Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0012656

Physical Location & Seq

Genomic Coordinates Forward (+)

30273540 .. 30275078

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGAGTTGCTTCAACTGGTTGCTCTATTTAGCTGCTGCTTTGGCCGTGATACGCAACGAGCTTCTAGTTGATTCAGCTAGTGACAAGAAGCACCACAGCGGACCAGTTGTTAATGTGACCAAGCACCTCATTGCTATACAAATCCCCGACGAGTCTCATGTCACTGATCTCAGACACCAAGCCGGCCGAGCCATCTACTCTTCTTCAATCCGACTCCTGGACCCTCACACCAAAACCCCTGCCTCTTTCGAAACAACCTTCTCTTTTCAATTCCACAATGCCTCTTCATCTTCTCCTGAACGAATCCAAACTACTCAAAGCGGTGGTTATGGTAATGGCGGCAGTGGACTAGCCTTCGTTATCGTCCCGGATGAGTTCACAGTTGGCAGACCTGGTGCTTGGCTTGCCATGCTCAACGATGCTTGTGAAGATGACTACAAGGTTATAGCAATCGAATTCGACACACGTTTGAATCCAGAGTTTGGAGACCCTAATGATAACCATGTAGGTATCAACTTGGGGACTATTATCTCCACTGAAACAATCAACGCTTCTGATGTTGGCGTCTTCCTCAACGACGGTTCAGTCCACCGAGCTTGGATAAGCTACAACGGCTCACGCCGTTGGATGGAAATTCGTTTGGGATCAGACGACGGAAGTTACCCTACAAAGCTAGTCTTCTCCGGATCTCTTGACCTCTCACCGTTTCTGAATGAGTACATGTTCGTTGGATTTTCGGCTTCCACAGGCAATCACACCCAAATCCACAGCGTGCTTTCTTGGAACTTCACTTCTGTTAGTCAAGCTTTTCTTCGTGTGCCGTCAATGGAGACATGTGAGAGCAAGATTGTTGTTACTGAAAACTCTCGTGTTGAGCCTCCCGGCACGTACTTGATCTTTATAGCTGTGCTGGCACTTGCCATAGCTGTTATGCTTAGCCTTTACTATAACAGCAAGCGTAGAAGTGCAAATTCGGATAGTGCTAGTATAGTGTTGCCGGAGAAGAAGCAGAGACCGAGACCTCCAAACAAGCCTAGAAGCTTCACAATCTCGGAGATTTCATTGGCGACTAGGTCTTTCGGAGAGCTAGAGATACTTGGAGGTGGATCAAAAGGGGTGTGCTACCGAGGGAAGCTTCCGAACGGATGTCAAGTGGCAGTGAAGCGGTTTTCGCCTCAGTTTCTGAACTCACAAGGGTTGGATAGGAGGAGATTGATGAAGGAAATCAAGGGGATTAGCAGGGTTAGACACCCGAACTTAGTTTCCATTAGAGGATGGTGTCAGGACAAGAAAGAGACTATGGTTGTGTATGAGTTTTTCTCCAATGGAAGCCTTGATAAGTGGCTGTTTGGTGTTGGTGTTCTTCCGTGGACTCGGAGGTTGATGCAGAACAGATGGCAGTCCAATTTGAAGAACAATTGGATCGTGCCAAAGGTGGAAAACGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase_Tyr

Protein Analysis

483

Amino Acids

53.83

Weight (kDa)

