Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003979

Physical Location & Seq

Genomic Coordinates Forward (+)

19328936 .. 19334611

Gene Structure 5676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0136800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3051 bp

ATGTCCAACGGTGTGCCAAAAAAACGAAATCATTCAAATTTTATGGCACTAGCACAACCTGTCATTGACCTTAGTTCCAATGGTGAAGACAATGGTAGGAGGAGGTCATCGAATGTGCATCAGAAGATAAAGCTGGAACCTCCTCCGGAACACCATCAACAGGTCATGGATATGGAGGTTCAGTATCCAAACAATCTTACAGCACTAGCACCTCCTGCCATCGTCCTTAGTTCTGATGACGAAGACAATGGAAGTAGGGAGCCACTTCATCTCTATCCGAAGATTGTATTGGAGCCTCCTCCTCCTACAGAACATGATCAACGTGTCATTGATATGGAAACTAAATCTTCAAACAATATTGCAGCAGTAGGACCATCTGTGGTTTTCCTTAGTTCCGATGATGAAGACGATGAGAGTAGGATGATATTTCATGAGAAGGTTGTCTTGGAGCCTGTTGATAGACTTCTAAAGAAGAGCTCTATGGATAGTGTAGAGATGAATGCTCAAAGAAAAGAGTTGGAAACTATACCTGGATTGAATATGGGGATGCATAAAGACATAAAGGAAGGTGTAGAGAGCACGGATCATATCTGGATAGATAAAGATGTAGATGTTGGTGCAGCAGAAGATGCGACCGGTCTAGAACTCATTGATTGTCACGGGCATGATATTCTGGTTCAGGATTGTTTAGCAAGCAAAGATCACATAGAAGAGTTGAAAACATTGGCCGAAAAAGATGTAGATATTGATGGAGACAGAACTTCTGAAAAGGAGTTCAGTGATCAAAGTAATTCTGAAAGTATAGAAGATATACAAAGCATAGCTCCAAGCACAGAGGTCGGAACTCTAGTTCATGAAAATGATATGGTGGCTGGGGAAGGTAATGTGGAAGATGATATGAAGGATAGTGGTAAAATCAATGTTGAGGAAGATGATAGACATGACACAGAGGAAGATGATGAAAACAATATCAAGGAAGATGATCTGAGCGATATTGAGGAAGATGATGTAAATGATAATGAGGAAGATGATGCAAATGATATTGAGGGAGAAGATCTAACAGATGCATGGAACGAGATGACAATGGCATTAGAATGTGCCAAGGATATTGCTGTCGATCCTTCAGATGATGAGCCATCTAGTGAACGCGGGGAAGAATGTGATCACTACTTCATCCTGAAGGATGATCTTGGGTTAGTGTGTCGTATTTGTGGAGTTATTCAGAAGGGGATTGATACCATATTTGAGTTCCAGTATAATAAGGGAAAAAGGAGTACACGCACTTATGTGCAAGAGCCGCGGGATGCCAACAACACAGAGCCAACTGAGAGTTCCTCACTTGGAGTCAAGTTTACTACTGGGCGTGATTTAATGGAAACAGAATTTTCTGCTCATCCAAGTCATAGAAAGCACATGAAACCACATCAAGTAGAGGGGTTTAATTTTCTTTGTAGCAATTTGTTGGGAGACAACCCAGGCGGTTGCATTCTTGCTCATGCCCCTGGTTCAGGAAAGACTTTTCTGGTTATAAGTTTTGTCCAGAGTTACTTAGCCAGGTTTCCCCATGCTAGACCACTTGTTGTTCTACCTAAAACCATTTTGGATACATGGAAGAAAGAGTTCCGGTTATGGCAAGTTGAGGACATTCCTTTGCATGATTTCTATACTTCCAAGGCAGACAAGCGGTCTCAACAGTTGAATGTATTAAAACAATGGGTAGAGCAGAAGAGCATCCTTTTCTTAGGATACCAACAGTTCTCTACTATAATGTGCGACATTGGCAGTAGCAAGACATCGGATAAATGCCGAGAAATTCTGCAGAAGTCCCCTAGTCTTCTCATATTGGATGAAGGTCACACACCAAGGAATGATGAAACTAATCAGTTTCAAGCTCTTGTAAGAGTACAGACCCCACTGAAAGTAGTTCTCTCAGGAACACTCTATCAAAACCATGTCAAAGAAGTCTTCACTCTCTTAGATCTTGTTCGTCCAAAGTTTCTGAAATTGGACACTTCCCGGGAGATTGTGAAGCGGATCATGAGCATAGTACGGATATCGGGTGTGAGGAAACAGTTAAAAGGTGGAGGAGATTCAGCTTTTTTTGACTTAGTAGAGCATACCCTCAAGAAAGATGAAGACTTTAAGAGGAAAGTAGCTATTGTACAAGATCTTCGAGAAATGACCAGGAAGGTGCTCCATTATTATAAAGGTGACTTTTTAGATGAACTTCCTGGGCTTGTTGAGTTCACACTACTACTCGGCCTCACTTCAAGACAGAAAGCTGAATTTGAAAAATTGAAGGGATTGGACAAGTTAAGGAGAATGCCTGTGGGGAGCCTTGTCTCAATGCATCCAGAGTTGAGATATCTTTCAGAGAAAAATCCATCAACTGAGAAGGGCTGCACAGTTGATAATAAGACGATGGATCGATTCTTAGAAAAGTTAAACTTCAGAGATGGAGTAAAAGCTAAATTCTTTCTTAATATGCTTGCATTGTGTGAATCAAATGATGAGAAGCTACTGGTTTTCAGCCAATATCTCCTGCCCCTGAAACTTATGGAGAGATTAGCTGTGAAGGAAATGGGTTGGAGTCTCAACAAGGAGATTTTTGTGTTAACTGGTGATACAAACTCTAGGCAAAAAGAATGGTCTATGGAACTCTTTAACACCTCACCGGATGCTAAAGTGTTATTTGGTTCCATTAGAGCTTGTGGGGAAGGTATCTCGCTTGTGGGAGCTTCTCGTGTCCTTATTATGGAAGTCCAGCTCAACCCTTCAGTGACTCGGCAAGCAATCGGACGTGCATTTCGACCAGGTCAGAAGAAGAAAGTGCACGTCTATAGATTGGTTGCTGCTGACTCACCAGAGGAGGATGACCACGTGCTCTCTTATACCAAGGAGATGATATCAAAGATATGGTTCGAGTGGACTGAGAGCTGTGGACATCAAGACTACTCTGGTATGAAGACTGTAGATCTAAATGACTCTGGTGATATGTTCTTGGAAAGTCAGTTGTTGAAGGAAGATATAAAGGTTTTGCAGAAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

1016

Amino Acids

115.15

Weight (kDa)

4.96

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	471 - 647	1.1e-09	Type III restriction enzyme, res subunit
SNF2-rel_dom	PF00176	475 - 765	7.1e-25	SNF2-related domain
Helicase_C	PF00271	824 - 939	6.9e-12	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17260 AT4G35290 AT4G35290 AT4G35290 AT4G35290 AT4G35290 AT4G35290
fragaria_vesca	FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810 FvH4_2g16810
malus_domestica	MD05G1139700.v1.1 MD10G1141900.v1.1
prunus_persica	Prupe.8G180400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280931
rosa_laevigata	RLG00000013015
rosa_multiflora	Rmu_ssc0000288.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187480
rosa_rugosa	Rorug06G0136800 Rorug06G0136900 Rorug06G0137000 Rorug06G0137000 Rorug06G0137000
rosa_samantha	Rh6AG249300 Rh6CG252000 Rh6DG243800
rosa_wichuraiana	Rw6G005260 Rw6G021570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1529, 2205
AccII	CGCG	2 cut(s)	1149, 1300
