Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0015761

Physical Location & Seq

Genomic Coordinates Reverse (-)

29216978 .. 29232937

Gene Structure 15960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGATGGATGGTGGAATGACCAGCACTTGCTTGGAGTGGCGGGCACGCCAACGGTGATTAGGAGAGGTGGTGATGCTCCCCGAAAACTGGAGCTGCGATCATGGAGGAGGAAAAGAAGGCCGACAAGCGAGAGAGGAGGAAGAGGAAGAAGAGTATACGACCCCCGTAGTATACCGACCTTCAATAATATGGTTAAAAATAAAGGCTTCTTGCCGTCAGGTCCTTCGGAGATTCCTATTCAGCGTAACCAAATAAAGGAAATTATATATTCCTTACTTCCAGCTTGCAAAGTGCCTGATGTAGATTCTGGTATTCCCTTTAAAGCGGATGCAATTATTGCAAACCCCCCAGCATATGAATTTGATGCTCGAATTGTGGGTGCAAGAAATAGTCTCCATCTGGGGTACTCCAGATTAACAATGTCCGACTGGGCAGAGGAGAATGGAGACCCCTACAAGGCATCAATTCCATTGATTCAAGCCACAAGCCCAGAAGCAGATGTTTTACTTGCTTATGAGATGAATGGAGACGAAACAGCATCAAATTCTGAAGAATCTAGAAGAGCTAGTGTTGAAAATGATACTGAGTGTAATGGTGAAGATGAGATACTTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009791 GO:0010154 GO:0016020 GO:0016125 GO:0016740 GO:0016757 GO:0016758 GO:0016906 GO:0022414 GO:0032501 GO:0032502 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051507 GO:0061458 GO:0071704 GO:0071944 GO:0080043 GO:0080044 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

205

Amino Acids

22.91

Weight (kDa)

