Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010532

Physical Location & Seq

Genomic Coordinates Forward (+)

50376026 .. 50383053

Gene Structure 7028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0393200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGCTGAAGCCAGGTCTCTCAGCTCTCGTCACCGGCGGAGCTTCTGGAATTGGATGTCACGATGAAGATTATGACATTCTCTCAACAAGGATCTCATGCTATTTGCATACTTTCTGCAAATGGTACCATATCAAATGTCACACTTCGACAGCCCAGTACTTCTGGAGTTGCAAAGGCCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCAACTAAGAATGAAGGAACAAAGAGCAGGTCAGGTGGCATGAGCGTCTCTTTGGCAAGTTCAGATGGTAGAGTTGTTGGACTGGCTGGTCTATTGATAGCTACAGGACCTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

110

Amino Acids

11.77

Weight (kDa)

8.31

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620
rosa_chinensis	RchiOBHm_Chr1g0375971
rosa_laevigata	RLG00000026639
rosa_multiflora	Rmu_sc0024503.1_g000001 Rmu_ssc0000116.1_g000001 Rmu_ssc0000116.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282460
rosa_rugosa	Rorug01G0393100 Rorug01G0393200 Rorug02G0306500 Rorug02G0306600
rosa_wichuraiana	Rw0G010340 Rw1G035880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	234
Acc65I	GGTACC	1 cut(s)	126
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	2 cut(s)	101, 214
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	128, 161
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	4 cut(s)	7, 26, 44, 317
AluI	AGCT	4 cut(s)	7, 26, 44, 317
Alw26I	GTCTC	2 cut(s)	23, 268
AlwI	GGATC	2 cut(s)	101, 214
AlwNI	CAGNNNCTG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	178
ArsI	GACNNNNNNTTYG	2 cut(s)	230, 262
Asp718I	GGTACC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	126
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	15
BcoDI	GTCTC	2 cut(s)	23, 268
BfmI	CTRYAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	234
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	157, 303
BseBI	CCWGG	1 cut(s)	15
BseGI	GGATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	157, 303
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	126
BsiSI	CCGG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	23, 268
BsmBI	CGTCTC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	93, 206
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	2 cut(s)	101, 214
BspT107I	GGYRCC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	35
BsrI	ACTGG	2 cut(s)	157, 303
BssAI	RCCGGY	1 cut(s)	35
BssMI	GATC	2 cut(s)	93, 206
Bst2UI	CCWGG	1 cut(s)	15
BstDEI	CTNAG	2 cut(s)	22, 222
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	2 cut(s)	96, 209
BstMAI	GTCTC	2 cut(s)	23, 268
BstMBI	GATC	2 cut(s)	93, 206
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstSFI	CTRYAG	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	323
CseI	GACGC	1 cut(s)	250
Csp6I	GTAC	2 cut(s)	127, 160
CviAII	CATG	2 cut(s)	99, 256
CviJI	RGCY	8 cut(s)	7, 13, 26, 44, 155, 180, 302, 317
CviKI_1	RGCY	8 cut(s)	7, 13, 26, 44, 155, 180, 302, 317
CviQI	GTAC	2 cut(s)	127, 160
DdeI	CTNAG	2 cut(s)	22, 222
DpnI	GATC	2 cut(s)	95, 208
DpnII	GATC	2 cut(s)	93, 206
DrdI	GACNNNNNNGTC	1 cut(s)	303
DseDI	GACNNNNNNGTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	102, 259
FaiI	YATR	8 cut(s)	75, 100, 111, 132, 211, 213, 215, 257
FatI	CATG	2 cut(s)	98, 255
FokI	GGATG	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	36
HgaI	GACGC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	102, 259
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	4 cut(s)	48, 62, 166, 204
HpyAV	CCTTC	1 cut(s)	224
HpyCH4V	TGCA	3 cut(s)	109, 120, 174
HpyF3I	CTNAG	2 cut(s)	22, 222
Hsp92II	CATG	2 cut(s)	102, 259
KpnI	GGTACC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	93, 206
LmnI	GCTCC	2 cut(s)	4, 41
MaeIII	GTNAC	3 cut(s)	31, 59, 140
MalI	GATC	2 cut(s)	95, 208
MboI	GATC	2 cut(s)	93, 206
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	93
MluCI	AATT	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	274
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	93, 206
NlaIII	CATG	2 cut(s)	102, 259
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	3 cut(s)	31, 59, 140
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	2 cut(s)	128, 161
RsaNI	GTAC	2 cut(s)	127, 160
Sau3AI	GATC	2 cut(s)	93, 206
Sau96I	GGNCC	1 cut(s)	323
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	15
SetI	ASST	8 cut(s)	9, 19, 28, 46, 248, 253, 319, 328
SfcI	CTRYAG	1 cut(s)	318
SgrAI	CRCCGGYG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	323
Sse9I	AATT	1 cut(s)	51
SsiI	CCGC	1 cut(s)	39
StyD4I	CCNGG	1 cut(s)	13
TaqI	TCGA	1 cut(s)	149
TasI	AATT	1 cut(s)	51
TatI	WGTACW	1 cut(s)	159
TseFI	GTSAC	3 cut(s)	31, 59, 140
Tsp45I	GTSAC	3 cut(s)	31, 59, 140
TspDTI	ATGAA	3 cut(s)	81, 186, 243
VpaK11BI	GGWCC	1 cut(s)	323
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.