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	6 cut(s)	1149, 1298, 1300, 1479, 1684, 2032
AclWI	GGATC	4 cut(s)	591, 1112, 2042, 2433
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	5 cut(s)	37, 1382, 1812, 2285, 2471
AcuI	CTGAAG	4 cut(s)	1107, 1199, 2434, 2760
AcvI	CACGTG	1 cut(s)	2881
AfaI	GTAC	4 cut(s)	1276, 1905, 2049, 2163
AfiI	CCNNNNNNNGG	3 cut(s)	160, 1508, 2755
AflIII	ACRYGT	1 cut(s)	322
AgeI	ACCGGT	1 cut(s)	635
AhdI	GACNNNNNGTC	1 cut(s)	1684
AjiI	CACGTC	2 cut(s)	2801, 2836
AjnI	CCWGG	7 cut(s)	529, 1474, 1501, 1553, 2183, 2230, 2812
AjuI	GAANNNNNNNTTGG	6 cut(s)	272, 304, 428, 460, 1315, 1347
AleI	CACNNNNGTG	1 cut(s)	1286
AloI	GAACNNNNNNTCC	2 cut(s)	834, 866
Alw21I	GWGCWC	5 cut(s)	479, 581, 2196, 2835, 2886
Alw26I	GTCTC	5 cut(s)	747, 1461, 1692, 2347, 2597
Alw44I	GTGCAC	1 cut(s)	2831
AlwI	GGATC	4 cut(s)	591, 1112, 2042, 2433
Ama87I	CYCGRG	1 cut(s)	2016
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	2 cut(s)	726, 2260
ApaLI	GTGCAC	1 cut(s)	2831
ApeKI	GCWGC	4 cut(s)	362, 620, 2400, 2852
ApoI	RAATTY	5 cut(s)	37, 1382, 1812, 2285, 2471
ArsI	GACNNNNNNTTYG	2 cut(s)	2790, 2822
AsiGI	ACCGGT	1 cut(s)	635
Asp700I	GAANNNNTTC	2 cut(s)	31, 1619
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	2 cut(s)	2017, 2018
AsuHPI	GGTGA	6 cut(s)	95, 2222, 2633, 2664, 2853, 3002
AvaI	CYCGRG	1 cut(s)	2016
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	2835
BanII	GRGCYC	1 cut(s)	479
BarI	GAAGNNNNNNTAC	2 cut(s)	2154, 2186
BauI	CACGAG	1 cut(s)	2742
BbrPI	CACGTG	1 cut(s)	2881
BbsI	GAAGAC	7 cut(s)	93, 249, 411, 1826, 1957, 2142, 2972
Bbv12I	GWGCWC	5 cut(s)	479, 581, 2196, 2835, 2886
BbvI	GCAGC	4 cut(s)	374, 632, 2387, 2839
BccI	CCATC	8 cut(s)	162, 227, 382, 743, 1144, 2392, 2416, 2450
BcgI	CGANNNNNNTGC	2 cut(s)	820, 854
BciT130I	CCWGG	7 cut(s)	531, 1476, 1503, 1555, 2185, 2232, 2814
BciVI	GTATCC	3 cut(s)	195, 1597, 1739
BclI	TGATCA	3 cut(s)	316, 781, 1162
BcnI	CCSGG	2 cut(s)	2017, 2018
BcoDI	GTCTC	5 cut(s)	747, 1461, 1692, 2347, 2597
BfaI	CTAG	8 cut(s)	50, 206, 641, 848, 1140, 1569, 1830, 2634
BfmI	CTRYAG	4 cut(s)	306, 1817, 2839, 2970
BfuI	GTATCC	3 cut(s)	195, 1597, 1739
BglII	AGATCT	4 cut(s)	1054, 1978, 2167, 2974