5.82

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285381
rosa_roxburghii	Rroxscaffold_3G00263710 Rroxscaffold_7G00189490 Rroxscaffold_7G00191510
rosa_rugosa	Rorug06G0112100 Rorug06G0112200 Rorug06G0112300 Rorug06G0112400
rosa_samantha	Rh1AG185300 Rh4BG188100 Rh4BG201900 Rh4CG137900 Rh5BG516700 Rh5CG540400 Rh6AG233300 Rh6DG280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	156, 172
AciI	CCGC	2 cut(s)	41, 326
AcsI	RAATTY	2 cut(s)	359, 544
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	3 cut(s)	88, 256, 457
AgsI	TTSAA	3 cut(s)	184, 479, 575
AluBI	AGCT	3 cut(s)	94, 284, 566
AluI	AGCT	3 cut(s)	94, 284, 566
Alw26I	GTCTC	3 cut(s)	398, 441, 522
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	2 cut(s)	359, 544
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	3 cut(s)	67, 83, 608
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	47
BaeI	ACNNNNGTAYC	1 cut(s)	599
BarI	GAAGNNNNNNTAC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	2 cut(s)	3, 405
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	398, 441, 522
BfaI	CTAG	2 cut(s)	558, 567
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	5 cut(s)	64, 319, 355, 470, 548
BmuI	ACTGGG	1 cut(s)	439
BpmI	CTGGAG	2 cut(s)	110, 394
BsaI	GGTCTC	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 256, 457
Bse1I	ACTGG	2 cut(s)	93, 434
BseGI	GGATG	3 cut(s)	10, 14, 334
BseLI	CCNNNNNNNGG	3 cut(s)	88, 256, 457
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	93, 434
BseRI	GAGGAG	3 cut(s)	121, 150, 452
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	81
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	88, 256, 457
BsmAI	GTCTC	3 cut(s)	398, 441, 522
BsmBI	CGTCTC	1 cut(s)	522
BsnI	GGCC	1 cut(s)	121
Bso31I	GGTCTC	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	98
BspACI	CCGC	2 cut(s)	41, 326
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	577
BspQI	GCTCTTC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	441
BsrI	ACTGG	2 cut(s)	93, 434
BssMI	GATC	1 cut(s)	98
BssNAI	GTATAC	2 cut(s)	157, 173
Bst1107I	GTATAC	2 cut(s)	157, 173
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	3 cut(s)	136, 145, 556
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	3 cut(s)	43, 47, 286
BstDEI	CTNAG	2 cut(s)	585, 611
BstF5I	GGATG	3 cut(s)	10, 14, 334
BstKTI	GATC	1 cut(s)	101
BstMAI	GTCTC	3 cut(s)	398, 441, 522
BstMBI	GATC	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstSLI	GKGCMC	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	81
BstZ17I	GTATAC	2 cut(s)	157, 173
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	3 cut(s)	10, 14, 334
Cac8I	GCNNGC	3 cut(s)	43, 47, 286
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	7 cut(s)	94, 121, 207, 284, 482, 489, 566
CviKI_1	RGCY	7 cut(s)	94, 121, 207, 284, 482, 489, 566
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	2 cut(s)	585, 611
DpnI	GATC	1 cut(s)	100
DpnII	GATC	1 cut(s)	98
DraI	TTTAAA	1 cut(s)	322
Eam1104I	CTCTTC	3 cut(s)	136, 145, 556
EarI	CTCTTC	3 cut(s)	136, 145, 556
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	570
EcoO109I	RGGNCCY	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	522
FaeI	CATG	1 cut(s)	105
FaiI	YATR	9 cut(s)	103, 157, 173, 191, 266, 268, 355, 357, 516
FatI	CATG	1 cut(s)	101
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	1 cut(s)	355
FblI	GTMKAC	2 cut(s)	156, 172
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	3 cut(s)	17, 21, 341
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	558, 567
GluI	GCNGC	1 cut(s)	95
GsaI	CCCAGC	1 cut(s)	353
GsuI	CTGGAG	2 cut(s)	110, 394
HaeIII	GGCC	1 cut(s)	121
Hin1II	CATG	1 cut(s)	105
HinfI	GANTC	4 cut(s)	232, 305, 475, 554
HphI	GGTGA	3 cut(s)	67, 83, 608
Hpy166II	GTNNAC	2 cut(s)	157, 173
Hpy188I	TCNGA	3 cut(s)	229, 427, 550
Hpy188III	TCNNGA	2 cut(s)	411, 558
Hpy8I	GTNNAC	2 cut(s)	157, 173
HpyAV	CCTTC	3 cut(s)	111, 190, 234
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	288, 332, 341, 383
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	585, 611
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	98
LguI	GCTCTTC	1 cut(s)	556
LmnI	GCTCC	2 cut(s)	82, 91
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	5 cut(s)	64, 319, 355, 470, 548
MaeI	CTAG	2 cut(s)	558, 567
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	1 cut(s)	100
MboI	GATC	1 cut(s)	98
MboII	GAAGA	6 cut(s)	153, 159, 162, 563, 573, 611
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	6 cut(s)	261, 333, 359, 372, 465, 544
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	7 cut(s)	59, 99, 102, 128, 131, 137, 430
MseI	TTAA	3 cut(s)	195, 321, 416
MwoI	GCNNNNNNNGC	1 cut(s)	338
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	98
NlaIII	CATG	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	556
PfeI	GAWTC	4 cut(s)	232, 305, 475, 554
PkrI	GCNGC	1 cut(s)	96
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	221
PspPPI	RGGWCCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SapI	GCTCTTC	1 cut(s)	556
SaqAI	TTAA	3 cut(s)	195, 321, 416
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	1 cut(s)	98
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	7 cut(s)	70, 96, 182, 223, 286, 568, 617
SfaNI	GCATC	5 cut(s)	64, 319, 355, 470, 548
SinI	GGWCC	1 cut(s)	221
Sse9I	AATT	6 cut(s)	261, 333, 359, 372, 465, 544
SsiI	CCGC	2 cut(s)	41, 326
SspMI	CTAG	2 cut(s)	558, 567
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	370
TasI	AATT	6 cut(s)	261, 333, 359, 372, 465, 544
TfiI	GAWTC	4 cut(s)	232, 305, 475, 554
Tru1I	TTAA	3 cut(s)	195, 321, 416
Tru9I	TTAA	3 cut(s)	195, 321, 416
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	372, 536
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	2 cut(s)	359, 544
XbaI	TCTAGA	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XmiI	GTMKAC	2 cut(s)	156, 172
XspI	CTAG	2 cut(s)	558, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.