1037, 1290, 1291, 1307, 1634, 1967
BsmAI	GTCTC	9 cut(s)	130, 325, 447, 606, 660, 698, 1134, 1202, 2235
BsmFI	GGGAC	1 cut(s)	1282
BsmI	GAATGC	4 cut(s)	169, 177, 448, 1658
BsnI	GGCC	6 cut(s)	1261, 1476, 1770, 2149, 2200, 2523
Bso31I	GGTCTC	3 cut(s)	606, 698, 1134
BsoBI	CYCGRG	5 cut(s)	609, 657, 1205, 1284, 1906
Bsp119I	TTCGAA	1 cut(s)	218
Bsp120I	GGGCCC	1 cut(s)	1768
Bsp1286I	GDGCHC	4 cut(s)	253, 832, 1203, 1772
Bsp19I	CCATGG	1 cut(s)	2524
Bsp68I	TCGCGA	1 cut(s)	1353
BspACI	CCGC	2 cut(s)	845, 2560
BspANI	GGCC	6 cut(s)	1261, 1476, 1770, 2149, 2200, 2523
BspCNI	CTCAG	5 cut(s)	249, 814, 1603, 2183, 2716
BspDI	ATCGAT	1 cut(s)	1974
BspFNI	CGCG	1 cut(s)	1353
BspHI	TCATGA	2 cut(s)	211, 2314
BspLI	GGNNCC	4 cut(s)	1626, 1769, 1770, 2076
BspMAI	CTGCAG	1 cut(s)	396
BspMI	ACCTGC	1 cut(s)	79
BspOI	GCTAGC	1 cut(s)	1923
BspPI	GGATC	6 cut(s)	42, 164, 368, 590, 996, 1729
BspT104I	TTCGAA	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	1624
BspTNI	GGTCTC	3 cut(s)	606, 698, 1134
BsrDI	GCAATG	3 cut(s)	1516, 1548, 2430
BsrFI	RCCGGY	3 cut(s)	689, 1125, 1221
BsrI	ACTGG	6 cut(s)	1139, 1147, 1175, 1628, 1972, 2076
BssAI	RCCGGY	3 cut(s)	689, 1125, 1221
BssECI	CCNNGG	6 cut(s)	150, 1285, 1765, 1775, 2524, 2681
BssNAI	GTATAC	1 cut(s)	1028
BssT1I	CCWWGG	3 cut(s)	1775, 2524, 2681
Bst1107I	GTATAC	1 cut(s)	1028
Bst2UI	CCWGG	2 cut(s)	1032, 1263
Bst6I	CTCTTC	2 cut(s)	843, 2168
BstAPI	GCANNNNNTGC	1 cut(s)	1559
BstBAI	YACGTR	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	392, 549, 1088, 1921
BstDEI	CTNAG	7 cut(s)	104, 182, 236, 801, 1590, 2170, 2724
BstDSI	CCRYGG	1 cut(s)	2524
BstF5I	GGATG	4 cut(s)	163, 732, 2055, 2696
BstFNI	CGCG	1 cut(s)	1353
BstMAI	GTCTC	9 cut(s)	130, 325, 447, 606, 660, 698, 1134, 1202, 2235
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 143, 938, 1559, 1867, 2529
BstNI	CCWGG	2 cut(s)	1032, 1263
BstNSI	RCATGY	3 cut(s)	562, 2185, 2427
BstSCI	CCNGG	3 cut(s)	1030, 1261, 1764
BstSFI	CTRYAG	3 cut(s)	223, 392, 2001
BstSLI	GKGCMC	2 cut(s)	1203, 1772
BstUI	CGCG	1 cut(s)	1353
BstV1I	GCAGC	7 cut(s)	133, 1234, 1430, 1522, 1712, 2116, 2541
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	2 cut(s)	47, 373
BstXI	CCANNNNNNTGG	1 cut(s)	778
BstYI	RGATCY	2 cut(s)	47, 373
BstZ17I	GTATAC	1 cut(s)	1028
Bsu15I	ATCGAT	1 cut(s)	1974
BsuI	GTATCC	2 cut(s)	1160, 1388
BsuRI	GGCC	6 cut(s)	1261, 1476, 1770, 2149, 2200, 2523
