Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003190

Physical Location & Seq

Genomic Coordinates Reverse (-)

43809520 .. 43819451

Gene Structure 9932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG201800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGGAGAAATTTGATAGATCATTCATGGAAGCTTCTTCTTCTTCTTCAGTCATTCTTGAAGATGACGCAGCAAAGTCTGATCAGGTTTCTGGTGATACAGCCTACCAGAACATCGGATGTGATAATTCAGCTAGTTGTAACATCCCTTTGTCAAATTCAATTCCTTCTGGTTCTGCGAATGGACCTCTTAAAGATGAAGATGCCACCAGAAGCTTTCAAGAGAATGATGGTATTGGTTCTAGTGCCAGTTTCTGTCATAAGGTTCTGGAAAGTTACCAGTGTTTAAATAATAATACTGAAATCCAAACAAAATGTTCTGGATCAGAAACTGAAGCCTGTAAGGTAGATGGAAACTTGATAAAGTCTCCAGTGCCTGAGGTAGATGATAAAGTTTCCCATCATAAAGATATTGACTTGCAGGACAAGCGTGCTGTTAAGTCAGGTGCGAAAGAAGTTTTGCCAGCCAAAGAAATAAGAGCTTCTGATGTAAACGAGGAAGCTGTTCTGTTGCAGGACCAAGAGAGTGGAAATAATATATATCACACTAGGGCTCCAAGTTCTTTTGATTGCCCTCCTTATGAGTGGCCGGCTGTAGCTTGTGCCTATTTTCCACCTGTTAACTCACATCTCCCACCTGCCACCGATCGATTGCATCTGGATGTTGGTCATAACTGGCAGAATCACCGCCAGTCTTTTCTACCCACAATACATCAGGTGAGAAACTCGGCAATTGAAGGTGGGTGTAATCCAGTTCTGACTCGACCATTGCCAATGAGTATAGATTGGCCCCCAATGGTTCGAAGTGCTCGTAGAGTGGCTCCATACCGGACCTGTAATTATGATTCTGGGTTTGTCTCAAAAAAGCCGTGTACTTATCCACAGGGTTTTGCACACACTGTCCAAATAAATGCAACAACCATGGATGATGAAAGGAAGTATTCTTGGGATTGCGCAGACCTACCTGATCCAACAAAGGCATATGAACTAGTGGATGAATGTGACAGTCAATGGATATCTGAGGATGAAGTTGAGGTGCAAGCATTTTCTGGGGCAGATTATAATCAATACTTTGGTGGTGGTGTGATGTACTGGAATCCTTCTGATCATACCGGGACAGTTTTCTCTCGCCCTCCTTCCCTTAGTTCTGATGATAGCTCATGGGCTTGGCGTGAAGCTGACATAAATAGAGCTGTTGATGATATGGTTGCATTTTCTTCTCCGTACAGTACAAATGGTTTGACTTCACCTACTGCTTCCTTCTGTTCTCCTTTTGATCCTTTGGGATCAGGAAACCAGCCTCTTGGATATGTTATGTCAGGAAATGAAGTACCAGGCAAGGTGCTGCATCCCTCATCAACAATGGGAGACACAGTAGTAGATGAGGAATCGTCTGGATCTTTGGCTGACGTAACTGGTGATATTGAAGGGAAGACAGGCGATTCATTGCCTTACCCCATGTTGCGGCCAATCATCATATCAAGATCAAGAGACTTTAAGCGCAGCCATGATCGTAAAAGCCCATGTGTTCCTCCTACTATGCGCGATCGACCTAGGATAAAGCGGCCACCGTCGCCGGTGGTGCTTTCTGTCCCACGCGCTCCACGACCACCTCCACCATCTTCTGTGAGTGACTCGAGGAAACACAGGGGATTTCCAACTGTTCGTTCTGGTAGCTCTAGCCCAAGGCACTGGGGTATGAGAGGTTGGTTCCATGATGGAGCTAACTTGGAGGAAGCTTGTTTACGCATGGATGGTGCTGAAGTTGTTTGGCCATTTAGAAATAATATTTCAGGCCCCCCATTGATTCAGCCTCTTCCTGCACCTCTGTTGCAGGATCGACTGATTGCTATTTCTCAACTAGCACGTGATCAGGAACATCCGGATGTTGCATTTCCCCTTCAGCCGCCTGAGTTACATAACTGTCCAACACGGAAGGCAAATCTCTCGCTGATGCACAGCCTTGTGCATGATGAGATTGAATTTTTTTGCAAGAAGGTTGCTACAGAGAATATGTCTCGGAAGCCCTACATCAATTGGGCTGTCAAACGAGTTACACGGTCTCTCCAGGTGCTTTGGCCCAGATCCAGGACAAATATATTTGGTTCAGTTGCAAACGGTTTGTCCCTTCCAACTAGTGATGTGGACCTTGTGGTTTCTCTACCTCCTGTTAGGAATTTGGAACCCATTAAAGAAGCTGGGATATTGGAGGGTCGAAATGGTATTAAAGAGACATGCCTTCAGCATGCTGCCAGGTATCTCGTCAATCAGGATTGGGTTAAAAATGATTCTCTTAAGACCGTGGAAAATACAGCTATACCGATTATAATGCTTGTGGTGGAAGTTCCCAATGATCTAATTGCCTCGTCTTCGTCTAACGTGCAATCACCAAAAGAAGAGGCACCACACAGTACTGGTGAACCAGACTGTAATGTGCACTCCAGTGGGGTTATTTTAGAAGAATCTGCTATGCCTAAGTGCCCCCAGATAACTTGTGATGCTACAAAGGATTCAGTATCAATTCGCATTGACATCAGTTTCAAATCTCCATCTCATACAGGATTTCAAACTACACAGCTGGTTAAAGATTTAACTGAGCAGTTTCCAGCTGCTACACCCCTTGCTTTGGTACTGAAACAGTTCTTGGCGGATCGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGAGTTCCTACTGCTTGGTGAGTAATGCTGGAACACCTCTCATCGGGCTTAATTCAACCTGTGCATTTCGTGTTGTGTTTGGGGAAGCTGCTCATTCTGTGTTGTGTTTAGGGAAGCTGCTTATTAGGTTGAAAACTGCCTTCCCTAATTTGGGCACAAAGCATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

949

Amino Acids

104.08

Weight (kDa)

5.58

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	680 - 776	9.8e-08	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
NTP_transf_2	PF01909	682 - 725	9e-06	Nucleotidyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00060 AT4G00060 AT4G00060 AT4G00060
fragaria_vesca	FvH4_7g11041 FvH4_7g11041 FvH4_7g11041 FvH4_7g11041
malus_domestica	MD07G1115100.v1.1
prunus_persica	Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1
pyrus_communis	pycom07g10010
rosa_chinensis	RchiOBHm_Chr1g0349071
rosa_laevigata	RLG00000028609
rosa_multiflora	Rmu_sc0009855.1_g000003
rosa_roxburghii	Rroxscaffold_4G00306210
rosa_rugosa	Rorug01G0199800
rosa_samantha	Rh1AG217400 Rh1BG182800 Rh1CG201800 Rh1DG212800
rosa_wichuraiana	Rw1G018480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1059, 2324
AarI	CACCTGC	1 cut(s)	643
Acc16I	TGCGCA	1 cut(s)	952
Acc36I	ACCTGC	1 cut(s)	643
AccB1I	GGYRCC	1 cut(s)	2398
AccII	CGCG	2 cut(s)	1542, 1596
AccIII	TCCGGA	1 cut(s)	1879
AciI	CCGC	5 cut(s)	685, 1462, 1561, 1904, 2645
AclWI	GGATC	9 cut(s)	328, 959, 1268, 1291, 1402, 1842, 2076, 2655, 2667
AcoI	YGGCCR	4 cut(s)	584, 1463, 1562, 1769
AcsI	RAATTY	4 cut(s)	8, 154, 1979, 2173
