Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010532

Physical Location & Seq

Genomic Coordinates Reverse (-)

34683296 .. 34686268

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0306500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAGGCGCTACCCATCCCGACGGAGACGTACAAGCTTGGGTTCATCGGAGCAGGCAAAATGGCGGAGAGCATCGCCAGAGGAGTCGTCCGATCAGGCATTCTCCCCCCAAATCGCATCACTACCTCCCACTCCAGCCCCATTCGACGCCAAGCCTTCGAGTCCTTCGGCGTCCACCTCCTCCCTCGCAACGACGACGTGGTTGAAGAGAGTGATGTCATCATTTTCGCTGTCAAACCTCAAGTTGTCAAAGATGTAGTTTTGCAACTGAGGCCATTGCTTTCCAGAAAGAAGCTGCTTGTTTCAATTGCAGCTGGAGTCAAATTGAAAGATCTCCAGGATTGGGCCGGGCACAGCCGATTTATCAGGGTAATGCCCAATACTCCTTCTGCTGTTGGTGTTGCAGCATCAGTTTTGAGCTTGGGAGGAGCTGCAACAGAACAAGATGGAGACTTAATAGCTGAATTATTTGGATCAGTAGGCAAGATTTGGAAAGCCGATGAAAAACTGTTTGATGCAATTACTGGCCTAAGCGGTAGTGGTCCTGCATATATATATTTGGCTATAGAGGCTTTGGCAGATGGAGGAGTTGCTGCAGGTCTACCGCGAGAACTTGCATTGGGTCTAGCATCTCAAACTGTATTAGGAGCAGCATCTATGGCTACTAGTTCTGGGAAGCATCCAGGTCAGCTAAAAGATGATGTAACATCACCTGGTGGAACTACCATTACTGGCATTCATGAGCTGGAGAAGGGTGGATTTCGTGGAATATTGATGAATGCAGTTCTTGCTGCTGCCAGGCGCAGCCGAGAGCTTTCACAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

275

Amino Acids

28.82

Weight (kDa)

8.8

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F420_oxidored	PF03807	12 - 106	3.1e-19	NADP oxidoreductase coenzyme F420-dependent
P5CR_dimer	PF14748	168 - 272	5.2e-42	Pyrroline-5-carboxylate reductase dimerisation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620 FvH4_2g38620
rosa_chinensis	RchiOBHm_Chr1g0375971
rosa_laevigata	RLG00000026639
rosa_multiflora	Rmu_sc0024503.1_g000001 Rmu_ssc0000116.1_g000001 Rmu_ssc0000116.1_g000009
rosa_roxburghii	Rroxscaffold_4G00282460
rosa_rugosa	Rorug01G0393100 Rorug01G0393200 Rorug02G0306500 Rorug02G0306600
rosa_wichuraiana	Rw0G010340 Rw1G035880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	587
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	607
AciI	CCGC	3 cut(s)	65, 534, 605
AclWI	GGATC	1 cut(s)	481
AcyI	GRCGYC	2 cut(s)	148, 171
AdeI	CACNNNGTG	1 cut(s)	716
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	206, 306, 328
AhlI	ACTAGT	1 cut(s)	665
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	4 cut(s)	336, 682, 712, 797
AluBI	AGCT	9 cut(s)	37, 295, 314, 420, 431, 461, 691, 745, 814
AluI	AGCT	9 cut(s)	37, 295, 314, 420, 431, 461, 691, 745, 814
Alw26I	GTCTC	2 cut(s)	20, 444
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	3 cut(s)	272, 345, 526
ApeKI	GCWGC	9 cut(s)	295, 311, 404, 431, 593, 650, 791, 794, 804
AspLEI	GCGC	2 cut(s)	10, 804
AspS9I	GGNCC	2 cut(s)	345, 542
AsuC2I	CCSGG	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	702
AvaII	GGWCC	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	354
BbvI	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
BccI	CCATC	3 cut(s)	23, 440, 575
BciT130I	CCWGG	4 cut(s)	338, 684, 714, 799
BcnI	CCSGG	1 cut(s)	349
BcoDI	GTCTC	2 cut(s)	20, 444
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	3 cut(s)	626, 666, 826
BfmI	CTRYAG	2 cut(s)	564, 594
BfoI	RGCGCY	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	587
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
BlsI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 652, 793, 796, 806
Bme1390I	CCNGG	5 cut(s)	338, 349, 684, 714, 799
Bme18I	GGWCC	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	199
BmgT120I	GGNCC	2 cut(s)	345, 542
BmrFI	CCNGG	5 cut(s)	338, 349, 684, 714, 799
BmsI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
BpmI	CTGGAG	4 cut(s)	118, 320, 336, 767
Bpu10I	CCTNAGC	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	349
BsaHI	GRCGYC	2 cut(s)	148, 171
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	2 cut(s)	529, 736
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	4 cut(s)	338, 684, 714, 799
BseGI	GGATG	2 cut(s)	15, 679
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	529, 736
BseRI	GAGGAG	4 cut(s)	96, 170, 441, 600
BseSI	GKGCMC	1 cut(s)	354
BseXI	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
Bsh1236I	CGCG	1 cut(s)	607
BshFI	GGCC	3 cut(s)	274, 347, 528
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	20, 444
BsmBI	CGTCTC	1 cut(s)	20
BsmI	GAATGC	3 cut(s)	99, 735, 784
BsnI	GGCC	3 cut(s)	274, 347, 528
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	92, 331, 473
BspACI	CCGC	3 cut(s)	65, 534, 605
BspANI	GGCC	3 cut(s)	274, 347, 528
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	739
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	587
BspPI	GGATC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	2 cut(s)	529, 736
BssMI	GATC	3 cut(s)	92, 331, 473
BssNI	GRCGYC	2 cut(s)	148, 171
Bst2UI	CCWGG	4 cut(s)	338, 684, 714, 799
Bst4CI	ACNGT	2 cut(s)	510, 640
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	2 cut(s)	148, 171
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	269, 530
BstF5I	GGATG	2 cut(s)	15, 679
BstFNI	CGCG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 804
BstKTI	GATC	3 cut(s)	95, 334, 476
BstMAI	GTCTC	2 cut(s)	20, 444
BstMBI	GATC	3 cut(s)	92, 331, 473
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 569, 659, 788
BstNI	CCWGG	4 cut(s)	338, 684, 714, 799
BstSCI	CCNGG	5 cut(s)	336, 347, 682, 712, 797
BstSFI	CTRYAG	2 cut(s)	564, 594
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	274, 347, 528
BtgZI	GCGATG	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	15, 679
BveI	ACCTGC	1 cut(s)	587
Cac8I	GCNNGC	1 cut(s)	55
CciI	TCATGA	1 cut(s)	739
CfoI	GCGC	2 cut(s)	10, 804