BisI	GCNGC	5 cut(s)	363, 621, 1298, 2401, 2853
BlsI	GCNGC	5 cut(s)	364, 622, 1299, 2402, 2854
Bme1390I	CCNGG	9 cut(s)	531, 1476, 1503, 1555, 2017, 2018, 2185, 2232, 2814
Bme18I	GGWCC	1 cut(s)	371
BmeRI	GACNNNNNGTC	1 cut(s)	1684
BmeT110I	CYCGRG	1 cut(s)	2016
BmgBI	CACGTC	2 cut(s)	2801, 2836
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	6 cut(s)	138, 261, 294, 450, 2336, 2698
BmrFI	CCNGG	9 cut(s)	531, 1476, 1503, 1555, 2017, 2018, 2185, 2232, 2814
BmrI	ACTGGG	1 cut(s)	1368
BmsI	GCATC	9 cut(s)	127, 537, 619, 1021, 1054, 1294, 1740, 2359, 2668
BmuI	ACTGGG	1 cut(s)	1368
BpiI	GAAGAC	7 cut(s)	93, 249, 411, 1826, 1957, 2142, 2972
BplI	GAGNNNNNCTC	2 cut(s)	1319, 1351
BpuEI	CTTGAG	1 cut(s)	2108
BpuMI	CCSGG	2 cut(s)	2017, 2018
Bsa29I	ATCGAT	1 cut(s)	2428
BsaAI	YACGTR	1 cut(s)	2881
BsaI	GGTCTC	1 cut(s)	1692
BsaJI	CCNNGG	9 cut(s)	1101, 1298, 1474, 1501, 1671, 1862, 2016, 2231, 2895
BsaWI	WCCGGW	4 cut(s)	145, 635, 1623, 2674
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 1508, 2755
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	4 cut(s)	1252, 1363, 2526, 2623
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	7 cut(s)	531, 1476, 1503, 1555, 2185, 2232, 2814
BseCI	ATCGAT	1 cut(s)	2428
BseDI	CCNNGG	9 cut(s)	1101, 1298, 1474, 1501, 1671, 1862, 2016, 2231, 2895
BseLI	CCNNNNNNNGG	3 cut(s)	160, 1508, 2755
BseMII	CTCAG	5 cut(s)	977, 1317, 1944, 2382, 2922
BseNI	ACTGG	4 cut(s)	1252, 1363, 2526, 2623
BseRI	GAGGAG	6 cut(s)	115, 132, 288, 291, 2100, 2882
BseSI	GKGCMC	1 cut(s)	2835
BseXI	GCAGC	4 cut(s)	374, 632, 2387, 2839
BseYI	CCCAGC	1 cut(s)	872
BsgI	GTGCAG	2 cut(s)	639, 2386
Bsh1236I	CGCG	2 cut(s)	1149, 1300
Bsh1285I	CGRYCG	1 cut(s)	636
BshFI	GGCC	2 cut(s)	728, 2262
BshTI	ACCGGT	1 cut(s)	635
BshVI	ATCGAT	1 cut(s)	2428
BsiEI	CGRYCG	1 cut(s)	636
BsiHKAI	GWGCWC	5 cut(s)	479, 581, 2196, 2835, 2886
BsiHKCI	CYCGRG	1 cut(s)	2016
BsiSI	CCGG	5 cut(s)	146, 636, 1624, 2017, 2675
BslFI	GGGAC	1 cut(s)	1810
BslI	CCNNNNNNNGG	3 cut(s)	160, 1508, 2755
BsmAI	GTCTC	5 cut(s)	747, 1461, 1692, 2347, 2597
BsmFI	GGGAC	1 cut(s)	1810
BsmI	GAATGC	3 cut(s)	505, 1485, 2328
BsnI	GGCC	2 cut(s)	728, 2262
Bso31I	GGTCTC	1 cut(s)	1692
BsoBI	CYCGRG	1 cut(s)	2016
Bsp1286I	GDGCHC	5 cut(s)	479, 581, 2196, 2835, 2886
