Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012656

Physical Location & Seq

Genomic Coordinates Forward (+)

21562338 .. 21564499

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGGCCATCGTCAGTTTCAAAAAAGACTCTCAGTCCTATTGTAGCGGTTGTGTCCTGTTTCTGCAACTGTTCTATTTTGATTGTGTTTCACATGGGAAGACCATTGTGGAAAAGTCCTTGTACCCAGTTGAAGCTTGGGGGGACCATAAAACGGGCAAACTGCTCAAATGGGTGAACAAGCAAGGTGGTTTGATGGATGAAAATGTTCTTATGGCAAAGGTTGGTGATCGTGTTGGTAGTGGAGATCAGACCAAAGCATATGGGTTGATTAAGAAAGAAATGTCTGACTTGGCTGCTAAAGTGAGTGGGTTGGAAAATAATATGTGCAATCTGAGAGATGATATGATGGGAAAGATGGACAAAGTCTTGAGTATGCTGAACACTCTGACTGCACAAAATGTGAATGTCAATCAGAACCTTCAAACTGATGGCTTAGCAGAAAAAGTAAGCCCCAAGAAAGTTTCAAAAAAGAAAGCTGGAGAGCAACAGGAGGTGTTACAGGTACATGGGGAAGACTTGCAACCAAAAAAGAAGACCTCCTTGATTTGCCTATCTAACTCAACATCTGTAGTCAGCCCACTGAAAAGTATGAAGAAAGTTGATGCCAACCCCACGACCGAGAGTAACATAGAGAAGATTTGTAACTTCAAAGTCAAGGGAGATCGGGAGGAGGCTGACAAAGGAGTGCTCAGGTTTGTTTATGATGTGTCAGCTGAAGAGAAGGAGACCATTGTTGATAGTGAAAATTTCTTCACTAGTCGAAAATTGCAAACACTGGACATTATCTACCACCATGTGGAGTTCAAAGTCAAGAATGTTGTGAAGAAGTTTGCTGACTTCCATGTATTCGAGCCGGCTCAATGCCCTAAACAAGAGGGCGGTTCTAACTGTGGGGTGTATGTGATCAAACACATGCAGTGTTATGGATCTGAGTGGTGGCATCAGTTTAACTCAGAAGAAGTACGCATGGACTTAACCATTGAATTGGTAAGGAACAAATTCAATGAGTGCTGGAAATGGATCGAGGAAGCCATCAAAACTCGGCCACCACCAATATGTTCTACACCTAAGATGGCACAAAGGGAAACTAAAGCAGCACCTAAGAAAGGGACCGTGAAGAACCCAATCGTCCAACCACCTCTCACTAGAGCTCAATCTAAGAGGGGTGTGGCATCAAATGTCCGTCGTAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase_Tyr

Protein Analysis

399

Amino Acids

45.04

Weight (kDa)