8.99

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_L-type_dom	PF18483	55 - 257	3.5e-09	Legume lectin beta-barrel domain
Lectin_legB	PF00139	56 - 267	1.9e-49	Legume lectin domain
Pkinase	PF00069	362 - 449	8e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	364 - 449	6.5e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33120
malus_domestica	MD01G1230400.v1.1
prunus_persica	Prupe.2G321100_v2.0.a1
pyrus_communis	pycom01g23840
rosa_chinensis	RchiOBHm_Chr1g0334661 RchiOBHm_Chr1g0383191
rosa_laevigata	RLG00000026124
rosa_multiflora	Rmu_sc0008563.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277520
rosa_rugosa	Rorug01G0126300 Rorug01G0439400
rosa_samantha	Rh1AG139900 Rh1AG465000 Rh1BG422400 Rh1CG131800 Rh1CG435600 Rh1DG143800 Rh1DG455100
rosa_wichuraiana	Rw1G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	584
AccB7I	CCANNNNNTGG	1 cut(s)	482
AccIII	TCCGGA	1 cut(s)	683
AciI	CCGC	4 cut(s)	99, 321, 339, 1165
AclWI	GGATC	4 cut(s)	652, 694, 1114, 1430
AcoI	YGGCCR	2 cut(s)	42, 184
AcsI	RAATTY	3 cut(s)	455, 633, 970
AcyI	GRCGYC	1 cut(s)	564
AdeI	CACNNNGTG	1 cut(s)	772
AfaI	GTAC	2 cut(s)	719, 890
AfiI	CCNNNNNNNGG	3 cut(s)	217, 482, 628
AflIII	ACRYGT	3 cut(s)	464, 720, 833
AgsI	TTSAA	5 cut(s)	13, 207, 269, 472, 1411
AjnI	CCWGG	2 cut(s)	216, 391
AloI	GAACNNNNNNTCC	2 cut(s)	1247, 1279
Alw26I	GTCTC	6 cut(s)	159, 480, 824, 1006, 1012, 1289
AlwI	GGATC	4 cut(s)	652, 694, 1114, 1430
AlwNI	CAGNNNCTG	1 cut(s)	1183
Aor13HI	TCCGGA	1 cut(s)	683
AoxI	GGCC	2 cut(s)	42, 184
ApeKI	GCWGC	2 cut(s)	32, 35
ApoI	RAATTY	3 cut(s)	455, 633, 970
AspS9I	GGNCC	2 cut(s)	101, 220
AsuC2I	CCSGG	2 cut(s)	368, 882
AsuHPI	GGTGA	1 cut(s)	693
AsuII	TTCGAA	1 cut(s)	249
AvaII	GGWCC	2 cut(s)	101, 220
BarI	GAAGNNNNNNTAC	2 cut(s)	649, 681
BauI	CACGAG	1 cut(s)	867
BbsI	GAAGAC	2 cut(s)	559, 670
BbvI	GCAGC	2 cut(s)	19, 22
BccI	CCATC	4 cut(s)	200, 622, 1269, 1389
BceAI	ACGGC	4 cut(s)	29, 606, 628, 805
BciT130I	CCWGG	2 cut(s)	218, 393
BcnI	CCSGG	2 cut(s)	368, 882
BcoDI	GTCTC	6 cut(s)	159, 480, 824, 1006, 1012, 1289
BfaI	CTAG	8 cut(s)	65, 78, 350, 674, 984, 1035, 1071, 1088
BisI	GCNGC	3 cut(s)	33, 36, 340
BlpI	GCTNAGC	1 cut(s)	935
BlsI	GCNGC	3 cut(s)	34, 37, 341
Bme1390I	CCNGG	4 cut(s)	218, 368, 393, 882
Bme18I	GGWCC	2 cut(s)	101, 220
BmgT120I	GGNCC	2 cut(s)	101, 220
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	4 cut(s)	218, 368, 393, 882
BmsI	GCATC	2 cut(s)	409, 1374
BpiI	GAAGAC	2 cut(s)	559, 670
BplI	GAGNNNNNCTC	2 cut(s)	1304, 1336
Bpu1102I	GCTNAGC	1 cut(s)	935
Bpu14I	TTCGAA	1 cut(s)	249
BpuMI	CCSGG	2 cut(s)	368, 882
BsaAI	YACGTR	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	564
BsaI	GGTCTC	3 cut(s)	480, 1006, 1012