Bsp13I	TCCGGA	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	2161
BspACI	CCGC	6 cut(s)	1149, 1298, 1300, 1479, 1684, 2032
BspANI	GGCC	2 cut(s)	728, 2262
BspCNI	CTCAG	5 cut(s)	978, 1318, 1943, 2383, 2923
BspDI	ATCGAT	1 cut(s)	2428
BspEI	TCCGGA	1 cut(s)	145
BspFNI	CGCG	2 cut(s)	1149, 1300
BspHI	TCATGA	3 cut(s)	430, 853, 2037
BspLI	GGNNCC	6 cut(s)	138, 261, 294, 450, 2336, 2698
BspMAI	CTGCAG	1 cut(s)	1821
BspPI	GGATC	4 cut(s)	591, 1112, 2042, 2433
BspQI	GCTCTTC	2 cut(s)	467, 1721
BspTNI	GGTCTC	1 cut(s)	1692
BsrFI	RCCGGY	1 cut(s)	635
BsrGI	TGTACA	1 cut(s)	2161
BsrI	ACTGG	4 cut(s)	1252, 1363, 2526, 2623
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	9 cut(s)	1101, 1298, 1474, 1501, 1671, 1862, 2016, 2231, 2895
BssSI	CACGAG	1 cut(s)	2742
BssT1I	CCWWGG	4 cut(s)	1101, 1671, 1862, 2895
Bst2BI	CACGAG	1 cut(s)	2742
Bst2UI	CCWGG	7 cut(s)	531, 1476, 1503, 1555, 2185, 2232, 2814
Bst4CI	ACNGT	6 cut(s)	11, 1695, 1755, 2073, 2407, 2971
Bst6I	CTCTTC	3 cut(s)	467, 705, 1721
BstAPI	GCANNNNNTGC	2 cut(s)	215, 629
BstAUI	TGTACA	1 cut(s)	2161
BstBAI	YACGTR	1 cut(s)	2881
BstC8I	GCNNGC	3 cut(s)	694, 2490, 2790
BstDSI	CCRYGG	1 cut(s)	1298
BstENI	CCTNNNNNAGG	1 cut(s)	1506
BstFNI	CGCG	2 cut(s)	1149, 1300
BstMAI	GTCTC	5 cut(s)	747, 1461, 1692, 2347, 2597
BstMCI	CGRYCG	1 cut(s)	636
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 629, 1297, 1779
BstNI	CCWGG	7 cut(s)	531, 1476, 1503, 1555, 2185, 2232, 2814
BstSCI	CCNGG	9 cut(s)	529, 1474, 1501, 1553, 2015, 2016, 2183, 2230, 2812
BstSFI	CTRYAG	4 cut(s)	306, 1817, 2839, 2970
BstSLI	GKGCMC	1 cut(s)	2835
BstUI	CGCG	2 cut(s)	1149, 1300
BstV1I	GCAGC	4 cut(s)	374, 632, 2387, 2839
BstV2I	GAAGAC	7 cut(s)	93, 249, 411, 1826, 1957, 2142, 2972
BstX2I	RGATCY	4 cut(s)	1054, 1978, 2167, 2974
BstYI	RGATCY	4 cut(s)	1054, 1978, 2167, 2974
Bsu15I	ATCGAT	1 cut(s)	2428
BsuI	GTATCC	3 cut(s)	195, 1597, 1739
BsuRI	GGCC	2 cut(s)	728, 2262
BsuTUI	ATCGAT	1 cut(s)	2428
BtgI	CCRYGG	1 cut(s)	1298
BtrI	CACGTC	2 cut(s)	2801, 2836
BtsIMutI	CAGTG	3 cut(s)	784, 1913, 2784
Cac8I	GCNNGC	3 cut(s)	694, 2490, 2790
CciI	TCATGA	3 cut(s)	430, 853, 2037
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	1 cut(s)	371
Cfr42I	CCGCGG	1 cut(s)	1301
