Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012656

Physical Location & Seq

Genomic Coordinates Forward (+)

28979738 .. 28981075

Gene Structure 1338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG131800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCTCAACGATGCTTGTGAAGATGACTACAAGGTTATAGCAATCGAATTCGACACACGTTTGAATCCAGAGTTTGGAGACCCTAATGATAACCATGTAGGTATCAACTTGGGGACTATTATCTCCACTGAAACAATCAACGCTTCTGATGTTGGCGTCTTCCTCAACGACGGTTCAGTCCACCGAGCTTGGATAAGCTACAACGGCTCACGCCGTTGGATGGAAATTCGTTTGGGATCAGACGACGGAAGTTACCCTGCAAAGCCAGTCTTCTCCGGATCTCTTGACCTCTTACCATTTCTGAATGAGTACATGTTCGTTGGATTTTCGGCTTCCACAGGCAATCACACCCAAATCCACAGCGTGCTTTCTTGGAACTTCACTTCTGTTAGTCAAGCTTTTCTTCGTGTGCCGTCAATGGAGACATGTGAGAGCAAGATTGTTGTTACTGAAAACTCTCGTGCTAAGCCTCCCGGCACGTTCTTGATCTTTATAGCTGTGCTGGCACTTGCCATAGCTGTTATGCTTAGCCTTTACTATAATAGCAAGCGTAGAAGTGCAAATTCGGATAGTGCTAGTATAGTGTTGCCGGAGAAGAAGCAGAGACCGAGACCTCCAAACAAGCCTAGAAGCTTCACAATCTCGGAGATTTCATTGGCGACTAGGTCTTTCGGAGAGCTAGAGATACTTGGAGGTGGATCAAAAGGGGTGTGCTACCGAGGGAAGCTTCCGAACGGATGTCAAGTGGCAGTGAAGCGGTTTTCGCCTCAGTTTCTGAACTCACAAGGGTTGGATAGGAGGAGATTGATGAAGGAAATCAAGGGGATTAGCAGGGATCGCGGTGGCTGGAGGTTGCAGCACTTGGTCTGGAGGGTTGGGATCGAGGGGGAAGGCCGCCGGATCGAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002229 GO:0002239 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0016020 GO:0043207 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Lectin_legB Pkinase_Tyr

Protein Analysis

303

Amino Acids

33.75

Weight (kDa)

