Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003979

Physical Location & Seq

Genomic Coordinates Forward (+)

19341700 .. 19343008

Gene Structure 1309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0136900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGACCGACTGGCTCCGACAGCGTCGCGGCACCGAGATGGTTGCTCCGATTGCTGTACTGCTCCGCCAATCGGATCTGACAAAGACAGAGTTTCAGTCGGATTCCGAAGGCCTCGACATCACCACCATTAGAGAAGTGAAGGAGACGACGGCGACGAGGATCATCACCGGGCATCGAGGCGACGAGGATCATCACCAGGTTGTACTGCTCCGCCAATCGGATCTGACAGAGACAGAGTTTCAGTCGGATTCCGAAGGCCTCGACATCGCCACCATCAGAGAAGTGAAGGAGACGACGGCAACGCGGATCATCACCGGGCATCGAGGCGACGAGGATCATCACCAGGCATCGAGGTTCTGGGCCGTGAGCGTGAGGGAGGGAGGGAGCGAGCGAGAGAGAGAGAGATTAATAGGCGAGGATACTCGCTACGCTTTCACAGGTCATTTGTACAGGTATTTGCTTCATAAGGGAATCAACACCTTCATAGATGATGAGCTTACAAGAGGAGAGGAAATATCACAAGCACTTCTCCAAGCAATTGAAGGATCAAAGCTCTCTCTTATATATCGTGTTCTTCGAAATCTATGCATCCGGCCTCAAAGTGGTGTTTGGATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

206

Amino Acids

23.66

Weight (kDa)

5.52

Isoelectric Point (pI)