Cfr9I	CCCGGG	1 cut(s)	2016
ClaI	ATCGAT	1 cut(s)	2428
CsiI	ACCWGGT	1 cut(s)	2812
Csp6I	GTAC	4 cut(s)	1275, 1904, 2048, 2162
CspAI	ACCGGT	1 cut(s)	635
CviQI	GTAC	4 cut(s)	1275, 1904, 2048, 2162
DriI	GACNNNNNGTC	1 cut(s)	1684
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	3 cut(s)	467, 705, 1721
Eam1105I	GACNNNNNGTC	1 cut(s)	1684
EarI	CTCTTC	3 cut(s)	467, 705, 1721
Ecl136II	GAGCTC	1 cut(s)	477
Eco130I	CCWWGG	4 cut(s)	1101, 1671, 1862, 2895
Eco24I	GRGCYC	1 cut(s)	479
Eco31I	GGTCTC	1 cut(s)	1692
Eco32I	GATATC	3 cut(s)	2055, 2366, 2907
Eco47I	GGWCC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	477
Eco57I	CTGAAG	4 cut(s)	1107, 1199, 2434, 2760
Eco72I	CACGTG	1 cut(s)	2881
Eco88I	CYCGRG	1 cut(s)	2016
EcoICRI	GAGCTC	1 cut(s)	477
EcoNI	CCTNNNNNAGG	1 cut(s)	1506
EcoRII	CCWGG	7 cut(s)	529, 1474, 1501, 1553, 2183, 2230, 2812
EcoRV	GATATC	3 cut(s)	2055, 2366, 2907
EcoT14I	CCWWGG	4 cut(s)	1101, 1671, 1862, 2895
EcoT22I	ATGCAT	3 cut(s)	552, 1069, 2352
EcoT38I	GRGCYC	1 cut(s)	479
ErhI	CCWWGG	4 cut(s)	1101, 1671, 1862, 2895
FalI	AAGNNNNNCTT	4 cut(s)	428, 460, 2432, 2464
FaqI	GGGAC	1 cut(s)	1810
FauI	CCCGC	2 cut(s)	1142, 1293
FbaI	TGATCA	3 cut(s)	316, 781, 1162
Fnu4HI	GCNGC	5 cut(s)	363, 621, 1298, 2401, 2853
FriOI	GRGCYC	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	363, 621, 1298, 2401, 2853
FspBI	CTAG	8 cut(s)	50, 206, 641, 848, 1140, 1569, 1830, 2634
GluI	GCNGC	5 cut(s)	363, 621, 1298, 2401, 2853
GsaI	CCCAGC	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	728, 2262
HapII	CCGG	5 cut(s)	146, 636, 1624, 2017, 2675
HincII	GTYRAC	1 cut(s)	2616
HindII	GTYRAC	1 cut(s)	2616
HinfI	GANTC	8 cut(s)	1344, 2090, 2430, 2501, 2590, 2782, 2858, 2984
HpaI	GTTAAC	1 cut(s)	2616
HpaII	CCGG	5 cut(s)	146, 636, 1624, 2017, 2675
HphI	GGTGA	6 cut(s)	95, 2222, 2633, 2664, 2853, 3002
Hpy166II	GTNNAC	8 cut(s)	1145, 1277, 1353, 2247, 2616, 2833, 2928, 2942
Hpy8I	GTNNAC	8 cut(s)	1145, 1277, 1353, 2247, 2616, 2833, 2928, 2942
HpyCH4III	ACNGT	6 cut(s)	11, 1695, 1755, 2073, 2407, 2971
HpyCH4IV	ACGT	4 cut(s)	322, 2800, 2835, 2880
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 629, 1297, 1779
HpySE526I	ACGT	4 cut(s)	322, 2800, 2835, 2880
Kpn2I	TCCGGA	1 cut(s)	145