AcuI	CTGAAG	5 cut(s)	30, 351, 1779, 1883, 2222
AcvI	CACGTG	1 cut(s)	1865
AfaI	GTAC	7 cut(s)	871, 1088, 1223, 1228, 1329, 2410, 2628
AfiI	CCNNNNNNNGG	6 cut(s)	1461, 2085, 2623, 2723, 2830, 2831
AflII	CTTAAG	1 cut(s)	2291
AhlI	ACTAGT	2 cut(s)	985, 2132
AjnI	CCWGG	4 cut(s)	1330, 2064, 2084, 2249
AjuI	GAANNNNNNNTTGG	4 cut(s)	1648, 1680, 2624, 2656
AleI	CACNNNNGTG	1 cut(s)	2439
Alw21I	GWGCWC	2 cut(s)	808, 2436
Alw26I	GTCTC	7 cut(s)	369, 859, 1359, 1482, 2019, 2064, 2222
Alw44I	GTGCAC	1 cut(s)	2432
AlwI	GGATC	9 cut(s)	328, 959, 1268, 1291, 1402, 1842, 2076, 2655, 2667
AlwNI	CAGNNNCTG	3 cut(s)	252, 329, 374
Ama87I	CYCGRG	1 cut(s)	1633
Aor13HI	TCCGGA	1 cut(s)	1879
AoxI	GGCC	7 cut(s)	584, 785, 1463, 1562, 1769, 1792, 2075
ApaLI	GTGCAC	1 cut(s)	2432
ApeKI	GCWGC	7 cut(s)	68, 1342, 1500, 2246, 2606, 2768, 2797
ApoI	RAATTY	4 cut(s)	8, 154, 1979, 2173
ArsI	GACNNNNNNTTYG	2 cut(s)	2105, 2137
Asp700I	GAANNNNTTC	2 cut(s)	501, 2636
AspA2I	CCTAGG	1 cut(s)	1550
AspLEI	GCGC	4 cut(s)	953, 1500, 1542, 1598
AspS9I	GGNCC	7 cut(s)	182, 514, 786, 828, 1793, 2076, 2143
AsuC2I	CCSGG	1 cut(s)	1111
AsuHPI	GGTGA	8 cut(s)	104, 674, 727, 1236, 1427, 2376, 2426, 2710
AsuII	TTCGAA	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	1633
AvaII	GGWCC	4 cut(s)	182, 514, 828, 2143
AvrII	CCTAGG	1 cut(s)	1550
AxyI	CCTNAGG	1 cut(s)	375
BaeGI	GKGCMC	3 cut(s)	2436, 2480, 2837
BalI	TGGCCA	1 cut(s)	1771
BanI	GGYRCC	1 cut(s)	2398
BanII	GRGCYC	1 cut(s)	553
BarI	GAAGNNNNNNTAC	2 cut(s)	1725, 1757
BbrPI	CACGTG	1 cut(s)	1865
BbsI	GAAGAC	2 cut(s)	1436, 2358
Bbv12I	GWGCWC	2 cut(s)	808, 2436
BbvI	GCAGC	7 cut(s)	80, 1329, 1512, 2233, 2593, 2755, 2784
BccI	CCATC	7 cut(s)	221, 341, 405, 1624, 1709, 1745, 2554
BceAI	ACGGC	1 cut(s)	850
BcgI	CGANNNNNNTGC	4 cut(s)	1926, 1960, 2308, 2342
BciT130I	CCWGG	4 cut(s)	1332, 2066, 2086, 2251
BclI	TGATCA	3 cut(s)	79, 1102, 1867
BcnI	CCSGG	1 cut(s)	1111
BcoDI	GTCTC	7 cut(s)	369, 859, 1359, 1482, 2019, 2064, 2222
BcuI	ACTAGT	2 cut(s)	985, 2132
BfaI	CTAG	8 cut(s)	132, 240, 546, 986, 1551, 1677, 1859, 2133
BfmI	CTRYAG	2 cut(s)	591, 2001
BfrI	CTTAAG	1 cut(s)	2291
BfuAI	ACCTGC	1 cut(s)	643
BlnI	CCTAGG	1 cut(s)	1550
BmcAI	AGTACT	1 cut(s)	2410
Bme1390I	CCNGG	5 cut(s)	1111, 1332, 2066, 2086, 2251
