Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004990

Physical Location & Seq

Genomic Coordinates Reverse (-)

6713043 .. 6715121

Gene Structure 2079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0083300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGGAAGAAGGGGGTCCTGTACGCGTGTCAGACAGTAACGTTGTTGATCATACTCACAACGATGATCTGAGCCGTCAACTGGACATATACCCTCTCAGTTGCTACTACTTTGGATCCAAGGAAGCCATTCCTTTCAAGGATGAGACTTTAGCTGATCGTGTTCAGAGATTGAACTCCAACTATGCTGCTCATGGATTGAGGACTTGTGTAGAAGCAGTTATTTTGGTCGAGTTGTTCAAACATCCTCATATACTACTCTTGCAAGTAAGAAATTGCATCTTTAAGCTTCCTGGTGGTCGCTTAAGACCTGGTGAATTAGAGATTGATGGCTTGAAAAGAAAACTGTCGAGGAAGCTTTGTGTCAATGCTGATGCTGATGGGATTGCTTGGGAGGTGGGGGAATGCCTTGATGTATGGTGGAGGCCTGAATTCGAAACATTGCCTTGTCGAGACTTGCCGTCTACAGATAAAAACCCAAAGGAGTGCACGAAACTCTTTCTTGTAAAGTTGCCAGAAAGTCGCAAGTTCATTGTACCCAAAAACCTAAAATTGCTGGCTATTCCATTGTGCCAGATCAACAAAAATCGCGAGACGTATGGACCTATTATCTCTGGTGTTCCAGAGCTGCTATCAGATTTCACCTTCAACATTATAGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008239 GO:0009553 GO:0009561 GO:0016787 GO:0019538 GO:0032501 GO:0032502 GO:0043170 GO:0044238 GO:0048229 GO:0048856 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S28

Protein Analysis

221

Amino Acids

25.07

Weight (kDa)

