Nucleotidyltransferase domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G00060 AT4G00060 AT4G00060 AT4G00060 |
| fragaria_vesca | FvH4_7g11041 FvH4_7g11041 FvH4_7g11041 FvH4_7g11041 |
| malus_domestica | MD07G1115100.v1.1 |
| prunus_persica | Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 Prupe.2G137200_v2.0.a1 |
| pyrus_communis | pycom07g10010 |
| rosa_chinensis | RchiOBHm_Chr1g0349071 |
| rosa_laevigata | RLG00000028609 |
| rosa_multiflora | Rmu_sc0009855.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00306210 |
| rosa_rugosa | Rorug01G0199800 |
| rosa_samantha | Rh1AG217400 Rh1BG182800 Rh1CG201800 Rh1DG212800 |
| rosa_wichuraiana | Rw1G018480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 519, 1779, 3044 |
| AarI | CACCTGC | 1 cut(s) | 1363 |
| Acc16I | TGCGCA | 2 cut(s) | 62, 1672 |
| Acc36I | ACCTGC | 2 cut(s) | 145, 1363 |
| AccB1I | GGYRCC | 1 cut(s) | 3118 |
| AccII | CGCG | 2 cut(s) | 2262, 2316 |
| AccIII | TCCGGA | 1 cut(s) | 2599 |
| AciI | CCGC | 5 cut(s) | 1405, 2182, 2281, 2624, 3365 |
| AcoI | YGGCCR | 4 cut(s) | 1304, 2183, 2282, 2489 |
| AcsI | RAATTY | 8 cut(s) | 95, 233, 473, 728, 874, 2699, 2893, 3499 |
| AcuI | CTGAAG | 6 cut(s) | 161, 750, 1071, 2499, 2603, 2942 |
| AcvI | CACGTG | 1 cut(s) | 2585 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 455, 2181, 2805, 3343 |
| AflII | CTTAAG | 1 cut(s) | 3011 |
| AhlI | ACTAGT | 2 cut(s) | 1705, 2852 |
| AjnI | CCWGG | 5 cut(s) | 454, 2050, 2784, 2804, 2969 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2368, 2400, 3344, 3376 |
| AleI | CACNNNNGTG | 1 cut(s) | 3159 |
| Alw21I | GWGCWC | 2 cut(s) | 1528, 3156 |
| Alw26I | GTCTC | 7 cut(s) | 1089, 1579, 2079, 2202, 2739, 2784, 2942 |
| Alw44I | GTGCAC | 1 cut(s) | 3152 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 972, 1049, 1094 |
| Ama87I | CYCGRG | 1 cut(s) | 2353 |
| Aor13HI | TCCGGA | 1 cut(s) | 2599 |
| AoxI | GGCC | 8 cut(s) | 440, 1304, 1505, 2183, 2282, 2489, 2512, 2795 |
| ApaLI | GTGCAC | 1 cut(s) | 3152 |
| ApeKI | GCWGC | 7 cut(s) | 656, 788, 2062, 2220, 2966, 3326, 3594 |
| ApoI | RAATTY | 8 cut(s) | 95, 233, 473, 728, 874, 2699, 2893, 3499 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 80, 112, 2825, 2857 |
| AseI | ATTAAT | 1 cut(s) | 3615 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 236, 1221, 3356 |
| AspA2I | CCTAGG | 1 cut(s) | 2270 |
| AspLEI | GCGC | 5 cut(s) | 63, 1673, 2220, 2262, 2318 |
| AspS9I | GGNCC | 8 cut(s) | 423, 902, 1234, 1506, 1548, 2513, 2796, 2863 |
| AsuC2I | CCSGG | 1 cut(s) | 1831 |
| AsuHPI | GGTGA | 7 cut(s) | 824, 1394, 1447, 1956, 2147, 3096, 3146 |