Bme18I	GGWCC	4 cut(s)	182, 514, 828, 2143
BmeT110I	CYCGRG	1 cut(s)	1633
BmgT120I	GGNCC	7 cut(s)	182, 514, 786, 828, 1793, 2076, 2143
BmiI	GGNNCC	7 cut(s)	552, 788, 819, 1709, 1795, 2181, 2400
BmrFI	CCNGG	5 cut(s)	1111, 1332, 2066, 2086, 2251
BmrI	ACTGGG	1 cut(s)	1699
BmsI	GCATC	5 cut(s)	190, 661, 1354, 1941, 2485
BmuI	ACTGGG	1 cut(s)	1699
BpiI	GAAGAC	2 cut(s)	1436, 2358
BpmI	CTGGAG	3 cut(s)	351, 2048, 2422
Bpu14I	TTCGAA	1 cut(s)	799
BpuEI	CTTGAG	1 cut(s)	2701
BpuMI	CCSGG	1 cut(s)	1111
Bsa29I	ATCGAT	1 cut(s)	646
BsaAI	YACGTR	1 cut(s)	1865
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaI	GGTCTC	1 cut(s)	2064
BsaJI	CCNNGG	4 cut(s)	918, 1550, 1682, 2298
BsaWI	WCCGGW	2 cut(s)	825, 1879
BsaXI	ACNNNNNCTCC	6 cut(s)	535, 565, 1356, 1386, 2046, 2076
Bsc4I	CCNNNNNNNGG	6 cut(s)	1461, 2085, 2623, 2723, 2830, 2831
Bse118I	RCCGGY	2 cut(s)	586, 1573
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	2 cut(s)	764, 1442
Bse8I	GATNNNNATC	1 cut(s)	1059
BseAI	TCCGGA	1 cut(s)	1879
BseBI	CCWGG	4 cut(s)	1332, 2066, 2086, 2251
BseCI	ATCGAT	1 cut(s)	646
BseDI	CCNNGG	4 cut(s)	918, 1550, 1682, 2298
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	6 cut(s)	1461, 2085, 2623, 2723, 2830, 2831
BseMI	GCAATG	2 cut(s)	764, 1442
BseMII	CTCAG	4 cut(s)	366, 1008, 1899, 2583
BseSI	GKGCMC	3 cut(s)	2436, 2480, 2837
BseXI	GCAGC	7 cut(s)	80, 1329, 1512, 2233, 2593, 2755, 2784
BseYI	CCCAGC	1 cut(s)	2195
BsgI	GTGCAG	1 cut(s)	1803
Bsh1236I	CGCG	2 cut(s)	1542, 1596
Bsh1285I	CGRYCG	2 cut(s)	646, 1546
BshFI	GGCC	7 cut(s)	586, 787, 1465, 1564, 1771, 1794, 2077
BshNI	GGYRCC	1 cut(s)	2398
BshVI	ATCGAT	1 cut(s)	646
BsiEI	CGRYCG	2 cut(s)	646, 1546
BsiHKAI	GWGCWC	2 cut(s)	808, 2436
BsiHKCI	CYCGRG	1 cut(s)	1633
BsiSI	CCGG	5 cut(s)	587, 826, 1110, 1574, 1880
BslFI	GGGAC	3 cut(s)	1126, 1574, 2107
BslI	CCNNNNNNNGG	6 cut(s)	1461, 2085, 2623, 2723, 2830, 2831
BsmAI	GTCTC	7 cut(s)	369, 859, 1359, 1482, 2019, 2064, 2222
BsmFI	GGGAC	3 cut(s)	1126, 1574, 2107
BsnI	GGCC	7 cut(s)	586, 787, 1465, 1564, 1771, 1794, 2077
Bso31I	GGTCTC	1 cut(s)	2064
BsoBI	CYCGRG	1 cut(s)	1633
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	5 cut(s)	553, 808, 2436, 2480, 2837
Bsp13I	TCCGGA	1 cut(s)	1879