9.17

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lectin_legB	PF00139	7 - 132	3e-32	Legume lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g33120
malus_domestica	MD01G1230400.v1.1
prunus_persica	Prupe.2G321100_v2.0.a1
pyrus_communis	pycom01g23840
rosa_chinensis	RchiOBHm_Chr1g0334661 RchiOBHm_Chr1g0383191
rosa_laevigata	RLG00000026124
rosa_multiflora	Rmu_sc0008563.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277520
rosa_rugosa	Rorug01G0126300 Rorug01G0439400
rosa_samantha	Rh1AG139900 Rh1AG465000 Rh1BG422400 Rh1CG131800 Rh1CG435600 Rh1DG143800 Rh1DG455100
rosa_wichuraiana	Rw1G040750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccII	CGCG	1 cut(s)	840
AccIII	TCCGGA	1 cut(s)	275
AciI	CCGC	3 cut(s)	757, 840, 895
AclWI	GGATC	6 cut(s)	244, 286, 706, 843, 887, 908
AcsI	RAATTY	3 cut(s)	47, 225, 562
AcyI	GRCGYC	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	74, 220
AflIII	ACRYGT	3 cut(s)	56, 312, 425
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	8 cut(s)	188, 198, 398, 497, 518, 633, 679, 727
AluI	AGCT	8 cut(s)	188, 198, 398, 497, 518, 633, 679, 727
Alw26I	GTCTC	4 cut(s)	72, 416, 598, 604
AlwI	GGATC	6 cut(s)	244, 286, 706, 843, 887, 908
AlwNI	CAGNNNCTG	1 cut(s)	775
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	1 cut(s)	892
ApeKI	GCWGC	1 cut(s)	856
ApoI	RAATTY	3 cut(s)	47, 225, 562
AsuC2I	CCSGG	1 cut(s)	474
BauI	CACGAG	1 cut(s)	459
BbsI	GAAGAC	2 cut(s)	151, 262
BbvI	GCAGC	1 cut(s)	868
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	3 cut(s)	198, 220, 397
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	4 cut(s)	72, 416, 598, 604
BfaI	CTAG	4 cut(s)	576, 627, 663, 680
BisI	GCNGC	2 cut(s)	857, 895
BlpI	GCTNAGC	2 cut(s)	465, 527
BlsI	GCNGC	2 cut(s)	858, 896
Bme1390I	CCNGG	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	474
BpiI	GAAGAC	2 cut(s)	151, 262
BpmI	CTGGAG	2 cut(s)	868, 889
Bpu1102I	GCTNAGC	2 cut(s)	465, 527
BpuMI	CCSGG	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	156
BsaI	GGTCTC	3 cut(s)	72, 598, 604
BsaJI	CCNNGG	1 cut(s)	718
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 220
Bse1I	ACTGG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	2 cut(s)	225, 743
BseLI	CCNNNNNNNGG	2 cut(s)	74, 220
BseMII	CTCAG	1 cut(s)	782
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	1 cut(s)	814
BseXI	GCAGC	1 cut(s)	868
Bsh1236I	CGCG	1 cut(s)	840
BshFI	GGCC	1 cut(s)	894
BsiSI	CCGG	4 cut(s)	276, 474, 590, 898
BslFI	GGGAC	1 cut(s)	127
BslI	CCNNNNNNNGG	2 cut(s)	74, 220
BsmAI	GTCTC	4 cut(s)	72, 416, 598, 604
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	894
Bso31I	GGTCTC	3 cut(s)	72, 598, 604
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
Bsp1720I	GCTNAGC	2 cut(s)	465, 527
BspACI	CCGC	3 cut(s)	757, 840, 895
BspANI	GGCC	1 cut(s)	894
BspCNI	CTCAG	1 cut(s)	781
BspEI	TCCGGA	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	840
BspPI	GGATC	6 cut(s)	244, 286, 706, 843, 887, 908
BspTNI	GGTCTC	3 cut(s)	72, 598, 604
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
BssNI	GRCGYC	1 cut(s)	156
BssSI	CACGAG	1 cut(s)	459
Bst2BI	CACGAG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	365, 504, 548
BstDEI	CTNAG	3 cut(s)	465, 527, 768
BstF5I	GGATG	2 cut(s)	225, 743
BstFNI	CGCG	1 cut(s)	840
BstKTI	GATC	7 cut(s)	239, 281, 489, 701, 838, 882, 903
BstMAI	GTCTC	4 cut(s)	72, 416, 598, 604
BstMBI	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 503, 763, 837
BstNSI	RCATGY	2 cut(s)	316, 429
BstSCI	CCNGG	1 cut(s)	472
BstUI	CGCG	1 cut(s)	840
BstV1I	GCAGC	1 cut(s)	868
BstV2I	GAAGAC	2 cut(s)	151, 262
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	894
BtsCI	GGATG	2 cut(s)	225, 743
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	2 cut(s)	126, 756
