Rorug01G0199800

Nucleotidyltransferase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003190
Physical Location & Seq
Forward (+)
27918264 .. 27919513
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0199800.1

Sequence Viewer

Length: 1155 bp
ATGGGGTTATCATCTCTATGCTTAATAACTGTGTCCATCTATATCCTTTCAACAATTGTGTTGTTCCATCTTGTGGTGGCCAACTCTTTGCAGTCATATAATACTCCTACTTGCCATGATGACGAGATCTATGCCTTGCTGCAATTCAAGCAAAGTTTTGTCATTAGAAAGTCTGCTTCAGGGGACAAGGGTGCTTATCCAAAGATTTCTTCGTGGAAATCAAACAGCAGTTGTTGCTCATGGGATGGTGTAGAGTGTGATGAGAAGACGGGTCACGTGATTGGGCTTGATCTTAGTAGCAGTTGTCTCTATGGGTCTTTCAGCTCCAACAACACCTTATTCAGTCTTGTTCATCTTCAGCATCTGAACCTCGCTGATAATCACTTCATAGGATCTCAAATTCCTACTAGCATTGGGAAGTTCCCAAGGCTCAGCCTAGCTCAAAATTTAACTGGCCTACAAACACTTGATCTTTCTTCCATTAATATATCATCCACAATACCCGACACCCTGACAAATTTGTCTCGTTTGACATCCCTCACCCTTGCTGATTGCGGCCTCTTTGGCAAATTATCAGGAAGAATCTTTAAATTAAAGAATTTGAAGGTTCTTGATGTGAGCAACAACCCTGCTCTCACGGGGTATTTTCCTGATGACTATAGTGGAAGTAGCCCTAATCTCATGTCACTCAAACTCTCAGCCACTAATTTTTTCATAAACCTGCCTTCTTTGATAGAAAGGTTTCATTCATTGAAAGAATTAGCTGTGAGTTCATGCAATATTTCGGAAGGCCCAGTACCATTTTCACTTGGTAATCTTAGGGATCTCATCTATTTGGACCTTTCACATAATAAGTTTAATGGTCAAGTACCATTTTCACTTGGTAATCTTAGGGATCTCATCTATTTAGACCTTTCATATAATAAGTTTAATGGTCAAGTACCATTTTCACTTGGTAATCTTAGGGATCTCATCTATTTGGACCTTTCATATAATAAGTTTAATGGTCAAATCCCTACAATGTTGGGAAACCCTACCCAACTTACATATCTATCGCTTTCTCATAATTATTTTCATGGTTCGAATTTTGGAGCAGAGACTACCGGGATATGCATCGTGCCGCCGAGACGAGTCGACCAGACCGATCCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NTP_transf_2 PAP_assoc

Protein Analysis

384

Amino Acids

42.17

Weight (kDa)

