Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015761

Physical Location & Seq

Genomic Coordinates Forward (+)

15294689 .. 15295789

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0112400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGATCGTATCAGGCGGATTGCAAAGATGACAAAGACTTGCAAGACTTGGACGCCGAACTCGGCTCCAGCACCAAAGAAGTCGTCCGCAGTGCCGGTCTTGATCGGATTGAGAAATTGCGGCAATTCGTAAAGTATCTGACTGATTCCAACGAGAAGATGATGGGGTTAATCTCGTCATGCCAAGAACAGATACTTGAGGCAGAGGGTGTGAAGGCAATGACGGCGAATGAGAAGTTCTTAGATGATTTGATCGAAATGTACATCAAAAATAGCTCGCTGATGCATCAACTCTGCGGAGGGGAATTGCGAGAATTCATCAAATTGGCTCGTGTGGTCCATTCATGCATTACAGATGTGCTTAACAGGGGAGTGTCGAAGAAGCTCAATGAGTCTCTGAAAAAGTATCACCTTGATGCGGAAAAAGTAGTTGCAAAAGTGAAATATCTGCGCCACGAACACAGAGACATGCTTCACAAGTTGAAAGATCTAATTCAGAAGGTTGATAAGAAGCTGGAGCGTACTCGTACTTTAAAGAAGGTCGTAAATGTGGTGTTCATAGGTATGTTGTTTGGTCTGTTTGTTTGCAGCATCATAGCGGCGGCTATGGCTGCTCCGCCAATTGCGTCAGCCTTGACCTCTCATTTATGTATTGCCGGAGTTCTTACTGGTGGTGCCGTTGGTTATGCTTGTTCGCCAGTATTAAAAGAGGGACAACACTGGCTTCTCACTTTGCTTCAAAACCTTGAATCAACTCTGGAGGCACATAAGGGTGTGATTCAGTCGATGGAAGCCGAAACCGAAGAAGCCATTAAAGAGTTGGATGACATCATGTGTCATGTTAATAAGGTCATTGCAAAGGGGAATGATCCAGTGTTGTCCAATTTAAGCTCTGCAAATGATGAGGGAAGAGTAGATGTGGAAATTGATGAGAAAGAGATTATTGAAAAAAAGCGGACAGAGTTTGACAAAGCAATTGAGGAATTGGACAAGAAAAGAAAGGACTGCCTCCGAGTTATAGAGATGGCAAGGAAAAAGGTTCGAAAGGAATATCACGAATTGAAGACTAGCCCAGTGTTGAACACGAAGATCAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009791 GO:0010154 GO:0016020 GO:0016125 GO:0016740 GO:0016757 GO:0016758 GO:0016906 GO:0022414 GO:0032501 GO:0032502 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051507 GO:0061458 GO:0071704 GO:0071944 GO:0080043 GO:0080044 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

366

Amino Acids

41.33

Weight (kDa)