9.08

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33120
malus_domestica	MD01G1230400.v1.1
prunus_persica	Prupe.2G321100_v2.0.a1
pyrus_communis	pycom01g23840
rosa_chinensis	RchiOBHm_Chr1g0334661 RchiOBHm_Chr1g0383191
rosa_laevigata	RLG00000026124
rosa_multiflora	Rmu_sc0008563.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277520
rosa_rugosa	Rorug01G0126300 Rorug01G0439400
rosa_samantha	Rh1AG139900 Rh1AG465000 Rh1BG422400 Rh1CG131800 Rh1CG435600 Rh1DG143800 Rh1DG455100
rosa_wichuraiana	Rw1G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1185
Acc36I	ACCTGC	1 cut(s)	1185
AccB7I	CCANNNNNTGG	1 cut(s)	799
AciI	CCGC	2 cut(s)	48, 882
AclWI	GGATC	2 cut(s)	937, 1031
AcoI	YGGCCR	1 cut(s)	1046
AcsI	RAATTY	2 cut(s)	748, 1001
AcuI	CTGAAG	1 cut(s)	738
AdeI	CACNNNGTG	1 cut(s)	799
AfaI	GTAC	3 cut(s)	125, 507, 966
AfiI	CCNNNNNNNGG	3 cut(s)	154, 799, 1109
AgsI	TTSAA	8 cut(s)	22, 134, 425, 468, 652, 808, 986, 1006
AhdI	GACNNNNNGTC	1 cut(s)	34
AhlI	ACTAGT	1 cut(s)	758
AluBI	AGCT	4 cut(s)	137, 479, 716, 1154
AluI	AGCT	4 cut(s)	137, 479, 716, 1154
Alw21I	GWGCWC	2 cut(s)	693, 1156
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	2 cut(s)	937, 1031
AoxI	GGCC	2 cut(s)	6, 1046
ApeKI	GCWGC	2 cut(s)	296, 1097
ApoI	RAATTY	2 cut(s)	748, 1001
Asp700I	GAANNNNTTC	2 cut(s)	207, 1001
AspS9I	GGNCC	2 cut(s)	145, 1113
AsuHPI	GGTGA	2 cut(s)	187, 239
AvaII	GGWCC	2 cut(s)	145, 1113
BanII	GRGCYC	1 cut(s)	1156
BbsI	GAAGAC	3 cut(s)	107, 522, 542
Bbv12I	GWGCWC	2 cut(s)	693, 1156
BbvI	GCAGC	2 cut(s)	283, 1109
BccI	CCATC	7 cut(s)	17, 190, 343, 352, 425, 1043, 1069
BclI	TGATCA	1 cut(s)	906
BcoDI	GTCTC	1 cut(s)	722
BcuI	ACTAGT	1 cut(s)	758
BfaI	CTAG	2 cut(s)	759, 1149
BfmI	CTRYAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	1185
BisI	GCNGC	2 cut(s)	297, 1098
BlpI	GCTNAGC	1 cut(s)	436
BlsI	GCNGC	2 cut(s)	298, 1099
Bme18I	GGWCC	2 cut(s)	145, 1113
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	145, 1113
BmiI	GGNNCC	2 cut(s)	146, 1114
BmrI	ACTGGG	1 cut(s)	122
BmsI	GCATC	3 cut(s)	595, 952, 1184
BmuI	ACTGGG	1 cut(s)	122
BpiI	GAAGAC	3 cut(s)	107, 522, 542
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	692
Bpu1102I	GCTNAGC	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	391
BsaI	GGTCTC	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 799, 1109
Bse118I	RCCGGY	1 cut(s)	856
Bse1I	ACTGG	2 cut(s)	128, 783
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	3 cut(s)	154, 799, 1109
BseMII	CTCAG	5 cut(s)	47, 326, 706, 924, 969
BseNI	ACTGG	2 cut(s)	128, 783
BseRI	GAGGAG	1 cut(s)	686
BseXI	GCAGC	2 cut(s)	283, 1109
BsgI	GTGCAG	1 cut(s)	378
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	8, 1048
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	2 cut(s)	693, 1156
BsiSI	CCGG	1 cut(s)	857
BslFI	GGGAC	2 cut(s)	158, 1126
BslI	CCNNNNNNNGG	3 cut(s)	154, 799, 1109
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	2 cut(s)	158, 1126
BsnI	GGCC	2 cut(s)	8, 1048
Bso31I	GGTCTC	1 cut(s)	722
Bsp1286I	GDGCHC	2 cut(s)	693, 1156