BsaJI	CCNNGG	2 cut(s)	1126, 1367
BsaWI	WCCGGW	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 482, 628
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	20, 104
Bse3DI	GCAATG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	683
BseBI	CCWGG	2 cut(s)	218, 393
BseDI	CCNNGG	2 cut(s)	1126, 1367
BseGI	GGATG	4 cut(s)	376, 633, 1151, 1280
BseLI	CCNNNNNNNGG	3 cut(s)	217, 482, 628
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	184, 1190
BseNI	ACTGG	2 cut(s)	20, 104
BseRI	GAGGAG	1 cut(s)	1222
BseX3I	CGGCCG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	19, 22
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	44, 186
BsiEI	CGRYCG	1 cut(s)	187
BsiSI	CCGG	5 cut(s)	183, 368, 684, 882, 998
BslFI	GGGAC	2 cut(s)	350, 535
BslI	CCNNNNNNNGG	3 cut(s)	217, 482, 628
BsmAI	GTCTC	6 cut(s)	159, 480, 824, 1006, 1012, 1289
BsmFI	GGGAC	2 cut(s)	350, 535
BsnI	GGCC	2 cut(s)	44, 186
Bso31I	GGTCTC	3 cut(s)	480, 1006, 1012
Bsp119I	TTCGAA	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	683
Bsp143I	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
Bsp1720I	GCTNAGC	1 cut(s)	935
BspACI	CCGC	4 cut(s)	99, 321, 339, 1165
BspANI	GGCC	2 cut(s)	44, 186
BspCNI	CTCAG	2 cut(s)	183, 1189
BspEI	TCCGGA	1 cut(s)	683
BspLI	GGNNCC	1 cut(s)	222
BspPI	GGATC	4 cut(s)	652, 694, 1114, 1430
BspT104I	TTCGAA	1 cut(s)	249
BspTNI	GGTCTC	3 cut(s)	480, 1006, 1012
BsrDI	GCAATG	1 cut(s)	129
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	20, 104
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	1126, 1367
BssMI	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
BssNI	GRCGYC	1 cut(s)	564
BssSI	CACGAG	1 cut(s)	867
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	2 cut(s)	218, 393
Bst4CI	ACNGT	3 cut(s)	382, 581, 705
Bst6I	CTCTTC	2 cut(s)	205, 289
BstACI	GRCGYC	1 cut(s)	564
BstBAI	YACGTR	1 cut(s)	888
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	5 cut(s)	184, 405, 773, 912, 956
BstDEI	CTNAG	4 cut(s)	170, 935, 1176, 1258
BstDSI	CCRYGG	1 cut(s)	1367
BstF5I	GGATG	4 cut(s)	376, 633, 1151, 1280
BstKTI	GATC	6 cut(s)	169, 647, 689, 897, 1109, 1425
BstMAI	GTCTC	6 cut(s)	159, 480, 824, 1006, 1012, 1289
BstMBI	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 188, 404, 409, 612, 911, 1171
BstNI	CCWGG	2 cut(s)	218, 393
BstNSI	RCATGY	2 cut(s)	724, 837
BstSCI	CCNGG	4 cut(s)	216, 366, 391, 880
BstV1I	GCAGC	2 cut(s)	19, 22
BstV2I	GAAGAC	2 cut(s)	559, 670
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
BstZI	CGGCCG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	44, 186
BtgI	CCRYGG	1 cut(s)	1367
BtsCI	GGATG	4 cut(s)	376, 633, 1151, 1280
BtsI	GCAGTG	2 cut(s)	349, 1164
BtsIMutI	CAGTG	4 cut(s)	162, 349, 534, 1164