7.97

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	26 - 347	1.2e-24	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285381
rosa_roxburghii	Rroxscaffold_3G00263710 Rroxscaffold_7G00189490 Rroxscaffold_7G00191510
rosa_rugosa	Rorug06G0112100 Rorug06G0112200 Rorug06G0112300 Rorug06G0112400
rosa_samantha	Rh1AG185300 Rh4BG188100 Rh4BG201900 Rh4CG137900 Rh5BG516700 Rh5CG540400 Rh6AG233300 Rh6DG280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	674
AciI	CCGC	9 cut(s)	17, 88, 121, 297, 419, 599, 602, 617, 955
AclWI	GGATC	1 cut(s)	863
AcsI	RAATTY	1 cut(s)	314
AcyI	GRCGYC	1 cut(s)	54
AfaI	GTAC	3 cut(s)	263, 523, 529
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	6 cut(s)	484, 740, 749, 947, 1063, 1081
AluBI	AGCT	4 cut(s)	276, 385, 514, 891
AluI	AGCT	4 cut(s)	276, 385, 514, 891
Alw26I	GTCTC	2 cut(s)	399, 459
AlwI	GGATC	1 cut(s)	863
ApeKI	GCWGC	2 cut(s)	588, 611
ApoI	RAATTY	1 cut(s)	314
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	401
AsuII	TTCGAA	1 cut(s)	1042
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	674
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	1070
BbvI	GCAGC	2 cut(s)	598, 600
BccI	CCATC	3 cut(s)	157, 781, 1018
BceAI	ACGGC	2 cut(s)	240, 662
BcoDI	GTCTC	2 cut(s)	399, 459
BfaI	CTAG	1 cut(s)	1068
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	5 cut(s)	122, 589, 600, 603, 612
BlsI	GCNGC	5 cut(s)	123, 590, 601, 604, 613
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	67, 676
BmrI	ACTGGG	1 cut(s)	1067
BmsI	GCATC	4 cut(s)	273, 295, 406, 600
BmuI	ACTGGG	1 cut(s)	1067
BpiI	GAAGAC	1 cut(s)	1070
BpmI	CTGGAG	3 cut(s)	52, 536, 779
Bpu14I	TTCGAA	1 cut(s)	1042
BpuEI	CTTGAG	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	5 cut(s)	673, 698, 725, 872, 1073
Bse3DI	GCAATG	2 cut(s)	225, 852
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMI	GCAATG	2 cut(s)	225, 852
BseNI	ACTGG	5 cut(s)	673, 698, 725, 872, 1073
BseXI	GCAGC	2 cut(s)	598, 600
BshNI	GGYRCC	1 cut(s)	674
BsiSI	CCGG	2 cut(s)	96, 657
BslFI	GGGAC	1 cut(s)	726
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	2 cut(s)	399, 459
BsmFI	GGGAC	1 cut(s)	726
Bsp119I	TTCGAA	1 cut(s)	1042
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
BspACI	CCGC	9 cut(s)	17, 88, 121, 297, 419, 599, 602, 617, 955
BspLI	GGNNCC	2 cut(s)	67, 676
BspPI	GGATC	1 cut(s)	863
BspT104I	TTCGAA	1 cut(s)	1042
BspT107I	GGYRCC	1 cut(s)	674
BsrDI	GCAATG	2 cut(s)	225, 852
BsrFI	RCCGGY	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	5 cut(s)	673, 698, 725, 872, 1073
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	904
BstACI	GRCGYC	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	261
BstBI	TTCGAA	1 cut(s)	1042
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	6 cut(s)	8, 106, 255, 490, 871, 1092
BstMAI	GTCTC	2 cut(s)	399, 459
BstMBI	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 608, 611
BstNSI	RCATGY	1 cut(s)	472
BstV1I	GCAGC	2 cut(s)	598, 600
BstV2I	GAAGAC	1 cut(s)	1070
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	829
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	4 cut(s)	97, 718, 879, 1080
Cac8I	GCNNGC	1 cut(s)	278
CfoI	GCGC	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	2 cut(s)	62, 615
Csp6I	GTAC	3 cut(s)	262, 522, 528
CviAII	CATG	5 cut(s)	180, 345, 469, 832, 839
CviQI	GTAC	3 cut(s)	262, 522, 528
DdeI	CTNAG	1 cut(s)	241
DpnI	GATC	6 cut(s)	7, 105, 254, 489, 870, 1091
DpnII	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
DraI	TTTAAA	1 cut(s)	534
Eam1104I	CTCTTC	1 cut(s)	904
EarI	CTCTTC	1 cut(s)	904
EciI	GGCGGA	2 cut(s)	32, 606
Eco47I	GGWCC	1 cut(s)	337