BsuTUI	ATCGAT	1 cut(s)	1974
BtgI	CCRYGG	1 cut(s)	2524
BtsCI	GGATG	4 cut(s)	163, 732, 2055, 2696
BtsI	GCAGTG	2 cut(s)	363, 2418
BtsIMutI	CAGTG	8 cut(s)	232, 363, 498, 948, 1132, 1140, 1965, 2418
BtuMI	TCGCGA	1 cut(s)	1353
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	4 cut(s)	392, 549, 1088, 1921
CaiI	CAGNNNCTG	1 cut(s)	1096
CciI	TCATGA	2 cut(s)	211, 2314
Cfr10I	RCCGGY	3 cut(s)	689, 1125, 1221
Cfr13I	GGNCC	5 cut(s)	290, 1137, 1768, 1769, 2198
ClaI	ATCGAT	1 cut(s)	1974
CsiI	ACCWGGT	1 cut(s)	1030
Csp6I	GTAC	9 cut(s)	397, 584, 1331, 1377, 1943, 2470, 2544, 2678, 2694
CspAI	ACCGGT	3 cut(s)	689, 1125, 1221
CspCI	CAANNNNNGTGG	2 cut(s)	1560, 1595
CviQI	GTAC	9 cut(s)	397, 584, 1331, 1377, 1943, 2470, 2544, 2678, 2694
DdeI	CTNAG	7 cut(s)	104, 182, 236, 801, 1590, 2170, 2724
DriI	GACNNNNNGTC	1 cut(s)	1360
EaeI	YGGCCR	2 cut(s)	1474, 2521
Eam1104I	CTCTTC	2 cut(s)	843, 2168
Eam1105I	GACNNNNNGTC	1 cut(s)	1360
EarI	CTCTTC	2 cut(s)	843, 2168
Ecl136II	GAGCTC	1 cut(s)	830
Eco130I	CCWWGG	3 cut(s)	1775, 2524, 2681
Eco147I	AGGCCT	1 cut(s)	2149
Eco24I	GRGCYC	2 cut(s)	832, 1772
Eco31I	GGTCTC	3 cut(s)	606, 698, 1134
Eco32I	GATATC	1 cut(s)	1986
Eco47I	GGWCC	2 cut(s)	290, 1137
Eco53kI	GAGCTC	1 cut(s)	830
Eco57I	CTGAAG	2 cut(s)	2288, 2508
Eco72I	CACGTG	1 cut(s)	346
Eco88I	CYCGRG	5 cut(s)	609, 657, 1205, 1284, 1906
EcoICRI	GAGCTC	1 cut(s)	830
EcoO109I	RGGNCCY	2 cut(s)	1768, 1769
EcoRI	GAATTC	1 cut(s)	2204
EcoRII	CCWGG	2 cut(s)	1030, 1261
EcoRV	GATATC	1 cut(s)	1986
EcoT14I	CCWWGG	3 cut(s)	1775, 2524, 2681
EcoT38I	GRGCYC	2 cut(s)	832, 1772
ErhI	CCWWGG	3 cut(s)	1775, 2524, 2681
FaqI	GGGAC	1 cut(s)	1282
FbaI	TGATCA	3 cut(s)	427, 508, 2494
FblI	GTMKAC	1 cut(s)	1027
Fnu4HI	GCNGC	8 cut(s)	147, 1248, 1419, 1536, 1701, 2130, 2530, 2560
FokI	GGATG	4 cut(s)	170, 739, 2042, 2683
FriOI	GRGCYC	2 cut(s)	832, 1772
Fsp4HI	GCNGC	8 cut(s)	147, 1248, 1419, 1536, 1701, 2130, 2530, 2560
GluI	GCNGC	8 cut(s)	147, 1248, 1419, 1536, 1701, 2130, 2530, 2560
GsaI	CCCAGC	2 cut(s)	1100, 2224
GsuI	CTGGAG	1 cut(s)	1284
HaeIII	GGCC	6 cut(s)	1261, 1476, 1770, 2149, 2200, 2523
HapII	CCGG	6 cut(s)	690, 854, 1126, 1222, 1765, 2476
HincII	GTYRAC	1 cut(s)	2268
HindII	GTYRAC	1 cut(s)	2268
HindIII	AAGCTT	2 cut(s)	545, 2389
HpaII	CCGG	6 cut(s)	690, 854, 1126, 1222, 1765, 2476
HphI	GGTGA	7 cut(s)	551, 1481, 1556, 1950, 2079, 2200, 2309
