Rh1AG139900

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012656
Physical Location & Seq
Forward (+)
26477115 .. 26479373
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG139900.1

Sequence Viewer

Length: 876 bp
ATGCTCAACGATGCTTGTGAAGATGACTACAAGGTTATAGCAATCGAATTCGACACACGTTTGAATCCAGAGTTTGGAGACCCTAATGATAACCATGTAGGTATCAACTTGGGGACTATTATCTCCACTGAAACAATCAACGCTTCTGATGTTGGCGTCTTCCTCAACGACGGTTCAGTCCACCGAGCTTGGATAAGCTACAACGGCTCACGCCGTTGGATGGAAATTCGTTTGGGATCAGACGACGGAAGTTACCCTGCAAAGCCAGTCTTCTCCGGATCTCTTGACCTCTTACCATTTCTGAATGAGTACATGTTCGTTGGATTTTCGGCTTCCACAGGCAATCACACCCAAATCCACAGCGTGCTTTCTTGGAACTTCACTTCTGTTAGTCAAGCTTTTCTTCGTGTGCCGTCAATGGAGACATGTGAGAGCAAGATTGTTGTTACTGAAAACTCTCGTGCTAAGCCTCCCGGCACGTTCTTGATCTTTATAGCTGTGCTGGCACTTGCCATAGCTGTTATGCTTAGCCTTTACTATAATAGCAAGCGTAGAAGTGCAAATTCGGATAGTGCTAGTATAGTGTTGCCGGAGAAGAAGCAGAGACCGAGACCTCCAAACAAGCCTAGAAGCTTCACAATCTCGGAGATTTCATTGGCGACTAGGTCTTTCGGAGAGCTAGAGATACTTGGAGGTGGATCAAAAGGGGTGTGCTACCGAGGGAAGCTTCCGAACGGATGTCAAGTGGCAGTGAAGCGGTTTTCGCCTCAGTTTCTGAACTCACAAGGGTTGGATAGGAGGAGATTGATGAAGGAAATCAAGGGGATTAGCAGGTTGGCTAAATTATGCAAAGGGATATGGTGCTGCATTAATTAG

Protein Analysis

291

Amino Acids

32.21

Weight (kDa)