Bsp143I	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
Bsp1720I	GCTNAGC	1 cut(s)	436
BspACI	CCGC	2 cut(s)	48, 882
BspANI	GGCC	2 cut(s)	8, 1048
BspCNI	CTCAG	5 cut(s)	46, 327, 705, 925, 968
BspLI	GGNNCC	2 cut(s)	146, 1114
BspMI	ACCTGC	1 cut(s)	1185
BspPI	GGATC	2 cut(s)	937, 1031
BspTNI	GGTCTC	1 cut(s)	722
BsrFI	RCCGGY	1 cut(s)	856
BsrI	ACTGG	2 cut(s)	128, 783
BssAI	RCCGGY	1 cut(s)	856
BssMI	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
Bst4CI	ACNGT	3 cut(s)	72, 893, 1117
Bst6I	CTCTTC	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	9 cut(s)	33, 335, 436, 692, 933, 955, 1071, 1104, 1161
BstENI	CCTNNNNNAGG	1 cut(s)	1107
BstF5I	GGATG	1 cut(s)	205
BstKTI	GATC	6 cut(s)	232, 250, 667, 909, 932, 1026
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
BstMCI	CGRYCG	1 cut(s)	621
BstNSI	RCATGY	1 cut(s)	919
BstSFI	CTRYAG	1 cut(s)	570
BstV1I	GCAGC	2 cut(s)	283, 1109
BstV2I	GAAGAC	3 cut(s)	107, 522, 542
BstX2I	RGATCY	1 cut(s)	929
BstXI	CCANNNNNNTGG	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	929
BsuRI	GGCC	2 cut(s)	8, 1048
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	926
BtsIMutI	CAGTG	3 cut(s)	581, 776, 926
BveI	ACCTGC	1 cut(s)	1185
Cac8I	GCNNGC	1 cut(s)	858
Cfr10I	RCCGGY	1 cut(s)	856
Cfr13I	GGNCC	2 cut(s)	145, 1113
Csp6I	GTAC	3 cut(s)	124, 506, 965
CspCI	CAANNNNNGTGG	2 cut(s)	169, 204
CviAII	CATG	6 cut(s)	95, 509, 797, 845, 916, 970
CviQI	GTAC	3 cut(s)	124, 506, 965
DdeI	CTNAG	9 cut(s)	33, 335, 436, 692, 933, 955, 1071, 1104, 1161
DpnI	GATC	6 cut(s)	231, 249, 666, 908, 931, 1025
DpnII	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
DraIII	CACNNNGTG	1 cut(s)	799
DriI	GACNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	1046
Eam1104I	CTCTTC	1 cut(s)	714
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	1 cut(s)	1154
Eco24I	GRGCYC	1 cut(s)	1156
Eco31I	GGTCTC	1 cut(s)	722
Eco47I	GGWCC	2 cut(s)	145, 1113
Eco53kI	GAGCTC	1 cut(s)	1154
Eco57I	CTGAAG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	1154
EcoNI	CCTNNNNNAGG	1 cut(s)	1107
EcoT38I	GRGCYC	1 cut(s)	1156
FaeI	CATG	6 cut(s)	98, 512, 800, 848, 919, 973
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	2 cut(s)	158, 1126
FatI	CATG	6 cut(s)	94, 508, 796, 844, 915, 969
FauNDI	CATATG	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	906
Fnu4HI	GCNGC	2 cut(s)	297, 1098
FokI	GGATG	1 cut(s)	212
FriOI	GRGCYC	1 cut(s)	1156
Fsp4HI	GCNGC	2 cut(s)	297, 1098
FspBI	CTAG	2 cut(s)	759, 1149
GluI	GCNGC	2 cut(s)	297, 1098
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	2 cut(s)	8, 1048
HapII	CCGG	1 cut(s)	857
Hin1II	CATG	6 cut(s)	98, 512, 800, 848, 919, 973
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	1 cut(s)	857
HphI	GGTGA	2 cut(s)	187, 239
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	7 cut(s)	252, 289, 336, 390, 417, 934, 958
Hpy188III	TCNNGA	3 cut(s)	370, 668, 814
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	1191
HpyAV	CCTTC	2 cut(s)	431, 718
HpyCH4III	ACNGT	3 cut(s)	72, 893, 1117
