Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015761

Physical Location & Seq

Genomic Coordinates Reverse (-)

15283293 .. 15285793

Gene Structure 2501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0112300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAATAGTTCACTGACCCTTTTACCCTTACATATTTTGCCGACTGCTGAGTTCATCCGAACTGGCCAAGCAAGATTGACCGAATGGGCCGAAAGGATACAGCCGTGGAAGAAGAAGTTAGATATCAGTTTAGTAGTGTCATTTTGCACTACAAGAAGTCATTCATATACAAGACAATGCATAAGAGTTTCACCCTTAACATTTGAACTCAAGGCTACTTTGAAATTGACAAGGTTCCTTTGCAGCCTTTTCAAGTCTTCAGGTACCTTAGAATGGTGCTATAATCGATTTTCCGAGTTTCAAGCTTTGTGCAAGTGCACTGGTGGTATAAGCATTCACAGTGAGGAAGAGGAAAGCTTCAGAGTCACTCTTCTCATTGAAGATGAGACTGAGCAAGCACATGCAGTCTTAATGGACAAAGAAGCAGAAGAAATCTGTGGAATCTCATGCGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0006629 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0008202 GO:0009791 GO:0010154 GO:0016020 GO:0016125 GO:0016740 GO:0016757 GO:0016758 GO:0016906 GO:0022414 GO:0032501 GO:0032502 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046527 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051507 GO:0061458 GO:0071704 GO:0071944 GO:0080043 GO:0080044 GO:1901360 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_28 UDPGT

Protein Analysis

152

Amino Acids

17.41

Weight (kDa)

5.62

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285381
rosa_roxburghii	Rroxscaffold_3G00263710 Rroxscaffold_7G00189490 Rroxscaffold_7G00191510
rosa_rugosa	Rorug06G0112100 Rorug06G0112200 Rorug06G0112300 Rorug06G0112400
rosa_samantha	Rh1AG185300 Rh4BG188100 Rh4BG201900 Rh4CG137900 Rh5BG516700 Rh5CG540400 Rh6AG233300 Rh6DG280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	2 cut(s)	243, 343
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgsI	TTSAA	5 cut(s)	206, 223, 253, 302, 380
AluBI	AGCT	2 cut(s)	305, 357
AluI	AGCT	2 cut(s)	305, 357
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	380
Alw44I	GTGCAC	1 cut(s)	316
AoxI	GGCC	2 cut(s)	64, 87
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	160
Asp718I	GGTACC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	320
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BalI	TGGCCA	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	263
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	255
BceAI	ACGGC	1 cut(s)	88
BciVI	GTATCC	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	236, 265
BpiI	GAAGAC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	194
Bsa29I	ATCGAT	1 cut(s)	286
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse1I	ACTGG	2 cut(s)	67, 325
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	39, 381
BseNI	ACTGG	2 cut(s)	67, 325
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	255
BshFI	GGCC	2 cut(s)	66, 89
BshNI	GGYRCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	333
BsnI	GGCC	2 cut(s)	66, 89
Bsp1286I	GDGCHC	1 cut(s)	320
BspANI	GGCC	2 cut(s)	66, 89
BspCNI	CTCAG	2 cut(s)	40, 382
BspDI	ATCGAT	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	236, 265
BspT107I	GGYRCC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	67, 325
BssECI	CCNNGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	2 cut(s)	342, 375
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	3 cut(s)	48, 268, 390
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	404
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	249
Bsu15I	ATCGAT	1 cut(s)	286
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	66, 89
BsuTUI	ATCGAT	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	11, 318, 346
Cac8I	GCNNGC	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	87
ClaI	ATCGAT	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	2 cut(s)	401, 447
CviJI	RGCY	7 cut(s)	66, 89, 103, 215, 246, 305, 357
CviKI_1	RGCY	7 cut(s)	66, 89, 103, 215, 246, 305, 357
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	3 cut(s)	48, 268, 390
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	342, 375
EarI	CTCTTC	2 cut(s)	342, 375
Eco32I	GATATC	1 cut(s)	124
Eco57I	CTGAAG	2 cut(s)	243, 343
EcoRV	GATATC	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	182
FaeI	CATG	2 cut(s)	404, 450
FaiI	YATR	8 cut(s)	33, 166, 168, 182, 282, 329, 402, 448
FatI	CATG	2 cut(s)	400, 446
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	244
FspBI	CTAG	1 cut(s)	457
GluI	GCNGC	1 cut(s)	244
HaeIII	GGCC	2 cut(s)	66, 89
Hin1II	CATG	2 cut(s)	404, 450
HindIII	AAGCTT	2 cut(s)	303, 355
HinfI	GANTC	2 cut(s)	363, 441
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	2 cut(s)	11, 318
Hpy188I	TCNGA	3 cut(s)	59, 295, 362
Hpy8I	GTNNAC	2 cut(s)	11, 318
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4V	TGCA	6 cut(s)	147, 180, 243, 312, 318, 404
HpyF3I	CTNAG	3 cut(s)	48, 268, 390
Hsp92II	CATG	2 cut(s)	404, 450
KpnI	GGTACC	1 cut(s)	267
LpnPI	CCDG	3 cut(s)	48, 246, 306
Lsp1109I	GCAGC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	457
MaeIII	GTNAC	1 cut(s)	364
MboII	GAAGA	7 cut(s)	121, 124, 249, 359, 362, 392, 440
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	66
MluCI	AATT	1 cut(s)	224
MluNI	TGGCCA	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	372
MnlI	CCTC	3 cut(s)	337, 343, 445
Mox20I	TGGCCA	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	66
MseI	TTAA	2 cut(s)	197, 410
Msp20I	TGGCCA	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	333
NlaIII	CATG	2 cut(s)	404, 450
NlaIV	GGNNCC	2 cut(s)	236, 265
NmuCI	GTSAC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	1 cut(s)	404
PctI	GAATGC	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	441
PkrI	GCNGC	1 cut(s)	245
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	236, 265
PspPI	GGNCC	1 cut(s)	87
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	197, 410
SatI	GCNGC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	5 cut(s)	236, 265, 269, 307, 359
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	224
SspMI	CTAG	1 cut(s)	457
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	286
TaqII	GACCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	441
Tru1I	TTAA	2 cut(s)	197, 410
Tru9I	TTAA	2 cut(s)	197, 410
TscAI	CASTG	3 cut(s)	18, 325, 346
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	3 cut(s)	17, 43, 153
TspRI	CASTG	3 cut(s)	18, 325, 346
VneI	GTGCAC	1 cut(s)	316
XceI	RCATGY	1 cut(s)	404
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.