EcoRI	GAATTC	1 cut(s)	314
EcoT22I	ATGCAT	2 cut(s)	288, 350
FaeI	CATG	5 cut(s)	183, 348, 472, 835, 842
FaqI	GGGAC	1 cut(s)	726
FatI	CATG	5 cut(s)	179, 344, 468, 831, 838
Fnu4HI	GCNGC	5 cut(s)	122, 589, 600, 603, 612
FokI	GGATG	1 cut(s)	836
Fsp4HI	GCNGC	5 cut(s)	122, 589, 600, 603, 612
FspBI	CTAG	1 cut(s)	1068
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	5 cut(s)	122, 589, 600, 603, 612
GsuI	CTGGAG	3 cut(s)	52, 536, 779
HapII	CCGG	2 cut(s)	96, 657
HgaI	GACGC	2 cut(s)	62, 615
HhaI	GCGC	1 cut(s)	453
Hin1I	GRCGYC	1 cut(s)	54
Hin1II	CATG	5 cut(s)	183, 348, 472, 835, 842
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HinfI	GANTC	4 cut(s)	146, 392, 749, 778
HpaII	CCGG	2 cut(s)	96, 657
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	5 cut(s)	108, 141, 399, 498, 1013
Hpy188III	TCNNGA	4 cut(s)	101, 758, 1055, 1093
HpyAV	CCTTC	3 cut(s)	208, 493, 532
HpyCH4V	TGCA	8 cut(s)	24, 43, 286, 348, 434, 588, 857, 896
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 608, 611
HpyF3I	CTNAG	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	183, 348, 472, 835, 842
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
LmnI	GCTCC	3 cut(s)	71, 517, 619
Lsp1109I	GCAGC	2 cut(s)	598, 600
LweI	GCATC	4 cut(s)	273, 295, 406, 600
MaeI	CTAG	1 cut(s)	1068
MalI	GATC	6 cut(s)	7, 105, 254, 489, 870, 1091
MboI	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
MboII	GAAGA	6 cut(s)	169, 391, 815, 921, 1075, 1099
MfeI	CAATTG	2 cut(s)	621, 975
MflI	RGATCY	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	401
MmeI	TCCRAC	2 cut(s)	174, 801
MnlI	CCTC	9 cut(s)	193, 199, 293, 649, 703, 754, 898, 973, 1019
Mph1103I	ATGCAT	2 cut(s)	288, 350
MseI	TTAA	7 cut(s)	170, 363, 533, 704, 813, 843, 887
MslI	CAYNNNNRTG	3 cut(s)	414, 563, 771
MspI	CCGG	2 cut(s)	96, 657
MunI	CAATTG	2 cut(s)	621, 975
MwoI	GCNNNNNNNGC	3 cut(s)	224, 608, 611
NdeII	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
NlaIII	CATG	5 cut(s)	183, 348, 472, 835, 842
NlaIV	GGNNCC	2 cut(s)	67, 676
NmeAIII	GCCGAG	1 cut(s)	42
NsiI	ATGCAT	2 cut(s)	288, 350
NspI	RCATGY	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	1042
PfeI	GAWTC	3 cut(s)	146, 749, 778
PkrI	GCNGC	5 cut(s)	123, 590, 601, 604, 613
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PspN4I	GGNNCC	2 cut(s)	67, 676
PspPI	GGNCC	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	487
RsaI	GTAC	3 cut(s)	263, 523, 529
RsaNI	GTAC	3 cut(s)	262, 522, 528
RseI	CAYNNNNRTG	3 cut(s)	414, 563, 771
SaqAI	TTAA	7 cut(s)	170, 363, 533, 704, 813, 843, 887
SatI	GCNGC	5 cut(s)	122, 589, 600, 603, 612
Sau3AI	GATC	6 cut(s)	5, 103, 252, 487, 868, 1089
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	401
SfaNI	GCATC	4 cut(s)	273, 295, 406, 600
SfuI	TTCGAA	1 cut(s)	1042
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	3 cut(s)	414, 563, 771
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
SsiI	CCGC	9 cut(s)	17, 88, 121, 297, 419, 599, 602, 617, 955
SspMI	CTAG	1 cut(s)	1068
TaqI	TCGA	4 cut(s)	255, 377, 785, 1042
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	3 cut(s)	124, 602, 605
TfiI	GAWTC	3 cut(s)	146, 749, 778
Tru1I	TTAA	7 cut(s)	170, 363, 533, 704, 813, 843, 887
Tru9I	TTAA	7 cut(s)	170, 363, 533, 704, 813, 843, 887
TscAI	CASTG	4 cut(s)	97, 725, 879, 1080
TseI	GCWGC	2 cut(s)	588, 611
TspDTI	ATGAA	3 cut(s)	307, 333, 547
TspRI	CASTG	4 cut(s)	97, 725, 879, 1080
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	314
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	817
XspI	CTAG	1 cut(s)	1068
Zsp2I	ATGCAT	2 cut(s)	288, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.