Hpy166II	GTNNAC	7 cut(s)	82, 771, 1028, 1140, 2087, 2268, 2716
Hpy8I	GTNNAC	7 cut(s)	82, 771, 1028, 1140, 2087, 2268, 2716
HpyAV	CCTTC	3 cut(s)	50, 1037, 2329
HpyCH4IV	ACGT	3 cut(s)	345, 2567, 2629
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 143, 938, 1559, 1867, 2529
HpyF3I	CTNAG	7 cut(s)	104, 182, 236, 801, 1590, 2170, 2724
HpySE526I	ACGT	3 cut(s)	345, 2567, 2629
Ksp22I	TGATCA	3 cut(s)	427, 508, 2494
LmnI	GCTCC	4 cut(s)	59, 89, 248, 827
Lsp1109I	GCAGC	7 cut(s)	133, 1234, 1430, 1522, 1712, 2116, 2541
LweI	GCATC	4 cut(s)	71, 249, 1522, 1633
MabI	ACCWGGT	1 cut(s)	1030
MaeII	ACGT	3 cut(s)	345, 2567, 2629
MaeIII	GTNAC	6 cut(s)	351, 526, 997, 1362, 1544, 1693
MflI	RGATCY	2 cut(s)	47, 373
MhlI	GDGCHC	4 cut(s)	253, 832, 1203, 1772
MlsI	TGGCCA	2 cut(s)	1476, 2523
MluNI	TGGCCA	2 cut(s)	1476, 2523
MlyI	GAGTC	5 cut(s)	132, 275, 662, 1613, 2237
MmeI	TCCRAC	3 cut(s)	455, 623, 1699
Mox20I	TGGCCA	2 cut(s)	1476, 2523
MscI	TGGCCA	2 cut(s)	1476, 2523
MseI	TTAA	7 cut(s)	114, 141, 621, 1067, 1077, 1319, 1751
MslI	CAYNNNNRTG	1 cut(s)	2261
Msp20I	TGGCCA	2 cut(s)	1476, 2523
MspI	CCGG	6 cut(s)	690, 854, 1126, 1222, 1765, 2476
MspR9I	CCNGG	3 cut(s)	1032, 1263, 1766
Mva1269I	GAATGC	4 cut(s)	169, 177, 448, 1658
MvaI	CCWGG	2 cut(s)	1032, 1263
MvnI	CGCG	1 cut(s)	1353
MwoI	GCNNNNNNNGC	6 cut(s)	98, 143, 938, 1559, 1867, 2529
NciI	CCSGG	1 cut(s)	1766
NcoI	CCATGG	1 cut(s)	2524
NheI	GCTAGC	1 cut(s)	1919
NlaIV	GGNNCC	4 cut(s)	1626, 1769, 1770, 2076
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	3 cut(s)	1362, 1544, 1693
NruI	TCGCGA	1 cut(s)	1353
NspI	RCATGY	3 cut(s)	562, 2185, 2427
NspV	TTCGAA	1 cut(s)	218
PaeR7I	CTCGAG	3 cut(s)	609, 657, 1906
PagI	TCATGA	2 cut(s)	211, 2314
PceI	AGGCCT	1 cut(s)	2149
PctI	GAATGC	4 cut(s)	169, 177, 448, 1658
PfeI	GAWTC	8 cut(s)	4, 215, 640, 782, 857, 1971, 2007, 2366
PflMI	CCANNNNNTGG	1 cut(s)	1307
PinAI	ACCGGT	3 cut(s)	689, 1125, 1221
PkrI	GCNGC	8 cut(s)	148, 1249, 1420, 1537, 1702, 2131, 2531, 2561
PleI	GAGTC	5 cut(s)	131, 274, 661, 1612, 2237
PmaCI	CACGTG	1 cut(s)	346
PmlI	CACGTG	1 cut(s)	346
PpsI	GAGTC	5 cut(s)	131, 274, 661, 1612, 2237
Ppu21I	YACGTR	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	114
Psp124BI	GAGCTC	1 cut(s)	832
Psp6I	CCWGG	2 cut(s)	1030, 1261
PspCI	CACGTG	1 cut(s)	346
PspFI	CCCAGC	2 cut(s)	1096, 2220
PspGI	CCWGG	2 cut(s)	1030, 1261
PspN4I	GGNNCC	4 cut(s)	1626, 1769, 1770, 2076
