Rorug01G0414700

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007218
Physical Location & Seq
Forward (+)
51843027 .. 51846748
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0414700.1

Sequence Viewer

Length: 600 bp
ATGGCGTCTGGCACAGAGAGTGATGAAGCCTCAGACACTCCAGAAATTTACAAAGACCCAGATGATGGGAGGCAGCGATTCTTGCTTGAATTGGAGTTCATCCAATGTCTCGCAAATCCCACTTACATTCACTATTTGGCTCAAAATCGGTACTTTGAAGATGAAGCCTTCATTGGGTACTTGAAATATCTTCAGTATTGGCAGCGTCCTGAGTACACCAAATTCATAATGTACCCTCATTGCTTGTTTTTCCTTGAGCAACTCCAAAATGCAAACTTTCGCAATGCAATGGCACATCCTGCCAACAAGGAATTGGCGCATAGGCAGCAATTCTACTTCTGGAAGAACTATAGGCACAACCGTTTGAAACACATATTACCGAGACCTCTTCCTGAACCTGAAGCTGCACCCCCCGCCTCTGCTCCGCCTCAGCAATCTCTGCCTCCTGTTCCACCTGTGCCAGCTGCAACCATTTCTGCTGCAGCTACTGCTCCTGCCCTTCCCCCTATGCAGTATGCTAACGCCCCTGGATCTGCTCTTGCAAAGAATGATGCAAGGAATAGTGCTGTTGATCGAAGAAAGAGAAAGAAAGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006631 GO:0006633 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

199

Amino Acids

22.83

Weight (kDa)