6.54

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 39 - 87 1e-10 Leucine rich repeat N-terminal domain
LRR_14 PF23598 96 - 206 7e-08 Leucine-rich repeat region
LRR_Zer-1 PF25013 146 - 237 4e-08 Zer-1-like, Leucine-rich repeats
LRR_14 PF23598 240 - 355 7.6e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 729
AccB7I CCANNNNNTGG 1 cut(s) 73
AccI GTMKAC 1 cut(s) 1134
AciI CCGC 2 cut(s) 555, 1121
AclWI GGATC 5 cut(s) 400, 831, 903, 975, 1139
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 5 cut(s) 399, 445, 517, 598, 1084
AcuI CTGAAG 2 cut(s) 162, 341
AcvI CACGTG 1 cut(s) 277
AfaI GTAC 3 cut(s) 798, 870, 942
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 4 cut(s) 51, 148, 604, 754
AjuI GAANNNNNNNTTGG 2 cut(s) 193, 225
AluBI AGCT 3 cut(s) 324, 440, 764
AluI AGCT 3 cut(s) 324, 440, 764
Alw26I GTCTC 4 cut(s) 311, 528, 1091, 1120
AlwI GGATC 5 cut(s) 400, 831, 903, 975, 1139
AlwNI CAGNNNCTG 1 cut(s) 364
AoxI GGCC 4 cut(s) 78, 454, 556, 790
ApeKI GCWGC 1 cut(s) 139
ApoI RAATTY 5 cut(s) 399, 445, 517, 598, 1084
AseI ATTAAT 1 cut(s) 483
Asp700I GAANNNNTTC 1 cut(s) 741
AspS9I GGNCC 3 cut(s) 791, 838, 982
AsuC2I CCSGG 1 cut(s) 1105
AsuHPI GGTGA 1 cut(s) 532
AsuII TTCGAA 1 cut(s) 1082
AvaII GGWCC 2 cut(s) 838, 982
BalI TGGCCA 1 cut(s) 80
BarI GAAGNNNNNNTAC 2 cut(s) 780, 812
BbrPI CACGTG 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 126
BccI CCATC 3 cut(s) 44, 75, 239
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BcnI CCSGG 1 cut(s) 1105
BcoDI GTCTC 4 cut(s) 311, 528, 1091, 1120
BfaI CTAG 2 cut(s) 408, 437
BfmI CTRYAG 1 cut(s) 658
BfuAI ACCTGC 1 cut(s) 729
BglI GCCNNNNNGGC 1 cut(s) 564
BglII AGATCT 1 cut(s) 126
BisI GCNGC 3 cut(s) 140, 556, 1121
BlpI GCTNAGC 1 cut(s) 431
BlsI GCNGC 3 cut(s) 141, 557, 1122
Bme1390I CCNGG 1 cut(s) 1105
Bme18I GGWCC 2 cut(s) 838, 982
BmgT120I GGNCC 3 cut(s) 791, 838, 982
BmrFI CCNGG 1 cut(s) 1105
BmrI ACTGGG 1 cut(s) 788
BmsI GCATC 2 cut(s) 370, 1122
BmuI ACTGGG 1 cut(s) 788
BpiI GAAGAC 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 431
Bpu14I TTCGAA 1 cut(s) 1082
BpuMI CCSGG 1 cut(s) 1105
BsaAI YACGTR 1 cut(s) 277
BsaBI GATNNNNATC 1 cut(s) 1112
BsaJI CCNNGG 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 457, 794
Bse8I GATNNNNATC 1 cut(s) 1112
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 3 cut(s) 250, 491, 533
BseJI GATNNNNATC 1 cut(s) 1112
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 2 cut(s) 445, 711
BseNI ACTGG 2 cut(s) 457, 794
BseXI GCAGC 1 cut(s) 126
BshFI GGCC 4 cut(s) 80, 456, 558, 792
BsiSI CCGG 2 cut(s) 1104, 1148
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 4 cut(s) 311, 528, 1091, 1120
BsmBI CGTCTC 1 cut(s) 1120
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 4 cut(s) 80, 456, 558, 792
Bsp119I TTCGAA 1 cut(s) 1082
Bsp143I GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
Bsp1720I GCTNAGC 1 cut(s) 431
BspACI CCGC 2 cut(s) 555, 1121