| AsuII | TTCGAA | 2 cut(s) | 1519, 3661 |
| AvaI | CYCGRG | 1 cut(s) | 2353 |
| AvaII | GGWCC | 5 cut(s) | 423, 902, 1234, 1548, 2863 |
| AvrII | CCTAGG | 1 cut(s) | 2270 |
| AxyI | CCTNAGG | 1 cut(s) | 1095 |
| BaeGI | GKGCMC | 2 cut(s) | 3156, 3200 |
| BalI | TGGCCA | 1 cut(s) | 2491 |
| BanI | GGYRCC | 1 cut(s) | 3118 |
| BanII | GRGCYC | 1 cut(s) | 1273 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2445, 2477 |
| BbrPI | CACGTG | 1 cut(s) | 2585 |
| BbsI | GAAGAC | 2 cut(s) | 2156, 3078 |
| Bbv12I | GWGCWC | 2 cut(s) | 1528, 3156 |
| BbvI | GCAGC | 7 cut(s) | 643, 800, 2049, 2232, 2953, 3313, 3606 |
| BccI | CCATC | 7 cut(s) | 941, 1061, 1125, 2344, 2429, 2465, 3274 |
| BceAI | ACGGC | 2 cut(s) | 390, 1570 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2646, 2680, 3028, 3062 |
| BciT130I | CCWGG | 5 cut(s) | 456, 2052, 2786, 2806, 2971 |
| BclI | TGATCA | 3 cut(s) | 799, 1822, 2587 |
| BcnI | CCSGG | 1 cut(s) | 1831 |
| BcoDI | GTCTC | 7 cut(s) | 1089, 1579, 2079, 2202, 2739, 2784, 2942 |
| BcuI | ACTAGT | 2 cut(s) | 1705, 2852 |
| BfmI | CTRYAG | 2 cut(s) | 1311, 2721 |
| BfrI | CTTAAG | 1 cut(s) | 3011 |
| BfuAI | ACCTGC | 2 cut(s) | 145, 1363 |
| BlnI | CCTAGG | 1 cut(s) | 2270 |
| BmcAI | AGTACT | 1 cut(s) | 3130 |
| Bme1390I | CCNGG | 6 cut(s) | 456, 1831, 2052, 2786, 2806, 2971 |
| Bme18I | GGWCC | 5 cut(s) | 423, 902, 1234, 1548, 2863 |
| BmeT110I | CYCGRG | 1 cut(s) | 2353 |
| BmgT120I | GGNCC | 8 cut(s) | 423, 902, 1234, 1506, 1548, 2513, 2796, 2863 |
| BmiI | GGNNCC | 8 cut(s) | 425, 1272, 1508, 1539, 2429, 2515, 2901, 3120 |
| BmrFI | CCNGG | 6 cut(s) | 456, 1831, 2052, 2786, 2806, 2971 |
| BmrI | ACTGGG | 1 cut(s) | 2419 |
| BmsI | GCATC | 7 cut(s) | 142, 910, 1381, 2074, 2661, 3205, 3606 |
| BmuI | ACTGGG | 1 cut(s) | 2419 |
| BpiI | GAAGAC | 2 cut(s) | 2156, 3078 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 288, 320 |
| BpmI | CTGGAG | 4 cut(s) | 1071, 2768, 3142, 3425 |
| Bpu10I | CCTNAGC | 2 cut(s) | 145, 495 |
| Bpu14I | TTCGAA | 2 cut(s) | 1519, 3661 |
| BpuEI | CTTGAG | 2 cut(s) | 724, 3421 |
| BpuMI | CCSGG | 1 cut(s) | 1831 |
| Bsa29I | ATCGAT | 1 cut(s) | 1366 |
| BsaAI | YACGTR | 1 cut(s) | 2585 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1779 |
| BsaI | GGTCTC | 1 cut(s) | 2784 |
| BsaJI | CCNNGG | 6 cut(s) | 455, 1638, 2270, 2402, 3018, 3533 |
| BsaWI | WCCGGW | 2 cut(s) | 1545, 2599 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1255, 1285, 2076, 2106, 2766, 2796 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 455, 2181, 2805, 3343 |
| Bse118I | RCCGGY | 2 cut(s) | 1306, 2293 |
| Bse21I | CCTNAGG | 1 cut(s) | 1095 |
