Rh4CG137900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015761
Physical Location & Seq
Reverse (-)
27410798 .. 27412451
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG137900.1

Sequence Viewer

Length: 339 bp
ATGTGTGAAATTCGAAAAGACTTCACAATCGACGCTACTTTTAAAGGAAATCCATCACGATTTCTAAATCACAGCTGTGATCCGAACTGCATCCTTGAAAAGTGGCAAGTTGAGGGGGAAACACGTGTTGGTGTGTTTGCTGCAAGATCAATAGAAGTCAGAGAGCCATCAACATATGATTATAGATTTGTGCAATTTGGACCTGAGGTGAAGTGCTGTTGCGGTGCATCAAATTGTCAAGGCTATCTTGGCATCAAGAAAAAGATTTGTAAGGTGGATCTTTTCTGGGGGAAGAAACGCAAGAGAACACCAACTGCTTGCATAGCTATCCTTAGGTGA

Protein Analysis

112

Amino Acids

12.82

Weight (kDa)

9.15

Isoelectric Point (pI)

33.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 7 - 61 7.2e-13 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 2 cut(s) 74, 285
AcsI RAATTY 1 cut(s) 9
AcvI CACGTG 1 cut(s) 125
AflIII ACRYGT 2 cut(s) 122, 124
AgsI TTSAA 1 cut(s) 98
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AleI CACNNNNGTG 1 cut(s) 75
AluBI AGCT 2 cut(s) 75, 326
AluI AGCT 2 cut(s) 75, 326
AlwI GGATC 2 cut(s) 74, 285
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 220
AsuII TTCGAA 1 cut(s) 13
AvaII GGWCC 1 cut(s) 200
AxyI CCTNAGG 2 cut(s) 204, 332
BbrPI CACGTG 1 cut(s) 125
BbvI GCAGC 1 cut(s) 127
BccI CCATC 2 cut(s) 61, 175
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmsI GCATC 3 cut(s) 99, 236, 261
Bpu14I TTCGAA 1 cut(s) 13
BsaAI YACGTR 1 cut(s) 125
Bse21I CCTNAGG 2 cut(s) 204, 332
BseGI GGATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 127
Bsp119I TTCGAA 1 cut(s) 13
Bsp143I GATC 3 cut(s) 79, 146, 277
BspACI CCGC 1 cut(s) 222
BspCNI CTCAG 1 cut(s) 196
BspPI GGATC 2 cut(s) 74, 285
BspT104I TTCGAA 1 cut(s) 13
BssMI GATC 3 cut(s) 79, 146, 277
BstBAI YACGTR 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 2 cut(s) 204, 332
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 3 cut(s) 82, 149, 280
BstMBI GATC 3 cut(s) 79, 146, 277
BstMWI GCNNNNNNNGC 2 cut(s) 249, 323
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu36I CCTNAGG 2 cut(s) 204, 332
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 1 cut(s) 41
CviJI RGCY 4 cut(s) 75, 166, 243, 326
CviKI_1 RGCY 4 cut(s) 75, 166, 243, 326
DdeI CTNAG 2 cut(s) 204, 332
DpnI GATC 3 cut(s) 81, 148, 279
DpnII GATC 3 cut(s) 79, 146, 277
DraI TTTAAA 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 200
Eco72I CACGTG 1 cut(s) 125
Eco81I CCTNAGG 2 cut(s) 204, 332
FaiI YATR 4 cut(s) 175, 177, 183, 323
FalI AAGNNNNNCTT 2 cut(s) 231, 263
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HgaI GACGC 1 cut(s) 41
HphI GGTGA 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 84, 161
Hpy188III TCNNGA 2 cut(s) 57, 256
Hpy99I CGWCG 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 5 cut(s) 90, 143, 193, 227, 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 323
HpyF3I CTNAG 2 cut(s) 204, 332
HpySE526I ACGT 1 cut(s) 124
Kzo9I GATC 3 cut(s) 79, 146, 277
LpnPI CCDG 2 cut(s) 216, 271
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 3 cut(s) 99, 236, 261
MaeII ACGT 1 cut(s) 124
MalI GATC 3 cut(s) 81, 148, 279
MboI GATC 3 cut(s) 79, 146, 277
MboII GAAGA 1 cut(s) 304
MflI RGATCY 1 cut(s) 277
MluCI AATT 3 cut(s) 9, 194, 232
MnlI CCTC 2 cut(s) 106, 199
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 249, 323
NdeI CATATG 1 cut(s) 175
NdeII GATC 3 cut(s) 79, 146, 277
NspV TTCGAA 1 cut(s) 13
OliI CACNNNNGTG 1 cut(s) 75
PkrI GCNGC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 125
PmlI CACGTG 1 cut(s) 125
Ppu21I YACGTR 1 cut(s) 125
PspCI CACGTG 1 cut(s) 125
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 79, 146, 277
Sau96I GGNCC 1 cut(s) 200
SetI ASST 7 cut(s) 77, 127, 205, 210, 276, 328, 338
SfaNI GCATC 3 cut(s) 99, 236, 261
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 3 cut(s) 9, 194, 232
SsiI CCGC 1 cut(s) 222
TaiI ACGT 1 cut(s) 127
TaqI TCGA 2 cut(s) 13, 30
TasI AATT 3 cut(s) 9, 194, 232
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TseI GCWGC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 200
XapI RAATTY 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.