BspANI GGCC 4 cut(s) 80, 456, 558, 792
BspCNI CTCAG 2 cut(s) 444, 710
BspMI ACCTGC 1 cut(s) 729
BspPI GGATC 5 cut(s) 400, 831, 903, 975, 1139
BspT104I TTCGAA 1 cut(s) 1082
BsrI ACTGG 2 cut(s) 457, 794
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
BssT1I CCWWGG 1 cut(s) 425
Bst4CI ACNGT 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 234
BstBAI YACGTR 1 cut(s) 277
BstBI TTCGAA 1 cut(s) 1082
BstDEI CTNAG 6 cut(s) 293, 431, 697, 818, 890, 962
BstF5I GGATG 3 cut(s) 250, 491, 533
BstKTI GATC 8 cut(s) 129, 292, 395, 472, 826, 898, 970, 1147
BstMAI GTCTC 4 cut(s) 311, 528, 1091, 1120
BstMBI GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
BstMWI GCNNNNNNNGC 3 cut(s) 148, 234, 564
BstSCI CCNGG 1 cut(s) 1103
BstSFI CTRYAG 1 cut(s) 658
BstV1I GCAGC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 272
BstX2I RGATCY 5 cut(s) 126, 392, 823, 895, 967
BstYI RGATCY 5 cut(s) 126, 392, 823, 895, 967
BsuRI GGCC 4 cut(s) 80, 456, 558, 792
BtsCI GGATG 3 cut(s) 250, 491, 533
BveI ACCTGC 1 cut(s) 729
CaiI CAGNNNCTG 1 cut(s) 364
Cfr13I GGNCC 3 cut(s) 791, 838, 982
Csp6I GTAC 3 cut(s) 797, 869, 941
CviAII CATG 5 cut(s) 116, 240, 682, 774, 1076
CviQI GTAC 3 cut(s) 797, 869, 941
DdeI CTNAG 6 cut(s) 293, 431, 697, 818, 890, 962
DpnI GATC 8 cut(s) 128, 291, 394, 471, 825, 897, 969, 1146
DpnII GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
DraI TTTAAA 1 cut(s) 589
DrdI GACNNNNNNGTC 1 cut(s) 520
DseDI GACNNNNNNGTC 1 cut(s) 520
EaeI YGGCCR 1 cut(s) 78
Eco130I CCWWGG 1 cut(s) 425
Eco47I GGWCC 2 cut(s) 838, 982
Eco57I CTGAAG 2 cut(s) 162, 341
Eco72I CACGTG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 425
EcoT22I ATGCAT 1 cut(s) 1115
ErhI CCWWGG 1 cut(s) 425
Esp3I CGTCTC 1 cut(s) 1120
FaeI CATG 5 cut(s) 119, 243, 685, 777, 1079
FaqI GGGAC 1 cut(s) 197
FatI CATG 5 cut(s) 115, 239, 681, 773, 1075
FblI GTMKAC 1 cut(s) 1134
Fnu4HI GCNGC 3 cut(s) 140, 556, 1121
FokI GGATG 3 cut(s) 257, 478, 520
Fsp4HI GCNGC 3 cut(s) 140, 556, 1121
FspBI CTAG 2 cut(s) 408, 437
GluI GCNGC 3 cut(s) 140, 556, 1121
HaeIII GGCC 4 cut(s) 80, 456, 558, 792
HapII CCGG 2 cut(s) 1104, 1148
Hin1II CATG 5 cut(s) 119, 243, 685, 777, 1079
HincII GTYRAC 1 cut(s) 1135
HindII GTYRAC 1 cut(s) 1135
HinfI GANTC 2 cut(s) 582, 1131
HpaII CCGG 2 cut(s) 1104, 1148
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 1135
Hpy188I TCNGA 2 cut(s) 366, 787
Hpy188III TCNNGA 3 cut(s) 576, 611, 650
Hpy8I GTNNAC 1 cut(s) 1135
HpyAV CCTTC 3 cut(s) 598, 735, 782
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 4 cut(s) 91, 142, 777, 1113
HpyF10VI GCNNNNNNNGC 3 cut(s) 148, 234, 564
HpyF3I CTNAG 6 cut(s) 293, 431, 697, 818, 890, 962
HpySE526I ACGT 1 cut(s) 276
Hsp92II CATG 5 cut(s) 119, 243, 685, 777, 1079
Kzo9I GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
LmnI GCTCC 2 cut(s) 329, 1091
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 370, 1122
MaeI CTAG 2 cut(s) 408, 437