| Bse3DI | GCAATG | 2 cut(s) | 1484, 2162 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1779 |
| BseAI | TCCGGA | 1 cut(s) | 2599 |
| BseBI | CCWGG | 5 cut(s) | 456, 2052, 2786, 2806, 2971 |
| BseCI | ATCGAT | 1 cut(s) | 1366 |
| BseDI | CCNNGG | 6 cut(s) | 455, 1638, 2270, 2402, 3018, 3533 |
| BseJI | GATNNNNATC | 1 cut(s) | 1779 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 455, 2181, 2805, 3343 |
| BseMI | GCAATG | 2 cut(s) | 1484, 2162 |
| BseMII | CTCAG | 4 cut(s) | 1086, 1728, 2619, 3303 |
| BseRI | GAGGAG | 1 cut(s) | 721 |
| BseSI | GKGCMC | 2 cut(s) | 3156, 3200 |
| BseXI | GCAGC | 7 cut(s) | 643, 800, 2049, 2232, 2953, 3313, 3606 |
| BseYI | CCCAGC | 2 cut(s) | 115, 2915 |
| BsgI | GTGCAG | 3 cut(s) | 310, 668, 2523 |
| Bsh1236I | CGCG | 2 cut(s) | 2262, 2316 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1366, 2266 |
| BshFI | GGCC | 8 cut(s) | 442, 1306, 1507, 2185, 2284, 2491, 2514, 2797 |
| BshNI | GGYRCC | 1 cut(s) | 3118 |
| BshVI | ATCGAT | 1 cut(s) | 1366 |
| BsiEI | CGRYCG | 2 cut(s) | 1366, 2266 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1528, 3156 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2353 |
| BsiSI | CCGG | 5 cut(s) | 1307, 1546, 1830, 2294, 2600 |
| BslFI | GGGAC | 4 cut(s) | 409, 1846, 2294, 2827 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 455, 2181, 2805, 3343 |
| BsmAI | GTCTC | 7 cut(s) | 1089, 1579, 2079, 2202, 2739, 2784, 2942 |
| BsmFI | GGGAC | 4 cut(s) | 409, 1846, 2294, 2827 |
| BsnI | GGCC | 8 cut(s) | 442, 1306, 1507, 2185, 2284, 2491, 2514, 2797 |
| Bso31I | GGTCTC | 1 cut(s) | 2784 |
| BsoBI | CYCGRG | 1 cut(s) | 2353 |
| Bsp119I | TTCGAA | 2 cut(s) | 1519, 3661 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1273, 1528, 3156, 3200 |
| Bsp13I | TCCGGA | 1 cut(s) | 2599 |
| Bsp1407I | TGTACA | 1 cut(s) | 464 |
| Bsp19I | CCATGG | 1 cut(s) | 1638 |
| BspACI | CCGC | 5 cut(s) | 1405, 2182, 2281, 2624, 3365 |
| BspANI | GGCC | 8 cut(s) | 442, 1306, 1507, 2185, 2284, 2491, 2514, 2797 |
| BspCNI | CTCAG | 4 cut(s) | 1087, 1729, 2620, 3304 |
| BspDI | ATCGAT | 1 cut(s) | 1366 |
| BspEI | TCCGGA | 1 cut(s) | 2599 |
| BspFNI | CGCG | 2 cut(s) | 2262, 2316 |
| BspHI | TCATGA | 1 cut(s) | 3712 |
| BspLI | GGNNCC | 8 cut(s) | 425, 1272, 1508, 1539, 2429, 2515, 2901, 3120 |
| BspMI | ACCTGC | 2 cut(s) | 145, 1363 |
| BspT104I | TTCGAA | 2 cut(s) | 1519, 3661 |
| BspT107I | GGYRCC | 1 cut(s) | 3118 |
| BspTI | CTTAAG | 1 cut(s) | 3011 |
| BspTNI | GGTCTC | 1 cut(s) | 2784 |
| BsrDI | GCAATG | 2 cut(s) | 1484, 2162 |
| BsrFI | RCCGGY | 2 cut(s) | 1306, 2293 |
| BsrGI | TGTACA | 1 cut(s) | 464 |