Ksp22I	TGATCA	3 cut(s)	316, 781, 1162
KspAI	GTTAAC	1 cut(s)	2616
KspI	CCGCGG	1 cut(s)	1301
LguI	GCTCTTC	2 cut(s)	467, 1721
LmnI	GCTCC	7 cut(s)	259, 292, 448, 829, 2199, 2334, 2735
Lsp1109I	GCAGC	4 cut(s)	374, 632, 2387, 2839
LweI	GCATC	9 cut(s)	127, 537, 619, 1021, 1054, 1294, 1740, 2359, 2668
MabI	ACCWGGT	1 cut(s)	2812
MaeI	CTAG	8 cut(s)	50, 206, 641, 848, 1140, 1569, 1830, 2634
MaeII	ACGT	4 cut(s)	322, 2800, 2835, 2880
MaeIII	GTNAC	5 cut(s)	656, 1544, 1853, 2210, 2779
MflI	RGATCY	4 cut(s)	1054, 1978, 2167, 2974
MhlI	GDGCHC	5 cut(s)	479, 581, 2196, 2835, 2886
MlyI	GAGTC	5 cut(s)	1353, 2599, 2776, 2852, 2978
MmeI	TCCRAC	4 cut(s)	30, 498, 820, 2567
Mph1103I	ATGCAT	3 cut(s)	552, 1069, 2352
MroI	TCCGGA	1 cut(s)	145
MroXI	GAANNNNTTC	2 cut(s)	31, 1619
MslI	CAYNNNNRTG	6 cut(s)	170, 332, 663, 858, 1093, 1286
MspA1I	CMGCKG	1 cut(s)	1300
MspI	CCGG	5 cut(s)	146, 636, 1624, 2017, 2675
MspR9I	CCNGG	9 cut(s)	531, 1476, 1503, 1555, 2017, 2018, 2185, 2232, 2814
Mva1269I	GAATGC	3 cut(s)	505, 1485, 2328
MvaI	CCWGG	7 cut(s)	531, 1476, 1503, 1555, 2185, 2232, 2814
MvnI	CGCG	2 cut(s)	1149, 1300
MwoI	GCNNNNNNNGC	4 cut(s)	215, 629, 1297, 1779
NciI	CCSGG	2 cut(s)	2017, 2018
NlaIV	GGNNCC	6 cut(s)	138, 261, 294, 450, 2336, 2698
NmeAIII	GCCGAG	3 cut(s)	1832, 2238, 2764
NmuCI	GTSAC	4 cut(s)	656, 1853, 2210, 2779
NsiI	ATGCAT	3 cut(s)	552, 1069, 2352
OliI	CACNNNNGTG	1 cut(s)	1286
PagI	TCATGA	3 cut(s)	430, 853, 2037
PciSI	GCTCTTC	2 cut(s)	467, 1721
PcsI	WCGNNNNNNNCGW	1 cut(s)	2806
PctI	GAATGC	3 cut(s)	505, 1485, 2328
PdmI	GAANNNNTTC	2 cut(s)	31, 1619
PfeI	GAWTC	3 cut(s)	2090, 2430, 2501
PflFI	GACNNNGTC	1 cut(s)	2814
PinAI	ACCGGT	1 cut(s)	635
PkrI	GCNGC	5 cut(s)	364, 622, 1299, 2402, 2854
PleI	GAGTC	5 cut(s)	1352, 2598, 2776, 2852, 2978
PmaCI	CACGTG	1 cut(s)	2881
PmlI	CACGTG	1 cut(s)	2881
PpsI	GAGTC	5 cut(s)	1352, 2598, 2776, 2852, 2978
Ppu21I	YACGTR	1 cut(s)	2881
PsiI	TTATAA	2 cut(s)	1529, 2205
Psp124BI	GAGCTC	1 cut(s)	479
Psp6I	CCWGG	7 cut(s)	529, 1474, 1501, 1553, 2183, 2230, 2812
PspCI	CACGTG	1 cut(s)	2881
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	7 cut(s)	529, 1474, 1501, 1553, 2183, 2230, 2812
PspN4I	GGNNCC	6 cut(s)	138, 261, 294, 450, 2336, 2698
