Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0015761

Physical Location & Seq

Genomic Coordinates Forward (+)

81817242 .. 81817598

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG516700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCACGGTTTACTTTTTCCTGCTTTTTTAGTTATTAATGATGCGTTGTGCGAACAAAGGCTTTGCGACATGAAATACAAAGAAGTGAAGAATTTCTATATGTGTGAAATTCAAAAAGACTTCACAATCGACGCTATTTTTAAAGGAAATCCATCACGATTTCTAAATCACAGCTGTGATCCGAACTGCGTCCTTGAAAAGTGGTTAGTGTGGTTTGACAGTACTACTTGTATCTTGCTTTGCAATTTGAGATATTGCCCGCTTCCAGATTTTGTTAAGATAATTTGCTCTTTCAATGTTGTTTTTAATCTTATAATTATTGAAGTGGTTATGTATATCCTATATGCTCGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

SET

Protein Analysis

118

Amino Acids

13.9

Weight (kDa)

6.05

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SET	PF00856	11 - 80	6.2e-09	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015761)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285381
rosa_roxburghii	Rroxscaffold_3G00263710 Rroxscaffold_7G00189490 Rroxscaffold_7G00191510
rosa_rugosa	Rorug06G0112100 Rorug06G0112200 Rorug06G0112300 Rorug06G0112400
rosa_samantha	Rh1AG185300 Rh4BG188100 Rh4BG201900 Rh4CG137900 Rh5BG516700 Rh5CG540400 Rh6AG233300 Rh6DG280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	2 cut(s)	91, 108
AfaI	GTAC	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	113, 197, 295, 323
AleI	CACNNNNGTG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
AlwI	GGATC	1 cut(s)	173
ApoI	RAATTY	2 cut(s)	91, 108
AseI	ATTAAT	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	92
BauI	CACGAG	1 cut(s)	348
BccI	CCATC	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	223
BmsI	GCATC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	178
BspACI	CCGC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	173
BssMI	GATC	1 cut(s)	178
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	8, 221
BstC8I	GCNNGC	1 cut(s)	260
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	260
CseI	GACGC	2 cut(s)	140, 178
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	2 cut(s)	61, 174
CviKI_1	RGCY	2 cut(s)	61, 174
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
DraI	TTTAAA	1 cut(s)	142
FaeI	CATG	1 cut(s)	73
FaiI	YATR	8 cut(s)	71, 99, 101, 314, 332, 336, 343, 345
FatI	CATG	1 cut(s)	69
FauI	CCCGC	1 cut(s)	267
HgaI	GACGC	2 cut(s)	140, 178
Hin1II	CATG	1 cut(s)	73
Hpy166II	GTNNAC	1 cut(s)	11
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	156, 266
Hpy8I	GTNNAC	1 cut(s)	11
Hpy99I	CGWCG	1 cut(s)	134
HpyCH4III	ACNGT	2 cut(s)	8, 221
HpyCH4V	TGCA	2 cut(s)	4, 243
Hsp92II	CATG	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	2 cut(s)	33, 279
LweI	GCATC	1 cut(s)	31
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	1 cut(s)	100
MluCI	AATT	5 cut(s)	91, 108, 244, 282, 315
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	5 cut(s)	36, 141, 276, 306, 355
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	174
NdeII	GATC	1 cut(s)	178
NlaIII	CATG	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	174
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	5 cut(s)	36, 141, 276, 306, 355
Sau3AI	GATC	1 cut(s)	178
ScaI	AGTACT	1 cut(s)	223
SetI	ASST	1 cut(s)	176
SfaNI	GCATC	1 cut(s)	31
SgeI	CNNG	9 cut(s)	17, 32, 82, 168, 206, 240, 247, 271, 278
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	5 cut(s)	91, 108, 244, 282, 315
SsiI	CCGC	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	8, 221
TaqI	TCGA	1 cut(s)	129
TasI	AATT	5 cut(s)	91, 108, 244, 282, 315
TatI	WGTACW	1 cut(s)	221
Tru1I	TTAA	5 cut(s)	36, 141, 276, 306, 355
Tru9I	TTAA	5 cut(s)	36, 141, 276, 306, 355
TspDTI	ATGAA	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	36
XapI	RAATTY	2 cut(s)	91, 108
XmnI	GAANNNNTTC	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.