Cfr13I	GGNCC	2 cut(s)	345, 542
CseI	GACGC	2 cut(s)	156, 160
CsiI	ACCWGGT	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	740
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	2 cut(s)	269, 530
DpnI	GATC	3 cut(s)	94, 333, 475
DpnII	GATC	3 cut(s)	92, 331, 473
DraIII	CACNNNGTG	1 cut(s)	716
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
EciI	GGCGGA	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	542
EcoRII	CCWGG	4 cut(s)	336, 682, 712, 797
Esp3I	CGTCTC	1 cut(s)	20
FaeI	CATG	1 cut(s)	743
FaiI	YATR	7 cut(s)	550, 552, 554, 556, 566, 659, 741
FatI	CATG	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
FokI	GGATG	2 cut(s)	2, 666
Fsp4HI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
FspBI	CTAG	3 cut(s)	626, 666, 826
GlaI	GCGC	2 cut(s)	9, 803
GluI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
GsuI	CTGGAG	4 cut(s)	118, 320, 336, 767
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	3 cut(s)	274, 347, 528
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	2 cut(s)	156, 160
HhaI	GCGC	2 cut(s)	10, 804
Hin1I	GRCGYC	2 cut(s)	148, 171
Hin1II	CATG	1 cut(s)	743
Hin6I	GCGC	2 cut(s)	8, 802
HinP1I	GCGC	2 cut(s)	8, 802
HindIII	AAGCTT	1 cut(s)	35
HinfI	GANTC	3 cut(s)	84, 161, 318
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	1 cut(s)	702
Hpy166II	GTNNAC	2 cut(s)	175, 602
Hpy188I	TCNGA	2 cut(s)	50, 92
Hpy188III	TCNNGA	3 cut(s)	19, 285, 740
Hpy8I	GTNNAC	2 cut(s)	175, 602
Hpy99I	CGWCG	4 cut(s)	25, 150, 197, 200
HpyAV	CCTTC	4 cut(s)	166, 175, 396, 745
HpyCH4III	ACNGT	2 cut(s)	510, 640
HpyCH4IV	ACGT	2 cut(s)	29, 198
HpyCH4V	TGCA	9 cut(s)	265, 311, 404, 434, 518, 548, 596, 617, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 569, 659, 788
HpyF3I	CTNAG	2 cut(s)	269, 530
HpySE526I	ACGT	2 cut(s)	29, 198
Hsp92I	GRCGYC	2 cut(s)	148, 171
Hsp92II	CATG	1 cut(s)	743
HspAI	GCGC	2 cut(s)	8, 802
Kzo9I	GATC	3 cut(s)	92, 331, 473
LmnI	GCTCC	3 cut(s)	50, 428, 647
Lsp1109I	GCAGC	9 cut(s)	282, 323, 416, 418, 580, 662, 778, 781, 816
LweI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
MabI	ACCWGGT	1 cut(s)	712
MaeI	CTAG	3 cut(s)	626, 666, 826
MaeII	ACGT	2 cut(s)	29, 198
MaeIII	GTNAC	1 cut(s)	703
MalI	GATC	3 cut(s)	94, 333, 475
MboI	GATC	3 cut(s)	92, 331, 473
MboII	GAAGA	1 cut(s)	218
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	4 cut(s)	306, 323, 464, 519
MlyI	GAGTC	3 cut(s)	93, 170, 327
MseI	TTAA	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	314
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	5 cut(s)	338, 349, 684, 714, 799
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	3 cut(s)	99, 735, 784
MvaI	CCWGG	4 cut(s)	338, 684, 714, 799
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	4 cut(s)	271, 569, 659, 788
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	3 cut(s)	92, 331, 473
NlaIII	CATG	1 cut(s)	743
PagI	TCATGA	1 cut(s)	739
PctI	GAATGC	3 cut(s)	99, 735, 784
PfoI	TCCNGGA	1 cut(s)	336
PkrI	GCNGC	9 cut(s)	297, 313, 406, 433, 595, 652, 793, 796, 806
PleI	GAGTC	3 cut(s)	92, 169, 326
PpsI	GAGTC	3 cut(s)	92, 169, 326
Psp6I	CCWGG	4 cut(s)	336, 682, 712, 797
PspGI	CCWGG	4 cut(s)	336, 682, 712, 797
PspPI	GGNCC	2 cut(s)	345, 542
PsrI	GAACNNNNNNTAC	2 cut(s)	712, 744
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	9 cut(s)	296, 312, 405, 432, 594, 651, 792, 795, 805
Sau3AI	GATC	3 cut(s)	92, 331, 473
Sau96I	GGNCC	2 cut(s)	345, 542
SchI	GAGTC	3 cut(s)	93, 170, 327
ScrFI	CCNGG	5 cut(s)	338, 349, 684, 714, 799
SduI	GDGCHC	1 cut(s)	354
SexAI	ACCWGGT	1 cut(s)	712
SfaNI	GCATC	7 cut(s)	81, 126, 416, 505, 638, 662, 688
SfcI	CTRYAG	2 cut(s)	564, 594
SinI	GGWCC	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	4 cut(s)	306, 323, 464, 519
SsiI	CCGC	3 cut(s)	65, 534, 605
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	3 cut(s)	626, 666, 826
StyD4I	CCNGG	5 cut(s)	336, 347, 682, 712, 797
TaaI	ACNGT	2 cut(s)	510, 640
TaiI	ACGT	2 cut(s)	32, 201
TaqI	TCGA	2 cut(s)	145, 159
TasI	AATT	4 cut(s)	306, 323, 464, 519
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TseI	GCWGC	9 cut(s)	295, 311, 404, 431, 593, 650, 791, 794, 804
TspDTI	ATGAA	4 cut(s)	34, 516, 728, 791
TspGWI	ACGGA	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	601
XspI	CTAG	3 cut(s)	626, 666, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.