| BssAI | RCCGGY | 2 cut(s) | 1306, 2293 |
| BssECI | CCNNGG | 6 cut(s) | 455, 1638, 2270, 2402, 3018, 3533 |
| BssT1I | CCWWGG | 3 cut(s) | 1638, 2270, 2402 |
| Bst2UI | CCWGG | 5 cut(s) | 456, 2052, 2786, 2806, 2971 |
| Bst6I | CTCTTC | 2 cut(s) | 2538, 3108 |
| BstAFI | CTTAAG | 1 cut(s) | 3011 |
| BstAUI | TGTACA | 1 cut(s) | 464 |
| BstBAI | YACGTR | 1 cut(s) | 2585 |
| BstBI | TTCGAA | 2 cut(s) | 1519, 3661 |
| BstC8I | GCNNGC | 6 cut(s) | 9, 1149, 1182, 1308, 1758, 2964 |
| BstDSI | CCRYGG | 2 cut(s) | 1638, 3018 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 453 |
| BstFNI | CGCG | 2 cut(s) | 2262, 2316 |
| BstHHI | GCGC | 5 cut(s) | 63, 1673, 2220, 2262, 2318 |
| BstMAI | GTCTC | 7 cut(s) | 1089, 1579, 2079, 2202, 2739, 2784, 2942 |
| BstMCI | CGRYCG | 2 cut(s) | 1366, 2266 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 146, 1144, 2290, 2299 |
| BstNI | CCWGG | 5 cut(s) | 456, 2052, 2786, 2806, 2971 |
| BstNSI | RCATGY | 3 cut(s) | 623, 2955, 2966 |
| BstSCI | CCNGG | 6 cut(s) | 454, 1829, 2050, 2784, 2804, 2969 |
| BstSFI | CTRYAG | 2 cut(s) | 1311, 2721 |
| BstSLI | GKGCMC | 2 cut(s) | 3156, 3200 |
| BstUI | CGCG | 2 cut(s) | 2262, 2316 |
| BstV1I | GCAGC | 7 cut(s) | 643, 800, 2049, 2232, 2953, 3313, 3606 |
| BstV2I | GAAGAC | 2 cut(s) | 2156, 3078 |
| BstX2I | RGATCY | 3 cut(s) | 499, 2114, 2801 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1244, 2021, 2409, 3482 |
| BstYI | RGATCY | 3 cut(s) | 499, 2114, 2801 |
| Bsu15I | ATCGAT | 1 cut(s) | 1366 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1095 |
| BsuRI | GGCC | 8 cut(s) | 442, 1306, 1507, 2185, 2284, 2491, 2514, 2797 |
| BsuTUI | ATCGAT | 1 cut(s) | 1366 |
| BtgI | CCRYGG | 2 cut(s) | 1638, 3018 |
| BtsIMutI | CAGTG | 7 cut(s) | 543, 1004, 1095, 1614, 2407, 3166, 3677 |
| BveI | ACCTGC | 2 cut(s) | 145, 1363 |
| Cac8I | GCNNGC | 6 cut(s) | 9, 1149, 1182, 1308, 1758, 2964 |
| CaiI | CAGNNNCTG | 3 cut(s) | 972, 1049, 1094 |
| CciI | TCATGA | 1 cut(s) | 3712 |
| CfoI | GCGC | 5 cut(s) | 63, 1673, 2220, 2262, 2318 |
| Cfr10I | RCCGGY | 2 cut(s) | 1306, 2293 |
| Cfr13I | GGNCC | 8 cut(s) | 423, 902, 1234, 1506, 1548, 2513, 2796, 2863 |
| ClaI | ATCGAT | 1 cut(s) | 1366 |
| CseI | GACGC | 3 cut(s) | 562, 794, 3657 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 63, 98 |
| DraI | TTTAAA | 1 cut(s) | 1005 |
| EaeI | YGGCCR | 4 cut(s) | 1304, 2183, 2282, 2489 |
| Eam1104I | CTCTTC | 2 cut(s) | 2538, 3108 |
| EarI | CTCTTC | 2 cut(s) | 2538, 3108 |
| EciI | GGCGGA | 1 cut(s) | 3380 |
| Eco130I | CCWWGG | 3 cut(s) | 1638, 2270, 2402 |
| Eco24I | GRGCYC | 1 cut(s) | 1273 |
| Eco31I | GGTCTC | 1 cut(s) | 2784 |
| Eco32I | GATATC | 3 cut(s) | 184, 198, 1734 |
| Eco47I | GGWCC | 5 cut(s) | 423, 902, 1234, 1548, 2863 |
| Eco57I | CTGAAG | 6 cut(s) | 161, 750, 1071, 2499, 2603, 2942 |
| Eco72I | CACGTG | 1 cut(s) | 2585 |
| Eco81I | CCTNAGG | 1 cut(s) | 1095 |
| Eco88I | CYCGRG | 1 cut(s) | 2353 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 453 |
| EcoO109I | RGGNCCY | 2 cut(s) | 423, 2513 |
| EcoRII | CCWGG | 5 cut(s) | 454, 2050, 2784, 2804, 2969 |
| EcoRV | GATATC | 3 cut(s) | 184, 198, 1734 |
| EcoT14I | CCWWGG | 3 cut(s) | 1638, 2270, 2402 |
| EcoT38I | GRGCYC | 1 cut(s) | 1273 |
| ErhI | CCWWGG | 3 cut(s) | 1638, 2270, 2402 |
| FaqI | GGGAC | 4 cut(s) | 409, 1846, 2294, 2827 |
| FauNDI | CATATG | 1 cut(s) | 1699 |
| FbaI | TGATCA | 3 cut(s) | 799, 1822, 2587 |
| FriOI | GRGCYC | 1 cut(s) | 1273 |
| FspI | TGCGCA | 2 cut(s) | 62, 1672 |
| GlaI | GCGC | 5 cut(s) | 62, 1672, 2219, 2261, 2317 |
| GsaI | CCCAGC | 2 cut(s) | 119, 2919 |
| GsuI | CTGGAG | 4 cut(s) | 1071, 2768, 3142, 3425 |
| HaeIII | GGCC | 8 cut(s) | 442, 1306, 1507, 2185, 2284, 2491, 2514, 2797 |
| HapII | CCGG | 5 cut(s) | 1307, 1546, 1830, 2294, 2600 |
| HgaI | GACGC | 3 cut(s) | 562, 794, 3657 |
| HhaI | GCGC | 5 cut(s) | 63, 1673, 2220, 2262, 2318 |
| Hin6I | GCGC | 5 cut(s) | 61, 1671, 2218, 2260, 2316 |
| HinP1I | GCGC | 5 cut(s) | 61, 1671, 2218, 2260, 2316 |
| HincII | GTYRAC | 1 cut(s) | 1339 |
| HindII | GTYRAC | 1 cut(s) | 1339 |
| HindIII | AAGCTT | 3 cut(s) | 750, 931, 2454 |
| HpaI | GTTAAC | 1 cut(s) | 1339 |
| HpaII | CCGG | 5 cut(s) | 1307, 1546, 1830, 2294, 2600 |
| HphI | GGTGA | 7 cut(s) | 824, 1394, 1447, 1956, 2147, 3096, 3146 |
| Hpy166II | GTNNAC | 8 cut(s) | 1210, 1339, 1590, 2462, 2863, 3137, 3154, 3685 |
| Hpy8I | GTNNAC | 8 cut(s) | 1210, 1339, 1590, 2462, 2863, 3137, 3154, 3685 |
| Hpy99I | CGWCG | 2 cut(s) | 556, 2293 |
| HpyCH4IV | ACGT | 3 cut(s) | 2127, 2584, 3096 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 146, 1144, 2290, 2299 |
| HpySE526I | ACGT | 3 cut(s) | 2127, 2584, 3096 |
| HspAI | GCGC | 5 cut(s) | 61, 1671, 2218, 2260, 2316 |
| Kpn2I | TCCGGA | 1 cut(s) | 2599 |
| KroI | GCCGGC | 1 cut(s) | 1306 |
| KroNI | GCCGGC | 1 cut(s) | 1308 |
| Ksp22I | TGATCA | 3 cut(s) | 799, 1822, 2587 |
| KspAI | GTTAAC | 1 cut(s) | 1339 |
| LmnI | GCTCC | 5 cut(s) | 25, 1276, 1543, 2323, 2438 |
| Lsp1109I | GCAGC | 7 cut(s) | 643, 800, 2049, 2232, 2953, 3313, 3606 |
| LweI | GCATC | 7 cut(s) | 142, 910, 1381, 2074, 2661, 3205, 3606 |
| MaeII | ACGT | 3 cut(s) | 2127, 2584, 3096 |
| MaeIII | GTNAC | 7 cut(s) | 857, 992, 1718, 2128, 2348, 2631, 2770 |
| MfeI | CAATTG | 3 cut(s) | 1449, 2752, 3652 |