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 272, 684
MalI GATC 8 cut(s) 128, 291, 394, 471, 825, 897, 969, 1146
MboI GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
MboII GAAGA 5 cut(s) 201, 277, 347, 468, 591
MfeI CAATTG 1 cut(s) 54
MflI RGATCY 5 cut(s) 126, 392, 823, 895, 967
MlsI TGGCCA 1 cut(s) 80
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 1 cut(s) 1140
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 3 cut(s) 380, 548, 569
Mox20I TGGCCA 1 cut(s) 80
Mph1103I ATGCAT 1 cut(s) 1115
MroXI GAANNNNTTC 1 cut(s) 741
MscI TGGCCA 1 cut(s) 80
MseI TTAA 8 cut(s) 23, 449, 483, 588, 593, 858, 930, 1002
MslI CAYNNNNRTG 1 cut(s) 16
Msp20I TGGCCA 1 cut(s) 80
MspI CCGG 2 cut(s) 1104, 1148
MspR9I CCNGG 1 cut(s) 1105
MunI CAATTG 1 cut(s) 54
MwoI GCNNNNNNNGC 3 cut(s) 148, 234, 564
NciI CCSGG 1 cut(s) 1105
NdeII GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
NlaIII CATG 5 cut(s) 119, 243, 685, 777, 1079
NmeAIII GCCGAG 1 cut(s) 1149
NmuCI GTSAC 2 cut(s) 272, 684
NsiI ATGCAT 1 cut(s) 1115
NspV TTCGAA 1 cut(s) 1082
PcsI WCGNNNNNNNCGW 1 cut(s) 1140
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 1 cut(s) 582
PflMI CCANNNNNTGG 1 cut(s) 73
PkrI GCNGC 3 cut(s) 141, 557, 1122
PleI GAGTC 1 cut(s) 1139
PmaCI CACGTG 1 cut(s) 277
PmlI CACGTG 1 cut(s) 277
PpsI GAGTC 1 cut(s) 1139
Ppu21I YACGTR 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 483
PspCI CACGTG 1 cut(s) 277
PspPI GGNCC 3 cut(s) 791, 838, 982
PstNI CAGNNNCTG 1 cut(s) 364
PsuI RGATCY 5 cut(s) 126, 392, 823, 895, 967
RsaI GTAC 3 cut(s) 798, 870, 942
RsaNI GTAC 3 cut(s) 797, 869, 941
RseI CAYNNNNRTG 1 cut(s) 16
SalI GTCGAC 1 cut(s) 1133
SaqAI TTAA 8 cut(s) 23, 449, 483, 588, 593, 858, 930, 1002
SatI GCNGC 3 cut(s) 140, 556, 1121
Sau3AI GATC 8 cut(s) 126, 289, 392, 469, 823, 895, 967, 1144
Sau96I GGNCC 3 cut(s) 791, 838, 982
SchI GAGTC 1 cut(s) 1140
ScrFI CCNGG 1 cut(s) 1105
SfaNI GCATC 2 cut(s) 370, 1122
SfcI CTRYAG 1 cut(s) 658
SfuI TTCGAA 1 cut(s) 1082
SinI GGWCC 2 cut(s) 838, 982
SmiMI CAYNNNNRTG 1 cut(s) 16
SsiI CCGC 2 cut(s) 555, 1121
SspI AATATT 1 cut(s) 781
SspMI CTAG 2 cut(s) 408, 437
StyD4I CCNGG 1 cut(s) 1103
StyI CCWWGG 1 cut(s) 425
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 1082, 1134
TauI GCSGC 2 cut(s) 558, 1123
TfiI GAWTC 1 cut(s) 582
Tru1I TTAA 8 cut(s) 23, 449, 483, 588, 593, 858, 930, 1002
Tru9I TTAA 8 cut(s) 23, 449, 483, 588, 593, 858, 930, 1002
TseFI GTSAC 2 cut(s) 272, 684
TseI GCWGC 1 cut(s) 139
Tsp45I GTSAC 2 cut(s) 272, 684
TspDTI ATGAA 9 cut(s) 341, 376, 703, 734, 738, 762, 906, 978, 1064
Van91I CCANNNNNTGG 1 cut(s) 73
VpaK11BI GGWCC 2 cut(s) 838, 982
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 5 cut(s) 399, 445, 517, 598, 1084
XmiI GTMKAC 1 cut(s) 1134
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 2 cut(s) 408, 437
Zsp2I ATGCAT 1 cut(s) 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.