8.45

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med31 PF05669 25 - 117 9.4e-35 SOH1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 65
AciI CCGC 2 cut(s) 414, 425
AclWI GGATC 1 cut(s) 538
AcsI RAATTY 2 cut(s) 45, 221
AcuI CTGAAG 2 cut(s) 176, 420
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 152, 179, 215, 233
AfiI CCNNNNNNNGG 2 cut(s) 65, 174
AgsI TTSAA 4 cut(s) 89, 158, 184, 367
AjnI CCWGG 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 3 cut(s) 404, 464, 485
AluI AGCT 3 cut(s) 404, 464, 485
Alw26I GTCTC 2 cut(s) 113, 376
AlwI GGATC 1 cut(s) 538
AlwNI CAGNNNCTG 1 cut(s) 488
ApeKI GCWGC 7 cut(s) 73, 202, 325, 404, 464, 479, 482
ApoI RAATTY 2 cut(s) 45, 221
AspLEI GCGC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 7 cut(s) 85, 214, 337, 391, 451, 466, 494
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 113, 376
BfmI CTRYAG 2 cut(s) 349, 480
BisI GCNGC 7 cut(s) 74, 203, 326, 405, 465, 480, 483
BlsI GCNGC 7 cut(s) 75, 204, 327, 406, 466, 481, 484
Bme1390I CCNGG 1 cut(s) 528
BmrFI CCNGG 1 cut(s) 528
BmsI GCATC 1 cut(s) 541
BpmI CTGGAG 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 526
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 174
Bse3DI GCAATG 3 cut(s) 238, 289, 294
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 2 cut(s) 99, 295
BseLI CCNNNNNNNGG 2 cut(s) 65, 174
BseMI GCAATG 3 cut(s) 238, 289, 294
BseMII CTCAG 3 cut(s) 45, 201, 443
BseXI GCAGC 7 cut(s) 85, 214, 337, 391, 451, 466, 494
BsgI GTGCAG 1 cut(s) 390
BslI CCNNNNNNNGG 2 cut(s) 65, 174
BsmAI GTCTC 2 cut(s) 113, 376
Bso31I GGTCTC 1 cut(s) 376
Bsp143I GATC 2 cut(s) 530, 571
BspACI CCGC 2 cut(s) 414, 425
BspCNI CTCAG 3 cut(s) 44, 202, 442
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 1 cut(s) 538
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 3 cut(s) 238, 289, 294
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 2 cut(s) 530, 571
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 393
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 3 cut(s) 299, 439, 488
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 31, 210, 429
BstF5I GGATG 2 cut(s) 99, 295
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 2 cut(s) 533, 574
BstMAI GTCTC 2 cut(s) 113, 376
BstMBI GATC 2 cut(s) 530, 571
BstMWI GCNNNNNNNGC 6 cut(s) 82, 299, 325, 413, 439, 488
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 526
BstSFI CTRYAG 2 cut(s) 349, 480
BstV1I GCAGC 7 cut(s) 85, 214, 337, 391, 451, 466, 494
BstX2I RGATCY 1 cut(s) 530
BstYI RGATCY 1 cut(s) 530
BtsCI GGATG 2 cut(s) 99, 295
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 1 cut(s) 319
CseI GACGC 1 cut(s) 194
Csp6I GTAC 4 cut(s) 151, 178, 214, 232
CviJI RGCY 7 cut(s) 29, 140, 167, 404, 464, 485, 597
CviKI_1 RGCY 7 cut(s) 29, 140, 167, 404, 464, 485, 597
CviQI GTAC 4 cut(s) 151, 178, 214, 232
DdeI CTNAG 3 cut(s) 31, 210, 429
DpnI GATC 2 cut(s) 532, 573
DpnII GATC 2 cut(s) 530, 571
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 176, 420
EcoRII CCWGG 1 cut(s) 526
FaiI YATR 6 cut(s) 227, 321, 351, 374, 509, 516
FauI CCCGC 1 cut(s) 421
Fnu4HI GCNGC 7 cut(s) 74, 203, 326, 405, 465, 480, 483
FokI GGATG 2 cut(s) 86, 282
Fsp4HI GCNGC 7 cut(s) 74, 203, 326, 405, 465, 480, 483
GlaI GCGC 1 cut(s) 318
GluI GCNGC 7 cut(s) 74, 203, 326, 405, 465, 480, 483
GsuI CTGGAG 1 cut(s) 24
HgaI GACGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 1 cut(s) 78
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 41, 209, 340, 392
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 3 cut(s) 178, 509, 587
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4V TGCA 8 cut(s) 272, 287, 407, 467, 482, 511, 542, 554
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 299, 325, 413, 439, 488
HpyF3I CTNAG 3 cut(s) 31, 210, 429
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 317
Kzo9I GATC 2 cut(s) 530, 571
LmnI GCTCC 2 cut(s) 427, 496
Lsp1109I GCAGC 7 cut(s) 85, 214, 337, 391, 451, 466, 494
LweI GCATC 1 cut(s) 541
MalI GATC 2 cut(s) 532, 573
MboI GATC 2 cut(s) 530, 571
MboII GAAGA 5 cut(s) 170, 182, 355, 380, 588
MflI RGATCY 1 cut(s) 530
MluCI AATT 5 cut(s) 45, 89, 221, 311, 329
MnlI CCTC 7 cut(s) 40, 63, 246, 396, 427, 438, 453
MspA1I CMGCKG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 528
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 6 cut(s) 82, 299, 325, 413, 439, 488
NdeII GATC 2 cut(s) 530, 571
PfeI GAWTC 1 cut(s) 78
PflMI CCANNNNNTGG 1 cut(s) 65
PkrI GCNGC 7 cut(s) 75, 204, 327, 406, 466, 481, 484
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 530
PvuII CAGCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 152, 179, 215, 233
RsaNI GTAC 4 cut(s) 151, 178, 214, 232
SatI GCNGC 7 cut(s) 74, 203, 326, 405, 465, 480, 483
Sau3AI GATC 2 cut(s) 530, 571
ScrFI CCNGG 1 cut(s) 528
SetI ASST 6 cut(s) 388, 400, 406, 457, 466, 487
SfaNI GCATC 1 cut(s) 541
SfcI CTRYAG 2 cut(s) 349, 480
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 5 cut(s) 45, 89, 221, 311, 329
SsiI CCGC 2 cut(s) 414, 425
StyD4I CCNGG 1 cut(s) 526
TaaI ACNGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 574
TasI AATT 5 cut(s) 45, 89, 221, 311, 329
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 1 cut(s) 78
TseI GCWGC 7 cut(s) 73, 202, 325, 404, 464, 479, 482
TspDTI ATGAA 5 cut(s) 39, 88, 160, 177, 214
Van91I CCANNNNNTGG 1 cut(s) 65
XapI RAATTY 2 cut(s) 45, 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.