| MflI | RGATCY | 3 cut(s) | 499, 2114, 2801 |
| MhlI | GDGCHC | 4 cut(s) | 1273, 1528, 3156, 3200 |
| MlsI | TGGCCA | 1 cut(s) | 2491 |
| MluNI | TGGCCA | 1 cut(s) | 2491 |
| MlyI | GAGTC | 3 cut(s) | 551, 1471, 2345 |
| MmeI | TCCRAC | 7 cut(s) | 619, 1712, 2399, 2669, 2873, 3625, 3656 |
| Mox20I | TGGCCA | 1 cut(s) | 2491 |
| MroI | TCCGGA | 1 cut(s) | 2599 |
| MroNI | GCCGGC | 1 cut(s) | 1306 |
| MroXI | GAANNNNTTC | 3 cut(s) | 236, 1221, 3356 |
| MscI | TGGCCA | 1 cut(s) | 2491 |
| MslI | CAYNNNNRTG | 6 cut(s) | 20, 191, 1377, 2601, 3159, 3615 |
| Msp20I | TGGCCA | 1 cut(s) | 2491 |
| MspA1I | CMGCKG | 3 cut(s) | 656, 3295, 3326 |
| MspCI | CTTAAG | 1 cut(s) | 3011 |
| MspI | CCGG | 5 cut(s) | 1307, 1546, 1830, 2294, 2600 |
| MspR9I | CCNGG | 6 cut(s) | 456, 1831, 2052, 2786, 2806, 2971 |
| MunI | CAATTG | 3 cut(s) | 1449, 2752, 3652 |
| MvaI | CCWGG | 5 cut(s) | 456, 2052, 2786, 2806, 2971 |
| MvnI | CGCG | 2 cut(s) | 2262, 2316 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 146, 1144, 2290, 2299 |
| NaeI | GCCGGC | 1 cut(s) | 1308 |
| NciI | CCSGG | 1 cut(s) | 1831 |
| NcoI | CCATGG | 1 cut(s) | 1638 |
| NdeI | CATATG | 1 cut(s) | 1699 |
| NgoMIV | GCCGGC | 1 cut(s) | 1306 |
| NlaIV | GGNNCC | 8 cut(s) | 425, 1272, 1508, 1539, 2429, 2515, 2901, 3120 |
| NmeAIII | GCCGAG | 2 cut(s) | 1424, 3514 |
| NmuCI | GTSAC | 2 cut(s) | 1718, 2348 |
| NsbI | TGCGCA | 2 cut(s) | 62, 1672 |
| NspI | RCATGY | 3 cut(s) | 623, 2955, 2966 |
| NspV | TTCGAA | 2 cut(s) | 1519, 3661 |
| OliI | CACNNNNGTG | 1 cut(s) | 3159 |
| PaeI | GCATGC | 1 cut(s) | 2966 |
| PaeR7I | CTCGAG | 1 cut(s) | 2353 |
| PagI | TCATGA | 1 cut(s) | 3712 |
| PaqCI | CACCTGC | 1 cut(s) | 1363 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1525, 2320, 3541 |
| PdiI | GCCGGC | 1 cut(s) | 1308 |
| PdmI | GAANNNNTTC | 3 cut(s) | 236, 1221, 3356 |
| PfoI | TCCNGGA | 1 cut(s) | 2804 |
| Ple19I | CGATCG | 2 cut(s) | 1366, 2266 |
| PleI | GAGTC | 3 cut(s) | 550, 1471, 2345 |
| PmaCI | CACGTG | 1 cut(s) | 2585 |
| PmlI | CACGTG | 1 cut(s) | 2585 |
| PpsI | GAGTC | 3 cut(s) | 550, 1471, 2345 |
| Ppu21I | YACGTR | 1 cut(s) | 2585 |
| PpuMI | RGGWCCY | 1 cut(s) | 423 |
| PshBI | ATTAAT | 1 cut(s) | 3615 |
| PsiI | TTATAA | 3 cut(s) | 519, 1779, 3044 |
| Psp5II | RGGWCCY | 1 cut(s) | 423 |
| Psp6I | CCWGG | 5 cut(s) | 454, 2050, 2784, 2804, 2969 |
| PspCI | CACGTG | 1 cut(s) | 2585 |
| PspFI | CCCAGC | 2 cut(s) | 115, 2915 |
| PspGI | CCWGG | 5 cut(s) | 454, 2050, 2784, 2804, 2969 |
| PspN4I | GGNNCC | 8 cut(s) | 425, 1272, 1508, 1539, 2429, 2515, 2901, 3120 |
| PspPI | GGNCC | 8 cut(s) | 423, 902, 1234, 1506, 1548, 2513, 2796, 2863 |