47.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	138 - 188	2.8e-10	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17260 AT4G35290 AT4G35290 AT4G35290 AT4G35290 AT4G35290 AT4G35290
fragaria_vesca	FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810
malus_domestica	MD05G1139700.v1.1 MD10G1141900.v1.1
prunus_persica	Prupe.8G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280931
rosa_laevigata	RLG00000013015
rosa_multiflora	Rmu_ssc0000288.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187480
rosa_rugosa	Rorug06G0136800 Rorug06G0136900 Rorug06G0137000 Rorug06G0137000 Rorug06G0137000
rosa_samantha	Rh6AG249300 Rh6CG252000 Rh6DG243800
rosa_wichuraiana	Rw6G005260 Rw6G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccII	CGCG	2 cut(s)	27, 304
AciI	CCGC	4 cut(s)	27, 64, 211, 304
AclWI	GGATC	7 cut(s)	81, 167, 195, 228, 314, 342, 553
AfaI	GTAC	3 cut(s)	57, 204, 449
AfiI	CCNNNNNNNGG	3 cut(s)	70, 217, 602
AgsI	TTSAA	1 cut(s)	542
AjnI	CCWGG	2 cut(s)	195, 342
AluBI	AGCT	2 cut(s)	496, 553
AluI	AGCT	2 cut(s)	496, 553
Alw26I	GTCTC	3 cut(s)	137, 224, 284
AlwI	GGATC	7 cut(s)	81, 167, 195, 228, 314, 342, 553
AoxI	GGCC	4 cut(s)	109, 256, 360, 593
AseI	ATTAAT	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	360
AsuC2I	CCSGG	2 cut(s)	169, 316
AsuHPI	GGTGA	5 cut(s)	112, 157, 185, 304, 332
AsuII	TTCGAA	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	29
BccI	CCATC	2 cut(s)	31, 281
BceAI	ACGGC	3 cut(s)	165, 312, 347
BcgI	CGANNNNNNTGC	4 cut(s)	23, 57, 567, 601
BciT130I	CCWGG	2 cut(s)	197, 344
BciVI	GTATCC	1 cut(s)	412
BcnI	CCSGG	2 cut(s)	169, 316
BcoDI	GTCTC	3 cut(s)	137, 224, 284
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	1 cut(s)	28
BlsI	GCNGC	1 cut(s)	29
Bme1390I	CCNGG	4 cut(s)	169, 197, 316, 344
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	2 cut(s)	14, 31
BmrFI	CCNGG	4 cut(s)	169, 197, 316, 344
BmsI	GCATC	4 cut(s)	181, 328, 356, 597
Bpu14I	TTCGAA	1 cut(s)	577
BpuMI	CCSGG	2 cut(s)	169, 316
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 217, 602
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	197, 344
BseGI	GGATG	2 cut(s)	588, 618
BseLI	CCNNNNNNNGG	3 cut(s)	70, 217, 602
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	519
Bsh1236I	CGCG	2 cut(s)	27, 304
BshFI	GGCC	4 cut(s)	111, 258, 362, 595
BshNI	GGYRCC	1 cut(s)	29
BsiSI	CCGG	3 cut(s)	168, 315, 592
BslI	CCNNNNNNNGG	3 cut(s)	70, 217, 602
BsmAI	GTCTC	3 cut(s)	137, 224, 284
BsmBI	CGTCTC	2 cut(s)	137, 284
BsnI	GGCC	4 cut(s)	111, 258, 362, 595
Bsp119I	TTCGAA	1 cut(s)	577
Bsp1407I	TGTACA	1 cut(s)	447
Bsp143I	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
BspACI	CCGC	4 cut(s)	27, 64, 211, 304
BspANI	GGCC	4 cut(s)	111, 258, 362, 595
BspFNI	CGCG	2 cut(s)	27, 304
BspLI	GGNNCC	2 cut(s)	14, 31
BspPI	GGATC	7 cut(s)	81, 167, 195, 228, 314, 342, 553
BspT104I	TTCGAA	1 cut(s)	577
BspT107I	GGYRCC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	14
BssMI	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
Bst2UI	CCWGG	2 cut(s)	197, 344
BstAUI	TGTACA	1 cut(s)	447
BstBI	TTCGAA	1 cut(s)	577
BstC8I	GCNNGC	1 cut(s)	389
BstF5I	GGATG	2 cut(s)	588, 618
BstFNI	CGCG	2 cut(s)	27, 304
BstKTI	GATC	7 cut(s)	76, 162, 190, 223, 309, 337, 548
BstMAI	GTCTC	3 cut(s)	137, 224, 284
BstMBI	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 50
BstNI	CCWGG	2 cut(s)	197, 344
BstSCI	CCNGG	4 cut(s)	167, 195, 314, 342
BstUI	CGCG	2 cut(s)	27, 304
BstX2I	RGATCY	2 cut(s)	73, 220
BstYI	RGATCY	2 cut(s)	73, 220
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	4 cut(s)	111, 258, 362, 595
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	588, 618
Cac8I	GCNNGC	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	360
CseI	GACGC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	3 cut(s)	56, 203, 448
CviJI	RGCY	7 cut(s)	13, 111, 258, 362, 496, 553, 595
CviKI_1	RGCY	7 cut(s)	13, 111, 258, 362, 496, 553, 595
CviQI	GTAC	3 cut(s)	56, 203, 448
DpnI	GATC	7 cut(s)	75, 161, 189, 222, 308, 336, 547
DpnII	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
EciI	GGCGGA	2 cut(s)	53, 200
Eco147I	AGGCCT	2 cut(s)	111, 258
EcoRII	CCWGG	2 cut(s)	195, 342
EcoT22I	ATGCAT	1 cut(s)	590
Esp3I	CGTCTC	2 cut(s)	137, 284
FaiI	YATR	5 cut(s)	465, 485, 563, 565, 586
Fnu4HI	GCNGC	1 cut(s)	28
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	28
HaeIII	GGCC	4 cut(s)	111, 258, 362, 595
HapII	CCGG	3 cut(s)	168, 315, 592
HgaI	GACGC	1 cut(s)	11
HinfI	GANTC	3 cut(s)	101, 248, 471
HpaII	CCGG	3 cut(s)	168, 315, 592
HphI	GGTGA	5 cut(s)	112, 157, 185, 304, 332
Hpy99I	CGWCG	6 cut(s)	27, 151, 157, 185, 298, 332
HpyAV	CCTTC	6 cut(s)	101, 133, 248, 280, 490, 536
HpyCH4V	TGCA	1 cut(s)	588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 50
Kzo9I	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
LmnI	GCTCC	5 cut(s)	18, 49, 66, 213, 384
LweI	GCATC	4 cut(s)	181, 328, 356, 597
MabI	ACCWGGT	1 cut(s)	195
MalI	GATC	7 cut(s)	75, 161, 189, 222, 308, 336, 547
MboI	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
MboII	GAAGA	1 cut(s)	566
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	2 cut(s)	73, 220
MluCI	AATT	2 cut(s)	537, 616
MmeI	TCCRAC	3 cut(s)	40, 78, 225
Mph1103I	ATGCAT	1 cut(s)	590
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	3 cut(s)	168, 315, 592
MspR9I	CCNGG	4 cut(s)	169, 197, 316, 344
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	2 cut(s)	197, 344
MvnI	CGCG	2 cut(s)	27, 304
MwoI	GCNNNNNNNGC	2 cut(s)	19, 50
NciI	CCSGG	2 cut(s)	169, 316
NdeII	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
NlaIV	GGNNCC	2 cut(s)	14, 31
NsiI	ATGCAT	1 cut(s)	590
NspV	TTCGAA	1 cut(s)	577
PceI	AGGCCT	2 cut(s)	111, 258
PcsI	WCGNNNNNNNCGW	2 cut(s)	152, 574
PfeI	GAWTC	3 cut(s)	101, 248, 471
PflFI	GACNNNGTC	1 cut(s)	21
PkrI	GCNGC	1 cut(s)	29
PshBI	ATTAAT	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	195, 342
PspGI	CCWGG	2 cut(s)	195, 342
PspN4I	GGNNCC	2 cut(s)	14, 31
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	73, 220
PsyI	GACNNNGTC	1 cut(s)	21
RsaI	GTAC	3 cut(s)	57, 204, 449
RsaNI	GTAC	3 cut(s)	56, 203, 448
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	1 cut(s)	28
Sau3AI	GATC	7 cut(s)	73, 159, 187, 220, 306, 334, 545
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	4 cut(s)	169, 197, 316, 344
SetI	ASST	7 cut(s)	201, 356, 442, 455, 482, 498, 555
SexAI	ACCWGGT	1 cut(s)	195
SfaNI	GCATC	4 cut(s)	181, 328, 356, 597
SfuI	TTCGAA	1 cut(s)	577
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	537, 616
SseBI	AGGCCT	2 cut(s)	111, 258
SsiI	CCGC	4 cut(s)	27, 64, 211, 304
StuI	AGGCCT	2 cut(s)	111, 258
StyD4I	CCNGG	4 cut(s)	167, 195, 314, 342
TaqI	TCGA	6 cut(s)	114, 175, 261, 322, 350, 577
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	2 cut(s)	537, 616
TatI	WGTACW	3 cut(s)	55, 202, 447
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	3 cut(s)	101, 248, 471
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TspDTI	ATGAA	2 cut(s)	452, 472
Tth111I	GACNNNGTC	1 cut(s)	21
VspI	ATTAAT	1 cut(s)	407
Zsp2I	ATGCAT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.