PspPI	GGNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	1821
PsuI	RGATCY	4 cut(s)	1054, 1978, 2167, 2974
PsyI	GACNNNGTC	1 cut(s)	2814
RsaI	GTAC	4 cut(s)	1276, 1905, 2049, 2163
RsaNI	GTAC	4 cut(s)	1275, 1904, 2048, 2162
RseI	CAYNNNNRTG	6 cut(s)	170, 332, 663, 858, 1093, 1286
SacI	GAGCTC	1 cut(s)	479
SacII	CCGCGG	1 cut(s)	1301
SapI	GCTCTTC	2 cut(s)	467, 1721
SatI	GCNGC	5 cut(s)	363, 621, 1298, 2401, 2853
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	5 cut(s)	1353, 2599, 2776, 2852, 2978
ScrFI	CCNGG	9 cut(s)	531, 1476, 1503, 1555, 2017, 2018, 2185, 2232, 2814
SduI	GDGCHC	5 cut(s)	479, 581, 2196, 2835, 2886
SexAI	ACCWGGT	1 cut(s)	2812
SfaNI	GCATC	9 cut(s)	127, 537, 619, 1021, 1054, 1294, 1740, 2359, 2668
SfcI	CTRYAG	4 cut(s)	306, 1817, 2839, 2970
Sfr303I	CCGCGG	1 cut(s)	1301
SgrBI	CCGCGG	1 cut(s)	1301
SinI	GGWCC	1 cut(s)	371
SmaI	CCCGGG	1 cut(s)	2018
SmiMI	CAYNNNNRTG	6 cut(s)	170, 332, 663, 858, 1093, 1286
SmlI	CTYRAG	1 cut(s)	2123
SmoI	CTYRAG	1 cut(s)	2123
SsiI	CCGC	6 cut(s)	1149, 1298, 1300, 1479, 1684, 2032
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	8 cut(s)	50, 206, 641, 848, 1140, 1569, 1830, 2634
SstI	GAGCTC	1 cut(s)	479
StyD4I	CCNGG	9 cut(s)	529, 1474, 1501, 1553, 2015, 2016, 2183, 2230, 2812
StyI	CCWWGG	4 cut(s)	1101, 1671, 1862, 2895
TaaI	ACNGT	6 cut(s)	11, 1695, 1755, 2073, 2407, 2971
TaiI	ACGT	4 cut(s)	325, 2803, 2838, 2883
TaqI	TCGA	6 cut(s)	110, 1116, 2173, 2428, 2809, 2922
TatI	WGTACW	3 cut(s)	1274, 1903, 2161
TauI	GCSGC	1 cut(s)	1300
TfiI	GAWTC	3 cut(s)	2090, 2430, 2501
TscAI	CASTG	3 cut(s)	784, 1920, 2784
TseFI	GTSAC	4 cut(s)	656, 1853, 2210, 2779
TseI	GCWGC	4 cut(s)	362, 620, 2400, 2852
Tsp45I	GTSAC	4 cut(s)	656, 1853, 2210, 2779
TspGWI	ACGGA	2 cut(s)	596, 2065
TspMI	CCCGGG	1 cut(s)	2016
TspRI	CASTG	3 cut(s)	784, 1920, 2784
Tth111I	GACNNNGTC	1 cut(s)	2814
VneI	GTGCAC	1 cut(s)	2831
VpaK11BI	GGWCC	1 cut(s)	371
XagI	CCTNNNNNAGG	1 cut(s)	1506
XapI	RAATTY	5 cut(s)	37, 1382, 1812, 2285, 2471
XbaI	TCTAGA	1 cut(s)	640
XmaI	CCCGGG	1 cut(s)	2016
XmnI	GAANNNNTTC	2 cut(s)	31, 1619
XspI	CTAG	8 cut(s)	50, 206, 641, 848, 1140, 1569, 1830, 2634
Zsp2I	ATGCAT	3 cut(s)	552, 1069, 2352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.