| PspPPI | RGGWCCY | 1 cut(s) | 423 |
| PspXI | VCTCGAGB | 1 cut(s) | 2353 |
| PstNI | CAGNNNCTG | 3 cut(s) | 972, 1049, 1094 |
| PsuI | RGATCY | 3 cut(s) | 499, 2114, 2801 |
| PvuI | CGATCG | 2 cut(s) | 1366, 2266 |
| PvuII | CAGCTG | 3 cut(s) | 656, 3295, 3326 |
| RseI | CAYNNNNRTG | 6 cut(s) | 20, 191, 1377, 2601, 3159, 3615 |
| Sau96I | GGNCC | 8 cut(s) | 423, 902, 1234, 1506, 1548, 2513, 2796, 2863 |
| ScaI | AGTACT | 1 cut(s) | 3130 |
| SchI | GAGTC | 3 cut(s) | 551, 1471, 2345 |
| ScrFI | CCNGG | 6 cut(s) | 456, 1831, 2052, 2786, 2806, 2971 |
| SduI | GDGCHC | 4 cut(s) | 1273, 1528, 3156, 3200 |
| SfaNI | GCATC | 7 cut(s) | 142, 910, 1381, 2074, 2661, 3205, 3606 |
| SfcI | CTRYAG | 2 cut(s) | 1311, 2721 |
| Sfr274I | CTCGAG | 1 cut(s) | 2353 |
| SfuI | TTCGAA | 2 cut(s) | 1519, 3661 |
| SgrAI | CRCCGGYG | 1 cut(s) | 2293 |
| SinI | GGWCC | 5 cut(s) | 423, 902, 1234, 1548, 2863 |
| SlaI | CTCGAG | 1 cut(s) | 2353 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 20, 191, 1377, 2601, 3159, 3615 |
| SmlI | CTYRAG | 4 cut(s) | 703, 2353, 3011, 3400 |
| SmoI | CTYRAG | 4 cut(s) | 703, 2353, 3011, 3400 |
| SpeI | ACTAGT | 2 cut(s) | 1705, 2852 |
| SphI | GCATGC | 1 cut(s) | 2966 |
| SsiI | CCGC | 5 cut(s) | 1405, 2182, 2281, 2624, 3365 |
| SspI | AATATT | 1 cut(s) | 2506 |
| StyD4I | CCNGG | 6 cut(s) | 454, 1829, 2050, 2784, 2804, 2969 |
| StyI | CCWWGG | 3 cut(s) | 1638, 2270, 2402 |
| TaiI | ACGT | 3 cut(s) | 2130, 2587, 3099 |
| TaqI | TCGA | 9 cut(s) | 1366, 1480, 1519, 2266, 2354, 2557, 2932, 3600, 3661 |
| TatI | WGTACW | 6 cut(s) | 464, 506, 1589, 1806, 1946, 3128 |
| TauI | GCSGC | 3 cut(s) | 2185, 2284, 2626 |
| TscAI | CASTG | 7 cut(s) | 543, 1004, 1095, 1621, 2414, 3166, 3677 |
| TseFI | GTSAC | 2 cut(s) | 1718, 2348 |
| TseI | GCWGC | 7 cut(s) | 656, 788, 2062, 2220, 2966, 3326, 3594 |
| Tsp45I | GTSAC | 2 cut(s) | 1718, 2348 |
| TspGWI | ACGGA | 3 cut(s) | 1929, 2665, 3541 |
| TspRI | CASTG | 7 cut(s) | 543, 1004, 1095, 1621, 2414, 3166, 3677 |
| Vha464I | CTTAAG | 1 cut(s) | 3011 |
| VneI | GTGCAC | 1 cut(s) | 3152 |
| VpaK11BI | GGWCC | 5 cut(s) | 423, 902, 1234, 1548, 2863 |
| VspI | ATTAAT | 1 cut(s) | 3615 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 453 |
| XapI | RAATTY | 8 cut(s) | 95, 233, 473, 728, 874, 2699, 2893, 3499 |
| XbaI | TCTAGA | 1 cut(s) | 584 |
| XceI | RCATGY | 3 cut(s) | 623, 2955, 2966 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 19 |
| XhoI | CTCGAG | 1 cut(s) | 2353 |
| XmaJI | CCTAGG | 1 cut(s) | 2270 |
| XmnI | GAANNNNTTC | 3 cut(s) | 236, 1221, 3356 |
| ZrmI | AGTACT | 1 cut(s) | 3130 |