Bsp19I	CCATGG	1 cut(s)	918
BspACI	CCGC	5 cut(s)	685, 1462, 1561, 1904, 2645
BspANI	GGCC	7 cut(s)	586, 787, 1465, 1564, 1771, 1794, 2077
BspCNI	CTCAG	4 cut(s)	367, 1009, 1900, 2584
BspDI	ATCGAT	1 cut(s)	646
BspEI	TCCGGA	1 cut(s)	1879
BspFNI	CGCG	2 cut(s)	1542, 1596
BspLI	GGNNCC	7 cut(s)	552, 788, 819, 1709, 1795, 2181, 2400
BspMI	ACCTGC	1 cut(s)	643
BspPI	GGATC	9 cut(s)	328, 959, 1268, 1291, 1402, 1842, 2076, 2655, 2667
BspT104I	TTCGAA	1 cut(s)	799
BspT107I	GGYRCC	1 cut(s)	2398
BspTI	CTTAAG	1 cut(s)	2291
BspTNI	GGTCTC	1 cut(s)	2064
BsrDI	GCAATG	2 cut(s)	764, 1442
BsrFI	RCCGGY	2 cut(s)	586, 1573
BssAI	RCCGGY	2 cut(s)	586, 1573
BssECI	CCNNGG	4 cut(s)	918, 1550, 1682, 2298
BssT1I	CCWWGG	3 cut(s)	918, 1550, 1682
Bst2UI	CCWGG	4 cut(s)	1332, 2066, 2086, 2251
Bst6I	CTCTTC	2 cut(s)	1818, 2388
BstAFI	CTTAAG	1 cut(s)	2291
BstBAI	YACGTR	1 cut(s)	1865
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	5 cut(s)	429, 462, 588, 1038, 2244
BstDEI	CTNAG	6 cut(s)	375, 1017, 1139, 1908, 2472, 2592
BstDSI	CCRYGG	2 cut(s)	918, 2298
BstFNI	CGCG	2 cut(s)	1542, 1596
BstHHI	GCGC	4 cut(s)	953, 1500, 1542, 1598
BstMAI	GTCTC	7 cut(s)	369, 859, 1359, 1482, 2019, 2064, 2222
BstMCI	CGRYCG	2 cut(s)	646, 1546
BstMWI	GCNNNNNNNGC	3 cut(s)	424, 1570, 1579
BstNI	CCWGG	4 cut(s)	1332, 2066, 2086, 2251
BstNSI	RCATGY	2 cut(s)	2235, 2246
BstSCI	CCNGG	5 cut(s)	1109, 1330, 2064, 2084, 2249
BstSFI	CTRYAG	2 cut(s)	591, 2001
BstSLI	GKGCMC	3 cut(s)	2436, 2480, 2837
BstUI	CGCG	2 cut(s)	1542, 1596
BstV1I	GCAGC	7 cut(s)	80, 1329, 1512, 2233, 2593, 2755, 2784
BstV2I	GAAGAC	2 cut(s)	1436, 2358
BstX2I	RGATCY	2 cut(s)	1394, 2081
BstXI	CCANNNNNNTGG	3 cut(s)	524, 1301, 1689
BstYI	RGATCY	2 cut(s)	1394, 2081
Bsu15I	ATCGAT	1 cut(s)	646
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	7 cut(s)	586, 787, 1465, 1564, 1771, 1794, 2077
BsuTUI	ATCGAT	1 cut(s)	646
BtgI	CCRYGG	2 cut(s)	918, 2298
BtsIMutI	CAGTG	5 cut(s)	284, 375, 894, 1687, 2446
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	5 cut(s)	429, 462, 588, 1038, 2244
CaiI	CAGNNNCTG	3 cut(s)	252, 329, 374
CfoI	GCGC	4 cut(s)	953, 1500, 1542, 1598
Cfr10I	RCCGGY	2 cut(s)	586, 1573
Cfr13I	GGNCC	7 cut(s)	182, 514, 786, 828, 1793, 2076, 2143
ClaI	ATCGAT	1 cut(s)	646