Cac8I	GCNNGC	3 cut(s)	365, 504, 548
CaiI	CAGNNNCTG	1 cut(s)	775
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	310
CspCI	CAANNNNNGTGG	2 cut(s)	170, 205
CviAII	CATG	3 cut(s)	95, 313, 426
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	3 cut(s)	465, 527, 768
DpnI	GATC	7 cut(s)	238, 280, 488, 700, 837, 881, 902
DpnII	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
DraIII	CACNNNGTG	1 cut(s)	364
DrdI	GACNNNNNNGTC	1 cut(s)	176
DseDI	GACNNNNNNGTC	1 cut(s)	176
Eco31I	GGTCTC	3 cut(s)	72, 598, 604
EcoRI	GAATTC	1 cut(s)	47
FaeI	CATG	3 cut(s)	98, 316, 429
FaiI	YATR	9 cut(s)	38, 96, 314, 427, 494, 515, 524, 540, 581
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 387, 419
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	3 cut(s)	94, 312, 425
Fnu4HI	GCNGC	2 cut(s)	857, 895
FokI	GGATG	2 cut(s)	232, 750
Fsp4HI	GCNGC	2 cut(s)	857, 895
FspBI	CTAG	4 cut(s)	576, 627, 663, 680
GluI	GCNGC	2 cut(s)	857, 895
GsuI	CTGGAG	2 cut(s)	868, 889
HaeIII	GGCC	1 cut(s)	894
HapII	CCGG	4 cut(s)	276, 474, 590, 898
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	98, 316, 429
HindIII	AAGCTT	3 cut(s)	396, 631, 725
HinfI	GANTC	1 cut(s)	64
HpaII	CCGG	4 cut(s)	276, 474, 590, 898
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	8 cut(s)	148, 241, 303, 568, 646, 674, 732, 777
Hpy188III	TCNNGA	6 cut(s)	68, 276, 284, 484, 868, 904
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	2 cut(s)	173, 248
HpyAV	CCTTC	2 cut(s)	805, 884
HpyCH4III	ACNGT	1 cut(s)	173
HpyCH4IV	ACGT	2 cut(s)	58, 479
HpyCH4V	TGCA	3 cut(s)	260, 560, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 503, 763, 837
HpyF3I	CTNAG	3 cut(s)	465, 527, 768
HpySE526I	ACGT	2 cut(s)	58, 479
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	98, 316, 429
Kpn2I	TCCGGA	1 cut(s)	275
Kzo9I	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
Lsp1109I	GCAGC	1 cut(s)	868
MaeI	CTAG	4 cut(s)	576, 627, 663, 680
MaeII	ACGT	2 cut(s)	58, 479
MaeIII	GTNAC	2 cut(s)	251, 445
MalI	GATC	7 cut(s)	238, 280, 488, 700, 837, 881, 902
MboI	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
MboII	GAAGA	5 cut(s)	32, 151, 262, 395, 607
MflI	RGATCY	1 cut(s)	278
MluCI	AATT	3 cut(s)	47, 225, 562
MmeI	TCCRAC	3 cut(s)	197, 301, 771
MroI	TCCGGA	1 cut(s)	275
MspI	CCGG	4 cut(s)	276, 474, 590, 898
MspR9I	CCNGG	1 cut(s)	474
MvnI	CGCG	1 cut(s)	840
MwoI	GCNNNNNNNGC	4 cut(s)	204, 503, 763, 837
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
NlaIII	CATG	3 cut(s)	98, 316, 429
NspI	RCATGY	2 cut(s)	316, 429
PciI	ACATGT	2 cut(s)	312, 425
PfeI	GAWTC	1 cut(s)	64
PflFI	GACNNNGTC	1 cut(s)	664
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	858, 896
PscI	ACATGT	2 cut(s)	312, 425
PstNI	CAGNNNCTG	1 cut(s)	775
PsuI	RGATCY	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	664
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SatI	GCNGC	2 cut(s)	857, 895
Sau3AI	GATC	7 cut(s)	236, 278, 486, 698, 835, 879, 900
ScrFI	CCNGG	1 cut(s)	474
Sse9I	AATT	3 cut(s)	47, 225, 562
SsiI	CCGC	3 cut(s)	757, 840, 895
SspMI	CTAG	4 cut(s)	576, 627, 663, 680
StyD4I	CCNGG	1 cut(s)	472
TaaI	ACNGT	1 cut(s)	173
TaiI	ACGT	2 cut(s)	61, 482
TaqI	TCGA	4 cut(s)	45, 51, 882, 903
TaqII	GACCGA	1 cut(s)	622
TasI	AATT	3 cut(s)	47, 225, 562
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	897
TfiI	GAWTC	1 cut(s)	64
TscAI	CASTG	2 cut(s)	133, 756
TseI	GCWGC	1 cut(s)	856
TspDTI	ATGAA	2 cut(s)	642, 824
TspGWI	ACGGA	2 cut(s)	261, 750
TspRI	CASTG	2 cut(s)	133, 756
Tth111I	GACNNNGTC	1 cut(s)	664
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	3 cut(s)	47, 225, 562
XceI	RCATGY	2 cut(s)	316, 429
XspI	CTAG	4 cut(s)	576, 627, 663, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.