Cac8I	GCNNGC	5 cut(s)	184, 405, 773, 912, 956
CaiI	CAGNNNCTG	1 cut(s)	1183
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	2 cut(s)	101, 220
CseI	GACGC	1 cut(s)	553
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	718, 889
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	5 cut(s)	158, 409, 503, 721, 834
CviQI	GTAC	2 cut(s)	718, 889
DdeI	CTNAG	4 cut(s)	170, 935, 1176, 1258
DpnI	GATC	6 cut(s)	168, 646, 688, 896, 1108, 1424
DpnII	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
DraIII	CACNNNGTG	1 cut(s)	772
DrdI	GACNNNNNNGTC	1 cut(s)	584
DseDI	GACNNNNNNGTC	1 cut(s)	584
EaeI	YGGCCR	2 cut(s)	42, 184
EagI	CGGCCG	1 cut(s)	184
Eam1104I	CTCTTC	2 cut(s)	205, 289
EarI	CTCTTC	2 cut(s)	205, 289
EclXI	CGGCCG	1 cut(s)	184
Eco31I	GGTCTC	3 cut(s)	480, 1006, 1012
Eco47I	GGWCC	2 cut(s)	101, 220
Eco52I	CGGCCG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	455
EcoRII	CCWGG	2 cut(s)	216, 391
FaeI	CATG	5 cut(s)	161, 412, 506, 724, 837
FalI	AAGNNNNNCTT	4 cut(s)	662, 694, 795, 827
FaqI	GGGAC	2 cut(s)	350, 535
FatI	CATG	5 cut(s)	157, 408, 502, 720, 833
Fnu4HI	GCNGC	3 cut(s)	33, 36, 340
FokI	GGATG	4 cut(s)	383, 640, 1158, 1287
Fsp4HI	GCNGC	3 cut(s)	33, 36, 340
FspBI	CTAG	8 cut(s)	65, 78, 350, 674, 984, 1035, 1071, 1088
GluI	GCNGC	3 cut(s)	33, 36, 340
HaeIII	GGCC	2 cut(s)	44, 186
HapII	CCGG	5 cut(s)	183, 368, 684, 882, 998
HgaI	GACGC	1 cut(s)	553
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	5 cut(s)	161, 412, 506, 724, 837
HindIII	AAGCTT	3 cut(s)	804, 1039, 1133
HinfI	GANTC	6 cut(s)	71, 152, 213, 303, 472, 1372
HpaII	CCGG	5 cut(s)	183, 368, 684, 882, 998
HphI	GGTGA	1 cut(s)	693
Hpy166II	GTNNAC	4 cut(s)	347, 378, 589, 1371
Hpy188III	TCNNGA	5 cut(s)	296, 476, 684, 692, 1283
Hpy8I	GTNNAC	4 cut(s)	347, 378, 589, 1371
Hpy99I	CGWCG	3 cut(s)	152, 581, 656
HpyAV	CCTTC	3 cut(s)	268, 364, 1213
HpyCH4III	ACNGT	3 cut(s)	382, 581, 705
HpyCH4IV	ACGT	2 cut(s)	466, 887
HpyCH4V	TGCA	2 cut(s)	968, 1387
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 188, 404, 409, 612, 911, 1171
HpyF3I	CTNAG	4 cut(s)	170, 935, 1176, 1258
HpySE526I	ACGT	2 cut(s)	466, 887
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	5 cut(s)	161, 412, 506, 724, 837
Kpn2I	TCCGGA	1 cut(s)	683
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
Lsp1109I	GCAGC	2 cut(s)	19, 22
LweI	GCATC	2 cut(s)	409, 1374
MabI	ACCWGGT	1 cut(s)	391
MaeI	CTAG	8 cut(s)	65, 78, 350, 674, 984, 1035, 1071, 1088
MaeII	ACGT	2 cut(s)	466, 887
MaeIII	GTNAC	5 cut(s)	80, 115, 160, 659, 853
MalI	GATC	6 cut(s)	168, 646, 688, 896, 1108, 1424
MboI	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
MfeI	CAATTG	1 cut(s)	1417
MflI	RGATCY	1 cut(s)	686