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	7 cut(s)	870, 1087, 1222, 1227, 1328, 2409, 2627
CviQI	GTAC	7 cut(s)	870, 1087, 1222, 1227, 1328, 2409, 2627
DdeI	CTNAG	6 cut(s)	375, 1017, 1139, 1908, 2472, 2592
DraI	TTTAAA	1 cut(s)	285
EaeI	YGGCCR	4 cut(s)	584, 1463, 1562, 1769
Eam1104I	CTCTTC	2 cut(s)	1818, 2388
EarI	CTCTTC	2 cut(s)	1818, 2388
EciI	GGCGGA	1 cut(s)	2660
Eco130I	CCWWGG	3 cut(s)	918, 1550, 1682
Eco24I	GRGCYC	1 cut(s)	553
Eco31I	GGTCTC	1 cut(s)	2064
Eco32I	GATATC	1 cut(s)	1014
Eco47I	GGWCC	4 cut(s)	182, 514, 828, 2143
Eco57I	CTGAAG	5 cut(s)	30, 351, 1779, 1883, 2222
Eco72I	CACGTG	1 cut(s)	1865
Eco81I	CCTNAGG	1 cut(s)	375
Eco88I	CYCGRG	1 cut(s)	1633
EcoO109I	RGGNCCY	1 cut(s)	1793
EcoRII	CCWGG	4 cut(s)	1330, 2064, 2084, 2249
EcoRV	GATATC	1 cut(s)	1014
EcoT14I	CCWWGG	3 cut(s)	918, 1550, 1682
EcoT38I	GRGCYC	1 cut(s)	553
ErhI	CCWWGG	3 cut(s)	918, 1550, 1682
FaqI	GGGAC	3 cut(s)	1126, 1574, 2107
FauNDI	CATATG	1 cut(s)	979
FbaI	TGATCA	3 cut(s)	79, 1102, 1867
FriOI	GRGCYC	1 cut(s)	553
FspBI	CTAG	8 cut(s)	132, 240, 546, 986, 1551, 1677, 1859, 2133
FspI	TGCGCA	1 cut(s)	952
GlaI	GCGC	4 cut(s)	952, 1499, 1541, 1597
GsaI	CCCAGC	1 cut(s)	2199
GsuI	CTGGAG	3 cut(s)	351, 2048, 2422
HaeIII	GGCC	7 cut(s)	586, 787, 1465, 1564, 1771, 1794, 2077
HapII	CCGG	5 cut(s)	587, 826, 1110, 1574, 1880
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	4 cut(s)	953, 1500, 1542, 1598
Hin6I	GCGC	4 cut(s)	951, 1498, 1540, 1596
HinP1I	GCGC	4 cut(s)	951, 1498, 1540, 1596
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HindIII	AAGCTT	3 cut(s)	30, 211, 1734
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	5 cut(s)	587, 826, 1110, 1574, 1880
HphI	GGTGA	8 cut(s)	104, 674, 727, 1236, 1427, 2376, 2426, 2710
Hpy166II	GTNNAC	7 cut(s)	490, 619, 870, 1742, 2143, 2417, 2434
Hpy188I	TCNGA	9 cut(s)	79, 116, 325, 484, 756, 1018, 1102, 1147, 2019
Hpy8I	GTNNAC	7 cut(s)	490, 619, 870, 1742, 2143, 2417, 2434
Hpy99I	CGWCG	1 cut(s)	1573
HpyCH4IV	ACGT	3 cut(s)	1407, 1864, 2376
HpyF10VI	GCNNNNNNNGC	3 cut(s)	424, 1570, 1579
HpyF3I	CTNAG	6 cut(s)	375, 1017, 1139, 1908, 2472, 2592
HpySE526I	ACGT	3 cut(s)	1407, 1864, 2376
HspAI	GCGC	4 cut(s)	951, 1498, 1540, 1596
Kpn2I	TCCGGA	1 cut(s)	1879
