Rh6AG233300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015761
Physical Location & Seq
Forward (+)
41748031 .. 41749575
1545 bp
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UTR
Exon/CDS
Intron
Rh6AG233300.1

Sequence Viewer

Length: 255 bp
ATGAAATACAAAGAAGTGAAGAATTTCTATATGTCTGAAATTCGAAAAGACTTCACAATCGATGCTACTTTTAAAGGAAATCCATCACGATTTCTAAATCACAGCTGTGATCCGAACTGCGTCCTTGAAAAGTGGCAAGTTGAGGGGGAAACACGTGTCGGTGTGTTTGCTGCAAGATCAATAGAAGTCGGAGAGCCATTAACATATGATTATAGGAGGAGAATGGAGGCCCCCACAAGGCATCAATTCCATTGA

Protein Analysis

84

Amino Acids

10.0

Weight (kDa)

8.64

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 9 - 71 1.2e-17 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 22, 39
AcvI CACGTG 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 237
AflIII ACRYGT 2 cut(s) 152, 154
AgsI TTSAA 1 cut(s) 128
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 22, 39
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 229
AsuII TTCGAA 1 cut(s) 43
BbrPI CACGTG 1 cut(s) 155
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 91
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 2 cut(s) 52, 250
Bpu14I TTCGAA 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 60
BsaAI YACGTR 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 232
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 230
BshVI ATCGAT 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 237
BsnI GGCC 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 43
Bsp143I GATC 2 cut(s) 109, 176
BspANI GGCC 1 cut(s) 230
BspDI ATCGAT 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 43
BssMI GATC 2 cut(s) 109, 176
BstBAI YACGTR 1 cut(s) 155
BstBI TTCGAA 1 cut(s) 43
BstKTI GATC 2 cut(s) 112, 179
BstMBI GATC 2 cut(s) 109, 176
BstV1I GCAGC 1 cut(s) 157
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 1 cut(s) 230
BsuTUI ATCGAT 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 229
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 109
CviJI RGCY 3 cut(s) 105, 196, 230
CviKI_1 RGCY 3 cut(s) 105, 196, 230
DpnI GATC 2 cut(s) 111, 178
DpnII GATC 2 cut(s) 109, 176
DraI TTTAAA 1 cut(s) 73
Eco72I CACGTG 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 229
FaiI YATR 5 cut(s) 30, 32, 205, 207, 213
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 230
HgaI GACGC 1 cut(s) 109
Hpy188I TCNGA 3 cut(s) 37, 114, 191
Hpy188III TCNNGA 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 154
Kzo9I GATC 2 cut(s) 109, 176
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 52, 250
MaeII ACGT 1 cut(s) 154
MalI GATC 2 cut(s) 111, 178
MboI GATC 2 cut(s) 109, 176
MboII GAAGA 1 cut(s) 31
MluCI AATT 3 cut(s) 22, 39, 245
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 3 cut(s) 136, 210, 220
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 2 cut(s) 72, 200
MslI CAYNNNNRTG 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 105
NdeI CATATG 1 cut(s) 205
NdeII GATC 2 cut(s) 109, 176
NlaIV GGNNCC 1 cut(s) 231
NspV TTCGAA 1 cut(s) 43
OliI CACNNNNGTG 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
Ppu21I YACGTR 1 cut(s) 155
PspCI CACGTG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 72, 200
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 2 cut(s) 109, 176
Sau96I GGNCC 1 cut(s) 229
SetI ASST 2 cut(s) 107, 157
SfaNI GCATC 2 cut(s) 52, 250
SfuI TTCGAA 1 cut(s) 43
SgeI CNNG 7 cut(s) 99, 137, 149, 165, 167, 186, 249
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 3 cut(s) 22, 39, 245
TaiI ACGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 43, 60
TasI AATT 3 cut(s) 22, 39, 245
Tru1I TTAA 2 cut(s) 72, 200
Tru9I TTAA 2 cut(s) 72, 200
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 22, 39
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.