PspOMI	GGGCCC	1 cut(s)	1768
PspPI	GGNCC	5 cut(s)	290, 1137, 1768, 1769, 2198
PspXI	VCTCGAGB	1 cut(s)	1906
PsrI	GAACNNNNNNTAC	2 cut(s)	1475, 1507
PstI	CTGCAG	1 cut(s)	396
PstNI	CAGNNNCTG	1 cut(s)	1096
PsuI	RGATCY	2 cut(s)	47, 373
RruI	TCGCGA	1 cut(s)	1353
RsaI	GTAC	9 cut(s)	398, 585, 1332, 1378, 1944, 2471, 2545, 2679, 2695
RsaNI	GTAC	9 cut(s)	397, 584, 1331, 1377, 1943, 2470, 2544, 2678, 2694
RseI	CAYNNNNRTG	1 cut(s)	2261
SacI	GAGCTC	1 cut(s)	832
SaqAI	TTAA	7 cut(s)	114, 141, 621, 1067, 1077, 1319, 1751
SatI	GCNGC	8 cut(s)	147, 1248, 1419, 1536, 1701, 2130, 2530, 2560
Sau96I	GGNCC	5 cut(s)	290, 1137, 1768, 1769, 2198
ScaI	AGTACT	1 cut(s)	585
SchI	GAGTC	5 cut(s)	132, 275, 662, 1613, 2237
ScrFI	CCNGG	3 cut(s)	1032, 1263, 1766
SduI	GDGCHC	4 cut(s)	253, 832, 1203, 1772
SexAI	ACCWGGT	1 cut(s)	1030
SfaNI	GCATC	4 cut(s)	71, 249, 1522, 1633
SfcI	CTRYAG	3 cut(s)	223, 392, 2001
Sfr274I	CTCGAG	3 cut(s)	609, 657, 1906
SfuI	TTCGAA	1 cut(s)	218
SinI	GGWCC	2 cut(s)	290, 1137
SlaI	CTCGAG	3 cut(s)	609, 657, 1906
SmiMI	CAYNNNNRTG	1 cut(s)	2261
SmlI	CTYRAG	4 cut(s)	609, 657, 1906, 2111
SmoI	CTYRAG	4 cut(s)	609, 657, 1906, 2111
SseBI	AGGCCT	1 cut(s)	2149
SsiI	CCGC	2 cut(s)	845, 2560
SstI	GAGCTC	1 cut(s)	832
StuI	AGGCCT	1 cut(s)	2149
StyD4I	CCNGG	3 cut(s)	1030, 1261, 1764
StyI	CCWWGG	3 cut(s)	1775, 2524, 2681
TaiI	ACGT	3 cut(s)	348, 2570, 2632
TaqI	TCGA	9 cut(s)	218, 610, 658, 683, 1907, 1974, 1995, 2043, 2364
TatI	WGTACW	3 cut(s)	583, 1942, 2693
TauI	GCSGC	1 cut(s)	2562
TfiI	GAWTC	8 cut(s)	4, 215, 640, 782, 857, 1971, 2007, 2366
Tru1I	TTAA	7 cut(s)	114, 141, 621, 1067, 1077, 1319, 1751
Tru9I	TTAA	7 cut(s)	114, 141, 621, 1067, 1077, 1319, 1751
TscAI	CASTG	8 cut(s)	232, 370, 505, 955, 1139, 1147, 1972, 2425
TseFI	GTSAC	3 cut(s)	1362, 1544, 1693
TseI	GCWGC	7 cut(s)	146, 1247, 1418, 1535, 1700, 2129, 2529
Tsp45I	GTSAC	3 cut(s)	1362, 1544, 1693
TspGWI	ACGGA	1 cut(s)	1668
TspRI	CASTG	8 cut(s)	232, 370, 505, 955, 1139, 1147, 1972, 2425
Van91I	CCANNNNNTGG	1 cut(s)	1307
VpaK11BI	GGWCC	2 cut(s)	290, 1137
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	3 cut(s)	194, 2204, 2310
XbaI	TCTAGA	2 cut(s)	2066, 2509
XceI	RCATGY	3 cut(s)	562, 2185, 2427
XhoI	CTCGAG	3 cut(s)	609, 657, 1906
XmaJI	CCTAGG	1 cut(s)	1775
XmiI	GTMKAC	1 cut(s)	1027
ZrmI	AGTACT	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.