KroI	GCCGGC	1 cut(s)	586
KroNI	GCCGGC	1 cut(s)	588
Ksp22I	TGATCA	3 cut(s)	79, 1102, 1867
KspAI	GTTAAC	1 cut(s)	619
LmnI	GCTCC	4 cut(s)	556, 823, 1603, 1718
Lsp1109I	GCAGC	7 cut(s)	80, 1329, 1512, 2233, 2593, 2755, 2784
LweI	GCATC	5 cut(s)	190, 661, 1354, 1941, 2485
MaeI	CTAG	8 cut(s)	132, 240, 546, 986, 1551, 1677, 1859, 2133
MaeII	ACGT	3 cut(s)	1407, 1864, 2376
MaeIII	GTNAC	7 cut(s)	137, 272, 998, 1408, 1628, 1911, 2050
MfeI	CAATTG	2 cut(s)	729, 2032
MflI	RGATCY	2 cut(s)	1394, 2081
MhlI	GDGCHC	5 cut(s)	553, 808, 2436, 2480, 2837
MlsI	TGGCCA	1 cut(s)	1771
MluNI	TGGCCA	1 cut(s)	1771
MlyI	GAGTC	2 cut(s)	751, 1625
MmeI	TCCRAC	4 cut(s)	992, 1679, 1949, 2153
Mox20I	TGGCCA	1 cut(s)	1771
MroI	TCCGGA	1 cut(s)	1879
MroNI	GCCGGC	1 cut(s)	586
MroXI	GAANNNNTTC	2 cut(s)	501, 2636
MscI	TGGCCA	1 cut(s)	1771
MslI	CAYNNNNRTG	3 cut(s)	657, 1881, 2439
Msp20I	TGGCCA	1 cut(s)	1771
MspA1I	CMGCKG	2 cut(s)	2575, 2606
MspCI	CTTAAG	1 cut(s)	2291
MspI	CCGG	5 cut(s)	587, 826, 1110, 1574, 1880
MspR9I	CCNGG	5 cut(s)	1111, 1332, 2066, 2086, 2251
MunI	CAATTG	2 cut(s)	729, 2032
MvaI	CCWGG	4 cut(s)	1332, 2066, 2086, 2251
MvnI	CGCG	2 cut(s)	1542, 1596
MwoI	GCNNNNNNNGC	3 cut(s)	424, 1570, 1579
NaeI	GCCGGC	1 cut(s)	588
NciI	CCSGG	1 cut(s)	1111
NcoI	CCATGG	1 cut(s)	918
NdeI	CATATG	1 cut(s)	979
NgoMIV	GCCGGC	1 cut(s)	586
NlaIV	GGNNCC	7 cut(s)	552, 788, 819, 1709, 1795, 2181, 2400
NmeAIII	GCCGAG	1 cut(s)	704
NmuCI	GTSAC	2 cut(s)	998, 1628
NsbI	TGCGCA	1 cut(s)	952
NspI	RCATGY	2 cut(s)	2235, 2246
NspV	TTCGAA	1 cut(s)	799
OliI	CACNNNNGTG	1 cut(s)	2439
PaeI	GCATGC	1 cut(s)	2246
PaeR7I	CTCGAG	1 cut(s)	1633
PaqCI	CACCTGC	1 cut(s)	643
PcsI	WCGNNNNNNNCGW	2 cut(s)	805, 1600
PdiI	GCCGGC	1 cut(s)	588
PdmI	GAANNNNTTC	2 cut(s)	501, 2636
PfeI	GAWTC	9 cut(s)	679, 842, 1093, 1385, 1439, 1804, 2285, 2459, 2507
PfoI	TCCNGGA	1 cut(s)	2084
Ple19I	CGATCG	2 cut(s)	646, 1546
PleI	GAGTC	2 cut(s)	751, 1625
PmaCI	CACGTG	1 cut(s)	1865
PmlI	CACGTG	1 cut(s)	1865
PpsI	GAGTC	2 cut(s)	751, 1625
Ppu21I	YACGTR	1 cut(s)	1865
PsiI	TTATAA	2 cut(s)	1059, 2324
Psp6I	CCWGG	4 cut(s)	1330, 2064, 2084, 2249
PspCI	CACGTG	1 cut(s)	1865
PspFI	CCCAGC	1 cut(s)	2195
PspGI	CCWGG	4 cut(s)	1330, 2064, 2084, 2249
PspN4I	GGNNCC	7 cut(s)	552, 788, 819, 1709, 1795, 2181, 2400
