Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010532

Physical Location & Seq

Genomic Coordinates Reverse (-)

34687245 .. 34689781

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0306600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAAGAGATGATGAACAAGTTTTTCGAGTCCGTGGGTTCGTTCTTCGGCGGAGGAGATCAGATCCCGTGGTGCGATCGAGACGTCATCCTCGGTTGTGAGAGAGAAGTCGCAGAGGCGAACAAAGGTGACTCAGAGGAGCACAAGAGCGAAAGCATAATGAGGTTGTCATGGGCTCTTGTTCACTCAAGGCAACCTGAAGATGTGCAGCGTGGAATAGCCATGCTTGAAGCTTCATTGGCCAACACTAACTCCCCTTTGCATCAAAGAGAGAAGCTTTACCTTCTGGCCCTCGGATACTACAGAACTGATGACTATTCAAAAAGCCGTAATCTTCTCGATCAATGCTTAGAGATTGCACCTGATTGGAGGCAGGCTCTGTCCCTTAAGAAGATAGTTGAGGATCAAATTGCTAAAGATGGCTTTATTGGAATAGGCCTCACTGCTAGTGCTATTGGACTTATAGCAGGTGGGATTGTTGCTGCCTTGGTTCGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

166

Amino Acids

18.5

Weight (kDa)

5.12

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fis1_TPR_N	PF14852	51 - 82	4.3e-12	Fis1 N-terminal tetratricopeptide repeat
Fis1_TPR_C	PF14853	90 - 141	4.9e-22	Fis1 C-terminal tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620
rosa_chinensis	RchiOBHm_Chr1g0375971
rosa_laevigata	RLG00000026639
rosa_multiflora	Rmu_sc0024503.1_g000001 Rmu_ssc0000116.1_g000001 Rmu_ssc0000116.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282460
rosa_rugosa	Rorug01G0393100 Rorug01G0393200 Rorug02G0306500 Rorug02G0306600
rosa_wichuraiana	Rw0G010340 Rw1G035880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	458, 486
AatII	GACGTC	1 cut(s)	87
Acc36I	ACCTGC	2 cut(s)	458, 486
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	58, 411
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	219
AcyI	GRCGYC	1 cut(s)	84
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	230, 321
AluBI	AGCT	2 cut(s)	233, 277
AluI	AGCT	2 cut(s)	233, 277
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	58, 411
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	3 cut(s)	240, 288, 436
ApeKI	GCWGC	2 cut(s)	208, 482
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	220, 469
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	1 cut(s)	312
BciVI	GTATCC	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	447
BfmI	CTRYAG	1 cut(s)	301
BfrI	CTTAAG	1 cut(s)	386
BfuAI	ACCTGC	2 cut(s)	458, 486
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	2 cut(s)	209, 483
BlsI	GCNGC	2 cut(s)	210, 484
BmgT120I	GGNCC	1 cut(s)	289
BmsI	GCATC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpuEI	CTTGAG	1 cut(s)	172
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	5 cut(s)	33, 68, 91, 292, 486
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
BseDI	CCNNGG	5 cut(s)	33, 68, 91, 292, 486
BseGI	GGATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	2 cut(s)	69, 152
BseXI	GCAGC	2 cut(s)	220, 469
BsgI	GTGCAG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	3 cut(s)	242, 290, 438
BsiEI	CGRYCG	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	367
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	242, 290, 438
Bsp1286I	GDGCHC	2 cut(s)	144, 178
Bsp143I	GATC	5 cut(s)	58, 63, 76, 340, 403
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	3 cut(s)	242, 290, 438
BspCNI	CTCAG	1 cut(s)	146
BspMI	ACCTGC	2 cut(s)	458, 486
BspPI	GGATC	2 cut(s)	58, 411
BspTI	CTTAAG	1 cut(s)	386
BssECI	CCNNGG	5 cut(s)	33, 68, 91, 292, 486
BssMI	GATC	5 cut(s)	58, 63, 76, 340, 403
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	486
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	133, 349
BstDSI	CCRYGG	2 cut(s)	33, 68
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	5 cut(s)	61, 66, 79, 343, 406
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	5 cut(s)	58, 63, 76, 340, 403
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	220, 469
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	242, 290, 438
BtgI	CCRYGG	2 cut(s)	33, 68
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	2 cut(s)	458, 486
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	289
CviAII	CATG	2 cut(s)	171, 223
DdeI	CTNAG	2 cut(s)	133, 349
DpnI	GATC	5 cut(s)	60, 65, 78, 342, 405
DpnII	GATC	5 cut(s)	58, 63, 76, 340, 403
EaeI	YGGCCR	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	486
Eco147I	AGGCCT	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	486
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	2 cut(s)	174, 226
FaiI	YATR	4 cut(s)	158, 172, 224, 464
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	2 cut(s)	170, 222
Fnu4HI	GCNGC	2 cut(s)	209, 483
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	2 cut(s)	209, 483
FspBI	CTAG	1 cut(s)	447
GluI	GCNGC	2 cut(s)	209, 483
HaeIII	GGCC	3 cut(s)	242, 290, 438
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	174, 226
HindIII	AAGCTT	2 cut(s)	231, 275
HinfI	GANTC	2 cut(s)	29, 131
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	3 cut(s)	63, 136, 296
Hpy188III	TCNNGA	2 cut(s)	80, 338
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	1 cut(s)	293
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	208, 262, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	133, 349
HpySE526I	ACGT	1 cut(s)	84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	174, 226
Kzo9I	GATC	5 cut(s)	58, 63, 76, 340, 403
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	6 cut(s)	210, 272, 359, 375, 453, 481
Lsp1109I	GCAGC	2 cut(s)	220, 469
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	447
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	5 cut(s)	60, 65, 78, 342, 405
MboI	GATC	5 cut(s)	58, 63, 76, 340, 403
MboII	GAAGA	5 cut(s)	17, 37, 212, 326, 403
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	2 cut(s)	144, 178
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	1 cut(s)	408
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	38, 125
MnlI	CCTC	9 cut(s)	47, 101, 109, 130, 156, 302, 363, 394, 449
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	1 cut(s)	387
Msp20I	TGGCCA	1 cut(s)	242
MspCI	CTTAAG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	5 cut(s)	58, 63, 76, 340, 403
NlaIII	CATG	2 cut(s)	174, 226
NmuCI	GTSAC	1 cut(s)	128
PaqCI	CACCTGC	2 cut(s)	458, 486
PceI	AGGCCT	1 cut(s)	438
PkrI	GCNGC	2 cut(s)	210, 484
Ple19I	CGATCG	1 cut(s)	79
PleI	GAGTC	2 cut(s)	37, 125
PpsI	GAGTC	2 cut(s)	37, 125
PspPI	GGNCC	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	63
PvuI	CGATCG	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	2 cut(s)	209, 483
Sau3AI	GATC	5 cut(s)	58, 63, 76, 340, 403
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	2 cut(s)	38, 125
SduI	GDGCHC	2 cut(s)	144, 178
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	187, 386
SmoI	CTYRAG	2 cut(s)	187, 386
Sse9I	AATT	1 cut(s)	408
SseBI	AGGCCT	1 cut(s)	438
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	447
StuI	AGGCCT	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	486
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	27, 79, 339
TasI	AATT	1 cut(s)	408
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	2 cut(s)	208, 482
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	29, 225
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	448
Vha464I	CTTAAG	1 cut(s)	386
XspI	CTAG	1 cut(s)	447
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.