Rh5CG540400

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015761
Physical Location & Seq
Forward (+)
75523266 .. 75527820
4555 bp
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UTR
Exon/CDS
Intron
Rh5CG540400.1

Sequence Viewer

Length: 324 bp
ATGCACGGTTTACTTTTTCCTGCTTTTTTAGTTATTAATGATGCGTTGTGCGAACAAAGGCTTTGCGACATGAAATACAAAGAAGTGAAGAATTTCTATATGTGTGAAATTCAAAAAGACTTCACAATCGACGCTATTTTTAAAGGAAATCCATCACGATTTCTAAATCACAGCTGTGATCCGAACTGCGTCCTTGAAAAGTGGCAAGTTGAGGGGGAAACACGTGTCGGTGTGTTTGCTGCAAGATCAATAGAAGTCGGAGAGCCATTAACATATGATTATAGGAGGAGAATGGAGGCCCCTACAAGGCATCAATTCCATTGA

Protein Analysis

107

Amino Acids

12.61

Weight (kDa)

6.41

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 11 - 94 1.1e-17 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 91, 108
AcvI CACGTG 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 306
AflIII ACRYGT 2 cut(s) 221, 223
AgsI TTSAA 2 cut(s) 113, 197
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 2 cut(s) 91, 108
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 298
BbrPI CACGTG 1 cut(s) 224
BbvI GCAGC 1 cut(s) 226
BccI CCATC 1 cut(s) 160
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 300
BmsI GCATC 2 cut(s) 31, 319
BsaAI YACGTR 1 cut(s) 224
Bsc4I CCNNNNNNNGG 1 cut(s) 306
BseLI CCNNNNNNNGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 301
BseXI GCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 306
BsnI GGCC 1 cut(s) 299
Bsp143I GATC 2 cut(s) 178, 245
BspANI GGCC 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 300
BspPI GGATC 1 cut(s) 173
BssMI GATC 2 cut(s) 178, 245
Bst4CI ACNGT 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 224
BstKTI GATC 2 cut(s) 181, 248
BstMBI GATC 2 cut(s) 178, 245
BstV1I GCAGC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 298
CseI GACGC 2 cut(s) 140, 178
CviAII CATG 1 cut(s) 70
CviJI RGCY 4 cut(s) 61, 174, 265, 299
CviKI_1 RGCY 4 cut(s) 61, 174, 265, 299
DpnI GATC 2 cut(s) 180, 247
DpnII GATC 2 cut(s) 178, 245
DraI TTTAAA 1 cut(s) 142
Eco72I CACGTG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 298
FaeI CATG 1 cut(s) 73
FaiI YATR 6 cut(s) 71, 99, 101, 274, 276, 282
FatI CATG 1 cut(s) 69
FauNDI CATATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 299
HgaI GACGC 2 cut(s) 140, 178
Hin1II CATG 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 183, 260
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 134
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 4, 242
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 1 cut(s) 73
Kzo9I GATC 2 cut(s) 178, 245
LpnPI CCDG 1 cut(s) 33
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 2 cut(s) 31, 319
MaeII ACGT 1 cut(s) 223
MalI GATC 2 cut(s) 180, 247
MboI GATC 2 cut(s) 178, 245
MboII GAAGA 1 cut(s) 100
MluCI AATT 3 cut(s) 91, 108, 314
MmeI TCCRAC 1 cut(s) 238
MnlI CCTC 3 cut(s) 205, 279, 289
MroXI GAANNNNTTC 1 cut(s) 92
MseI TTAA 3 cut(s) 36, 141, 269
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 174
NdeI CATATG 1 cut(s) 274
NdeII GATC 2 cut(s) 178, 245
NlaIII CATG 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 300
OliI CACNNNNGTG 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 241
PmaCI CACGTG 1 cut(s) 224
PmlI CACGTG 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 224
PshBI ATTAAT 1 cut(s) 36
PspCI CACGTG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 298
PvuII CAGCTG 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 36, 141, 269
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 2 cut(s) 178, 245
Sau96I GGNCC 1 cut(s) 298
SetI ASST 2 cut(s) 176, 226
SfaNI GCATC 2 cut(s) 31, 319
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 3 cut(s) 91, 108, 314
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 226
TaqI TCGA 1 cut(s) 129
TasI AATT 3 cut(s) 91, 108, 314
Tru1I TTAA 3 cut(s) 36, 141, 269
Tru9I TTAA 3 cut(s) 36, 141, 269
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 86
VspI ATTAAT 1 cut(s) 36
XapI RAATTY 2 cut(s) 91, 108
XmnI GAANNNNTTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.