PspPI	GGNCC	7 cut(s)	182, 514, 786, 828, 1793, 2076, 2143
PspXI	VCTCGAGB	1 cut(s)	1633
PstNI	CAGNNNCTG	3 cut(s)	252, 329, 374
PsuI	RGATCY	2 cut(s)	1394, 2081
PvuI	CGATCG	2 cut(s)	646, 1546
PvuII	CAGCTG	2 cut(s)	2575, 2606
RsaI	GTAC	7 cut(s)	871, 1088, 1223, 1228, 1329, 2410, 2628
RsaNI	GTAC	7 cut(s)	870, 1087, 1222, 1227, 1328, 2409, 2627
RseI	CAYNNNNRTG	3 cut(s)	657, 1881, 2439
Sau96I	GGNCC	7 cut(s)	182, 514, 786, 828, 1793, 2076, 2143
ScaI	AGTACT	1 cut(s)	2410
SchI	GAGTC	2 cut(s)	751, 1625
ScrFI	CCNGG	5 cut(s)	1111, 1332, 2066, 2086, 2251
SduI	GDGCHC	5 cut(s)	553, 808, 2436, 2480, 2837
SfaNI	GCATC	5 cut(s)	190, 661, 1354, 1941, 2485
SfcI	CTRYAG	2 cut(s)	591, 2001
Sfr274I	CTCGAG	1 cut(s)	1633
SfuI	TTCGAA	1 cut(s)	799
SgrAI	CRCCGGYG	1 cut(s)	1573
SinI	GGWCC	4 cut(s)	182, 514, 828, 2143
SlaI	CTCGAG	1 cut(s)	1633
SmiMI	CAYNNNNRTG	3 cut(s)	657, 1881, 2439
SmlI	CTYRAG	3 cut(s)	1633, 2291, 2680
SmoI	CTYRAG	3 cut(s)	1633, 2291, 2680
SpeI	ACTAGT	2 cut(s)	985, 2132
SphI	GCATGC	1 cut(s)	2246
SsiI	CCGC	5 cut(s)	685, 1462, 1561, 1904, 2645
SspI	AATATT	1 cut(s)	1786
SspMI	CTAG	8 cut(s)	132, 240, 546, 986, 1551, 1677, 1859, 2133
StyD4I	CCNGG	5 cut(s)	1109, 1330, 2064, 2084, 2249
StyI	CCWWGG	3 cut(s)	918, 1550, 1682
TaiI	ACGT	3 cut(s)	1410, 1867, 2379
TaqI	TCGA	7 cut(s)	646, 760, 799, 1546, 1634, 1837, 2212
TatI	WGTACW	4 cut(s)	869, 1086, 1226, 2408
TauI	GCSGC	3 cut(s)	1465, 1564, 1906
TfiI	GAWTC	9 cut(s)	679, 842, 1093, 1385, 1439, 1804, 2285, 2459, 2507
TscAI	CASTG	5 cut(s)	284, 375, 901, 1694, 2446
TseFI	GTSAC	2 cut(s)	998, 1628
TseI	GCWGC	7 cut(s)	68, 1342, 1500, 2246, 2606, 2768, 2797
Tsp45I	GTSAC	2 cut(s)	998, 1628
TspDTI	ATGAA	8 cut(s)	13, 210, 942, 996, 1008, 1038, 1338, 1431
TspGWI	ACGGA	2 cut(s)	1209, 1945
TspRI	CASTG	5 cut(s)	284, 375, 901, 1694, 2446
Vha464I	CTTAAG	1 cut(s)	2291
VneI	GTGCAC	1 cut(s)	2432
VpaK11BI	GGWCC	4 cut(s)	182, 514, 828, 2143
XapI	RAATTY	4 cut(s)	8, 154, 1979, 2173
XceI	RCATGY	2 cut(s)	2235, 2246
XhoI	CTCGAG	1 cut(s)	1633
XmaJI	CCTAGG	1 cut(s)	1550
XmnI	GAANNNNTTC	2 cut(s)	501, 2636
XspI	CTAG	8 cut(s)	132, 240, 546, 986, 1551, 1677, 1859, 2133
ZrmI	AGTACT	1 cut(s)	2410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.