Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0015761

Physical Location & Seq

Genomic Coordinates Forward (+)

34632508 .. 34635525

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG201900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGTTAAAAATAAAGGCTTCTTGCCGTCAGGTCCTTCGGAGATTCCTATTCAGCGTAACCAAATGAAGGAAATTATATATTCCTTACTTCCAGCTTGCAAAGAGCCTGATGTAGATTCTGGTATTCCCTTTAAAGCAGATGCAATTATTGCAAACCCCCCAGCATATGGGCATACTCATGTGGCGGAGGCACTGAAAATACCTCTTCATATATTTTTTACAATGCCATGGACGCAAGTTGAGGGGGAAACACGTGTCGATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009791 GO:0010154 GO:0016020 GO:0016125 GO:0016740 GO:0016757 GO:0016758 GO:0016906 GO:0022414 GO:0032501 GO:0032502 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051507 GO:0061458 GO:0071704 GO:0071944 GO:0080043 GO:0080044 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

88

Amino Acids

9.76

Weight (kDa)

5.83

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_28	PF03033	4 - 78	2.3e-13	Glycosyltransferase family 28 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285381
rosa_roxburghii	Rroxscaffold_3G00263710 Rroxscaffold_7G00189490 Rroxscaffold_7G00191510
rosa_rugosa	Rorug06G0112100 Rorug06G0112200 Rorug06G0112300 Rorug06G0112400
rosa_samantha	Rh1AG185300 Rh4BG188100 Rh4BG201900 Rh4CG137900 Rh5BG516700 Rh5CG540400 Rh6AG233300 Rh6DG280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	185
AcvI	CACGTG	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	67, 167
AflIII	ACRYGT	2 cut(s)	251, 253
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	254
BceAI	ACGGC	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmsI	GCATC	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 167
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	2 cut(s)	67, 167
BseYI	CCCAGC	1 cut(s)	160
BslI	CCNNNNNNNGG	2 cut(s)	67, 167
Bsp19I	CCATGG	1 cut(s)	227
BspACI	CCGC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	210
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	264
BstDSI	CCRYGG	1 cut(s)	227
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 232
BtgI	CCRYGG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	241
CviAII	CATG	2 cut(s)	179, 228
CviJI	RGCY	3 cut(s)	18, 95, 106
CviKI_1	RGCY	3 cut(s)	18, 95, 106
DdeI	CTNAG	1 cut(s)	264
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	1 cut(s)	32
Eco72I	CACGTG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	2 cut(s)	182, 231
FaiI	YATR	9 cut(s)	77, 79, 166, 168, 174, 180, 210, 212, 229
FatI	CATG	2 cut(s)	178, 227
FauNDI	CATATG	1 cut(s)	166
GsaI	CCCAGC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	241
Hin1II	CATG	2 cut(s)	182, 231
HinfI	GANTC	2 cut(s)	43, 116
Hpy188I	TCNGA	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	45, 61
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	99, 143, 152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 232
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	182, 231
LpnPI	CCDG	5 cut(s)	15, 105, 105, 120, 174
LweI	GCATC	1 cut(s)	130
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	1 cut(s)	197
MluCI	AATT	2 cut(s)	72, 144
MnlI	CCTC	3 cut(s)	181, 213, 235
MseI	TTAA	2 cut(s)	6, 132
MslI	CAYNNNNRTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	149, 232
NcoI	CCATGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	166
NlaIII	CATG	2 cut(s)	182, 231
PfeI	GAWTC	2 cut(s)	43, 116
PflMI	CCANNNNNTGG	1 cut(s)	167
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	32
Psp5II	RGGWCCY	1 cut(s)	32
PspCI	CACGTG	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	177
SaqAI	TTAA	2 cut(s)	6, 132
Sau96I	GGNCC	1 cut(s)	32
SetI	ASST	4 cut(s)	34, 97, 205, 256
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	72, 144
SsiI	CCGC	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	1 cut(s)	258
TasI	AATT	2 cut(s)	72, 144
TfiI	GAWTC	2 cut(s)	43, 116
Tru1I	TTAA	2 cut(s)	6, 132
Tru9I	TTAA	2 cut(s)	6, 132
TscAI	CASTG	1 cut(s)	198
TspDTI	ATGAA	2 cut(s)	80, 197
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.