9.06

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 7 - 132 2.7e-32 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g33120
malus_domestica MD01G1230400.v1.1
prunus_persica Prupe.2G321100_v2.0.a1
pyrus_communis pycom01g23840
rosa_chinensis RchiOBHm_Chr1g0334661 RchiOBHm_Chr1g0383191
rosa_laevigata RLG00000026124
rosa_multiflora Rmu_sc0008563.1_g000003
rosa_roxburghii Rroxscaffold_4G00277520
rosa_rugosa Rorug01G0126300 Rorug01G0439400
rosa_samantha Rh1AG139900 Rh1AG465000 Rh1BG422400 Rh1CG131800 Rh1CG435600 Rh1DG143800 Rh1DG455100
rosa_wichuraiana Rw1G040750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 822
AccB7I CCANNNNNTGG 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 1 cut(s) 757
AclWI GGATC 3 cut(s) 244, 286, 706
AcsI RAATTY 3 cut(s) 47, 225, 562
AcyI GRCGYC 1 cut(s) 156
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 2 cut(s) 74, 220
AflIII ACRYGT 3 cut(s) 56, 312, 425
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 8 cut(s) 188, 198, 398, 497, 518, 633, 679, 727
AluI AGCT 8 cut(s) 188, 198, 398, 497, 518, 633, 679, 727
Alw26I GTCTC 4 cut(s) 72, 416, 598, 604
AlwI GGATC 3 cut(s) 244, 286, 706
AlwNI CAGNNNCTG 1 cut(s) 775
Aor13HI TCCGGA 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 864
ApoI RAATTY 3 cut(s) 47, 225, 562
AseI ATTAAT 1 cut(s) 870
AsuC2I CCSGG 1 cut(s) 474
BauI CACGAG 1 cut(s) 459
BbsI GAAGAC 2 cut(s) 151, 262
BbvI GCAGC 1 cut(s) 851
BccI CCATC 1 cut(s) 214
BceAI ACGGC 3 cut(s) 198, 220, 397
BcnI CCSGG 1 cut(s) 474
BcoDI GTCTC 4 cut(s) 72, 416, 598, 604
BfaI CTAG 4 cut(s) 576, 627, 663, 680
BfuAI ACCTGC 1 cut(s) 822
BisI GCNGC 1 cut(s) 865
BlpI GCTNAGC 2 cut(s) 465, 527
BlsI GCNGC 1 cut(s) 866
Bme1390I CCNGG 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 474
BpiI GAAGAC 2 cut(s) 151, 262
Bpu1102I GCTNAGC 2 cut(s) 465, 527
BpuMI CCSGG 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 156
BsaI GGTCTC 3 cut(s) 72, 598, 604
BsaJI CCNNGG 1 cut(s) 718
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 220
Bse1I ACTGG 1 cut(s) 266
BseAI TCCGGA 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 718
BseGI GGATG 2 cut(s) 225, 743
BseLI CCNNNNNNNGG 2 cut(s) 74, 220
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 814
BseXI GCAGC 1 cut(s) 851
BsiSI CCGG 3 cut(s) 276, 474, 590
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 2 cut(s) 74, 220
BsmAI GTCTC 4 cut(s) 72, 416, 598, 604
BsmFI GGGAC 1 cut(s) 127
Bso31I GGTCTC 3 cut(s) 72, 598, 604
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 4 cut(s) 236, 278, 486, 698
Bsp1720I GCTNAGC 2 cut(s) 465, 527
BspACI CCGC 1 cut(s) 757
BspCNI CTCAG 1 cut(s) 781
BspEI TCCGGA 1 cut(s) 275
BspMI ACCTGC 1 cut(s) 822
BspPI GGATC 3 cut(s) 244, 286, 706
BspTNI GGTCTC 3 cut(s) 72, 598, 604
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 718
BssMI GATC 4 cut(s) 236, 278, 486, 698
BssNI GRCGYC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 459
Bst2BI CACGAG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 3 cut(s) 365, 504, 548
BstDEI CTNAG 3 cut(s) 465, 527, 768
BstF5I GGATG 2 cut(s) 225, 743
BstKTI GATC 4 cut(s) 239, 281, 489, 701
BstMAI GTCTC 4 cut(s) 72, 416, 598, 604
BstMBI GATC 4 cut(s) 236, 278, 486, 698
BstMWI GCNNNNNNNGC 3 cut(s) 204, 503, 763
BstNSI RCATGY 2 cut(s) 316, 429
BstSCI CCNGG 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 851
BstV2I GAAGAC 2 cut(s) 151, 262
BstX2I RGATCY 1 cut(s) 278
BstYI RGATCY 1 cut(s) 278
BtsCI GGATG 2 cut(s) 225, 743
BtsI GCAGTG 1 cut(s) 756
BtsIMutI CAGTG 2 cut(s) 126, 756