HpyCH4V	TGCA	6 cut(s)	67, 330, 395, 523, 772, 919
HpyF3I	CTNAG	9 cut(s)	33, 335, 436, 692, 933, 955, 1071, 1104, 1161
Hsp92II	CATG	6 cut(s)	98, 512, 800, 848, 919, 973
KroI	GCCGGC	1 cut(s)	856
KroNI	GCCGGC	1 cut(s)	858
Ksp22I	TGATCA	1 cut(s)	906
Kzo9I	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
Lsp1109I	GCAGC	2 cut(s)	283, 1109
LweI	GCATC	3 cut(s)	595, 952, 1184
MaeI	CTAG	2 cut(s)	759, 1149
MaeIII	GTNAC	3 cut(s)	498, 626, 644
MalI	GATC	6 cut(s)	231, 249, 666, 908, 931, 1025
MboI	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	2 cut(s)	693, 1156
MluCI	AATT	4 cut(s)	748, 767, 986, 1001
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	2 cut(s)	294, 1159
MnlI	CCTC	8 cut(s)	487, 550, 664, 667, 871, 1021, 1152, 1158
MroNI	GCCGGC	1 cut(s)	856
MroXI	GAANNNNTTC	2 cut(s)	207, 1001
MseI	TTAA	3 cut(s)	273, 951, 977
MslI	CAYNNNNRTG	1 cut(s)	1057
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	1 cut(s)	857
NaeI	GCCGGC	1 cut(s)	858
NdeI	CATATG	1 cut(s)	262
NdeII	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
NgoMIV	GCCGGC	1 cut(s)	856
NlaIII	CATG	6 cut(s)	98, 512, 800, 848, 919, 973
NlaIV	GGNNCC	2 cut(s)	146, 1114
NmeAIII	GCCGAG	1 cut(s)	1024
NspI	RCATGY	1 cut(s)	919
PaqCI	CACCTGC	1 cut(s)	1185
PdiI	GCCGGC	1 cut(s)	858
PdmI	GAANNNNTTC	2 cut(s)	207, 1001
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	298, 1099
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp124BI	GAGCTC	1 cut(s)	1156
PspN4I	GGNNCC	2 cut(s)	146, 1114
PspPI	GGNCC	2 cut(s)	145, 1113
PsuI	RGATCY	1 cut(s)	929
PsyI	GACNNNGTC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	125, 507, 966
RsaNI	GTAC	3 cut(s)	124, 506, 965
RseI	CAYNNNNRTG	1 cut(s)	1057
SacI	GAGCTC	1 cut(s)	1156
SaqAI	TTAA	3 cut(s)	273, 951, 977
SatI	GCNGC	2 cut(s)	297, 1098
Sau3AI	GATC	6 cut(s)	229, 247, 664, 906, 929, 1023
Sau96I	GGNCC	2 cut(s)	145, 1113
SchI	GAGTC	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	693, 1156
SfaNI	GCATC	3 cut(s)	595, 952, 1184
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	2 cut(s)	145, 1113
SmiMI	CAYNNNNRTG	1 cut(s)	1057
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
SpeI	ACTAGT	1 cut(s)	758
Sse9I	AATT	4 cut(s)	748, 767, 986, 1001
SsiI	CCGC	2 cut(s)	48, 882
SspMI	CTAG	2 cut(s)	759, 1149
SstI	GAGCTC	1 cut(s)	1156
TaaI	ACNGT	3 cut(s)	72, 893, 1117
TaqI	TCGA	3 cut(s)	763, 852, 1026
TaqII	GACCGA	1 cut(s)	635
TasI	AATT	4 cut(s)	748, 767, 986, 1001
Tru1I	TTAA	3 cut(s)	273, 951, 977
Tru9I	TTAA	3 cut(s)	273, 951, 977
TscAI	CASTG	3 cut(s)	588, 783, 926
TseI	GCWGC	2 cut(s)	296, 1097
TspDTI	ATGAA	2 cut(s)	216, 608
TspGWI	ACGGA	1 cut(s)	1175
TspRI	CASTG	3 cut(s)	588, 783, 926
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	799
VpaK11BI	GGWCC	2 cut(s)	145, 1113
XagI	CCTNNNNNAGG	1 cut(s)	1107
XapI	RAATTY	2 cut(s)	748, 1001
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XmnI	GAANNNNTTC	2 cut(s)	207, 1001
XspI	CTAG	2 cut(s)	759, 1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.