MluCI	AATT	6 cut(s)	269, 455, 633, 970, 1405, 1417
MlyI	GAGTC	3 cut(s)	161, 207, 1366
MmeI	TCCRAC	4 cut(s)	235, 605, 709, 1179
MroI	TCCGGA	1 cut(s)	683
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	5 cut(s)	183, 368, 684, 882, 998
MspR9I	CCNGG	4 cut(s)	218, 368, 393, 882
MunI	CAATTG	1 cut(s)	1417
MvaI	CCWGG	2 cut(s)	218, 393
MwoI	GCNNNNNNNGC	7 cut(s)	41, 188, 404, 409, 612, 911, 1171
NaeI	GCCGGC	1 cut(s)	184
NciI	CCSGG	2 cut(s)	368, 882
NdeII	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	5 cut(s)	161, 412, 506, 724, 837
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	3 cut(s)	80, 115, 160
NspI	RCATGY	2 cut(s)	724, 837
NspV	TTCGAA	1 cut(s)	249
PciI	ACATGT	2 cut(s)	720, 833
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	71, 303, 472
PflFI	GACNNNGTC	1 cut(s)	1072
PflMI	CCANNNNNTGG	1 cut(s)	482
PfoI	TCCNGGA	2 cut(s)	216, 366
PkrI	GCNGC	3 cut(s)	34, 37, 341
PleI	GAGTC	3 cut(s)	160, 207, 1366
PpsI	GAGTC	3 cut(s)	160, 207, 1366
Ppu21I	YACGTR	1 cut(s)	888
PscI	ACATGT	2 cut(s)	720, 833
Psp6I	CCWGG	2 cut(s)	216, 391
PspGI	CCWGG	2 cut(s)	216, 391
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	2 cut(s)	101, 220
PstNI	CAGNNNCTG	1 cut(s)	1183
PsuI	RGATCY	1 cut(s)	686
PsyI	GACNNNGTC	1 cut(s)	1072
RsaI	GTAC	2 cut(s)	719, 890
RsaNI	GTAC	2 cut(s)	718, 889
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	3 cut(s)	33, 36, 340
Sau3AI	GATC	6 cut(s)	166, 644, 686, 894, 1106, 1422
Sau96I	GGNCC	2 cut(s)	101, 220
SchI	GAGTC	3 cut(s)	161, 207, 1366
ScrFI	CCNGG	4 cut(s)	218, 368, 393, 882
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	409, 1374
SfuI	TTCGAA	1 cut(s)	249
SinI	GGWCC	2 cut(s)	101, 220
Sse9I	AATT	6 cut(s)	269, 455, 633, 970, 1405, 1417
SsiI	CCGC	4 cut(s)	99, 321, 339, 1165
SspMI	CTAG	8 cut(s)	65, 78, 350, 674, 984, 1035, 1071, 1088
StyD4I	CCNGG	4 cut(s)	216, 366, 391, 880
TaaI	ACNGT	3 cut(s)	382, 581, 705
TaiI	ACGT	2 cut(s)	469, 890
TaqI	TCGA	3 cut(s)	249, 453, 459
TaqII	GACCGA	1 cut(s)	1030
TasI	AATT	6 cut(s)	269, 455, 633, 970, 1405, 1417
TatI	WGTACW	1 cut(s)	717
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	3 cut(s)	71, 303, 472
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	4 cut(s)	169, 349, 541, 1164
TseFI	GTSAC	3 cut(s)	80, 115, 160
TseI	GCWGC	2 cut(s)	32, 35
Tsp45I	GTSAC	3 cut(s)	80, 115, 160
TspDTI	ATGAA	3 cut(s)	276, 1050, 1232
TspGWI	ACGGA	3 cut(s)	669, 1158, 1356
TspRI	CASTG	4 cut(s)	169, 349, 541, 1164
Tth111I	GACNNNGTC	1 cut(s)	1072
Van91I	CCANNNNNTGG	1 cut(s)	482
VpaK11BI	GGWCC	2 cut(s)	101, 220
XapI	RAATTY	3 cut(s)	455, 633, 970
XceI	RCATGY	2 cut(s)	724, 837
XspI	CTAG	8 cut(s)	65, 78, 350, 674, 984, 1035, 1071, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.