BveI ACCTGC 1 cut(s) 822
Cac8I GCNNGC 3 cut(s) 365, 504, 548
CaiI CAGNNNCTG 1 cut(s) 775
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 310
CspCI CAANNNNNGTGG 2 cut(s) 170, 205
CviAII CATG 3 cut(s) 95, 313, 426
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 465, 527, 768
DpnI GATC 4 cut(s) 238, 280, 488, 700
DpnII GATC 4 cut(s) 236, 278, 486, 698
DraIII CACNNNGTG 1 cut(s) 364
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eco31I GGTCTC 3 cut(s) 72, 598, 604
EcoRI GAATTC 1 cut(s) 47
FaeI CATG 3 cut(s) 98, 316, 429
FalI AAGNNNNNCTT 4 cut(s) 254, 286, 387, 419
FaqI GGGAC 1 cut(s) 127
FatI CATG 3 cut(s) 94, 312, 425
Fnu4HI GCNGC 1 cut(s) 865
FokI GGATG 2 cut(s) 232, 750
Fsp4HI GCNGC 1 cut(s) 865
FspBI CTAG 4 cut(s) 576, 627, 663, 680
GluI GCNGC 1 cut(s) 865
HapII CCGG 3 cut(s) 276, 474, 590
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 3 cut(s) 98, 316, 429
HindIII AAGCTT 3 cut(s) 396, 631, 725
HinfI GANTC 1 cut(s) 64
HpaII CCGG 3 cut(s) 276, 474, 590
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 8 cut(s) 148, 241, 303, 568, 646, 674, 732, 777
Hpy188III TCNNGA 4 cut(s) 68, 276, 284, 484
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 2 cut(s) 173, 248
HpyAV CCTTC 1 cut(s) 805
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 2 cut(s) 58, 479
HpyCH4V TGCA 4 cut(s) 260, 560, 849, 867
HpyF10VI GCNNNNNNNGC 3 cut(s) 204, 503, 763
HpyF3I CTNAG 3 cut(s) 465, 527, 768
HpySE526I ACGT 2 cut(s) 58, 479
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 3 cut(s) 98, 316, 429
Kpn2I TCCGGA 1 cut(s) 275
Kzo9I GATC 4 cut(s) 236, 278, 486, 698
LpnPI CCDG 9 cut(s) 81, 270, 279, 289, 324, 487, 488, 603, 817
Lsp1109I GCAGC 1 cut(s) 851
MaeI CTAG 4 cut(s) 576, 627, 663, 680
MaeII ACGT 2 cut(s) 58, 479
MaeIII GTNAC 2 cut(s) 251, 445
MalI GATC 4 cut(s) 238, 280, 488, 700
MboI GATC 4 cut(s) 236, 278, 486, 698
MboII GAAGA 5 cut(s) 32, 151, 262, 395, 607
MflI RGATCY 1 cut(s) 278
MluCI AATT 5 cut(s) 47, 225, 562, 842, 871
MmeI TCCRAC 3 cut(s) 197, 301, 771
MnlI CCTC 8 cut(s) 173, 299, 480, 624, 686, 713, 777, 792
MroI TCCGGA 1 cut(s) 275
MseI TTAA 1 cut(s) 870
MspI CCGG 3 cut(s) 276, 474, 590
MspR9I CCNGG 1 cut(s) 474
MwoI GCNNNNNNNGC 3 cut(s) 204, 503, 763
NciI CCSGG 1 cut(s) 474
NdeII GATC 4 cut(s) 236, 278, 486, 698
NlaIII CATG 3 cut(s) 98, 316, 429
NspI RCATGY 2 cut(s) 316, 429
PciI ACATGT 2 cut(s) 312, 425
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 664
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 1 cut(s) 866
PscI ACATGT 2 cut(s) 312, 425
PshBI ATTAAT 1 cut(s) 870
PstNI CAGNNNCTG 1 cut(s) 775
PsuI RGATCY 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 664
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 870
SatI GCNGC 1 cut(s) 865
Sau3AI GATC 4 cut(s) 236, 278, 486, 698
ScrFI CCNGG 1 cut(s) 474
Sse9I AATT 5 cut(s) 47, 225, 562, 842, 871
SsiI CCGC 1 cut(s) 757
SspMI CTAG 4 cut(s) 576, 627, 663, 680
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 2 cut(s) 61, 482
TaqI TCGA 2 cut(s) 45, 51
TaqII GACCGA 1 cut(s) 622
TasI AATT 5 cut(s) 47, 225, 562, 842, 871
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 870
Tru9I TTAA 1 cut(s) 870
TscAI CASTG 2 cut(s) 133, 756
TseI GCWGC 1 cut(s) 864
TspDTI ATGAA 2 cut(s) 642, 824
TspGWI ACGGA 2 cut(s) 261, 750
TspRI CASTG 2 cut(s) 133, 756
Tth111I GACNNNGTC 1 cut(s) 664
Van91I CCANNNNNTGG 1 cut(s) 74
VspI ATTAAT 1 cut(s) 870
XapI RAATTY 3 cut(s) 47, 225, 562
XceI RCATGY 2 cut(s) 316, 429
XspI CTAG 4 cut(s) 576, 627, 663, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.