6.23

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUDIX_2	PF13869	27 - 214	1.2e-65	Nucleotide hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004990)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18080 AT4G36190 AT4G36195 AT4G36195 AT4G36195
fragaria_vesca	FvH4_1g12120 FvH4_1g12120 FvH4_1g12120 FvH4_1g12120 FvH4_1g12120
malus_domestica	MD02G1110800.v1.1 MD15G1248500.v1.1 MD15G1248700.v1.1
prunus_persica	Prupe.7G165600_v2.0.a1 Prupe.7G165600_v2.0.a1
pyrus_communis	pycom02g10670 pycom15g21890
rosa_chinensis	RchiOBHm_Chr2g0099781
rosa_laevigata	RLG00000016913
rosa_multiflora	Rmu_co8503345.1_g000001 Rmu_sc0008864.1_g000009
rosa_roxburghii	Rroxscaffold_2G00142770
rosa_rugosa	Rorug02G0083200 Rorug02G0083300 Rorug02G0083300
rosa_samantha	Rh2AG132700 Rh2BG135500 Rh2CG136800 Rh2DG137300
rosa_wichuraiana	Rw2G010270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	464
AccII	CGCG	2 cut(s)	27, 591
AclI	AACGTT	1 cut(s)	42
AclWI	GGATC	2 cut(s)	111, 124
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	2 cut(s)	24, 537
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	5 cut(s)	139, 175, 241, 337, 649
AhdI	GACNNNNNGTC	1 cut(s)	460
AjnI	CCWGG	2 cut(s)	292, 310
AluBI	AGCT	5 cut(s)	155, 289, 358, 628, 662
AluI	AGCT	5 cut(s)	155, 289, 358, 628, 662
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	3 cut(s)	140, 447, 587
Alw44I	GTGCAC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	111, 124
AoxI	GGCC	1 cut(s)	425
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	2 cut(s)	188, 628
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	17, 602
AsuHPI	GGTGA	2 cut(s)	326, 634
AsuII	TTCGAA	1 cut(s)	435
AvaII	GGWCC	2 cut(s)	17, 602
BaeGI	GKGCMC	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	175, 615
BccI	CCATC	2 cut(s)	323, 374
BceAI	ACGGC	2 cut(s)	60, 445
BciT130I	CCWGG	2 cut(s)	294, 312
BclI	TGATCA	1 cut(s)	49
BcoDI	GTCTC	3 cut(s)	140, 447, 587
BfmI	CTRYAG	1 cut(s)	465
BfrI	CTTAAG	1 cut(s)	304
BisI	GCNGC	2 cut(s)	189, 629
BlsI	GCNGC	2 cut(s)	190, 630
Bme1390I	CCNGG	2 cut(s)	294, 312
Bme18I	GGWCC	2 cut(s)	17, 602
BmeRI	GACNNNNNGTC	1 cut(s)	460
BmgT120I	GGNCC	2 cut(s)	17, 602
BmiI	GGNNCC	2 cut(s)	18, 118
BmrFI	CCNGG	2 cut(s)	294, 312
BmsI	GCATC	2 cut(s)	288, 364
Bpu14I	TTCGAA	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	440
BseBI	CCWGG	2 cut(s)	294, 312
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	2 cut(s)	148, 244
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	440
BseMII	CTCAG	2 cut(s)	62, 112
BseNI	ACTGG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	175, 615
Bsh1236I	CGCG	2 cut(s)	27, 591
BshFI	GGCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	3 cut(s)	140, 447, 587
BsmBI	CGTCTC	1 cut(s)	587
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	5 cut(s)	49, 67, 116, 157, 576
Bsp68I	TCGCGA	1 cut(s)	591
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	2 cut(s)	63, 111
BspFNI	CGCG	2 cut(s)	27, 591
BspLI	GGNNCC	2 cut(s)	18, 118
BspPI	GGATC	2 cut(s)	111, 124
BspT104I	TTCGAA	1 cut(s)	435
BspTI	CTTAAG	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	5 cut(s)	49, 67, 116, 157, 576
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	294, 312
Bst4CI	ACNGT	2 cut(s)	38, 348
BstAFI	CTTAAG	1 cut(s)	304
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	71, 98
BstF5I	GGATG	2 cut(s)	148, 244
BstFNI	CGCG	2 cut(s)	27, 591
BstKTI	GATC	5 cut(s)	52, 70, 119, 160, 579
BstMAI	GTCTC	3 cut(s)	140, 447, 587
BstMBI	GATC	5 cut(s)	49, 67, 116, 157, 576
BstNI	CCWGG	2 cut(s)	294, 312
BstSCI	CCNGG	2 cut(s)	292, 310
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	2 cut(s)	27, 591
BstV1I	GCAGC	2 cut(s)	175, 615
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	148, 244
BtuMI	TCGCGA	1 cut(s)	591
Cac8I	GCNNGC	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	17, 602
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	23, 536
CviAII	CATG	1 cut(s)	194
CviQI	GTAC	2 cut(s)	23, 536
DdeI	CTNAG	2 cut(s)	71, 98
DpnI	GATC	5 cut(s)	51, 69, 118, 159, 578
DpnII	GATC	5 cut(s)	49, 67, 116, 157, 576
DriI	GACNNNNNGTC	1 cut(s)	460
Eam1105I	GACNNNNNGTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	120
Eco147I	AGGCCT	1 cut(s)	427
Eco47I	GGWCC	2 cut(s)	17, 602
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	2 cut(s)	292, 310
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	1 cut(s)	197
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	189, 629
FokI	GGATG	2 cut(s)	155, 231
Fsp4HI	GCNGC	2 cut(s)	189, 629
GluI	GCNGC	2 cut(s)	189, 629
HaeIII	GGCC	1 cut(s)	427
Hin1II	CATG	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	80
HindII	GTYRAC	1 cut(s)	80
HindIII	AAGCTT	3 cut(s)	287, 356, 660
HphI	GGTGA	2 cut(s)	326, 634
Hpy166II	GTNNAC	3 cut(s)	80, 465, 489
Hpy188I	TCNGA	4 cut(s)	34, 72, 168, 637
Hpy188III	TCNNGA	3 cut(s)	452, 590, 623
Hpy8I	GTNNAC	3 cut(s)	80, 465, 489
HpyAV	CCTTC	2 cut(s)	5, 655
HpyCH4III	ACNGT	2 cut(s)	38, 348
HpyCH4IV	ACGT	2 cut(s)	42, 596
HpyCH4V	TGCA	3 cut(s)	265, 279, 489
HpyF3I	CTNAG	2 cut(s)	71, 98
HpySE526I	ACGT	2 cut(s)	42, 596
Hsp92II	CATG	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	49, 67, 116, 157, 576
Lsp1109I	GCAGC	2 cut(s)	175, 615
LweI	GCATC	2 cut(s)	288, 364
MabI	ACCWGGT	1 cut(s)	310
MaeII	ACGT	2 cut(s)	42, 596
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	5 cut(s)	51, 69, 118, 159, 578
MboI	GATC	5 cut(s)	49, 67, 116, 157, 576
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	4 cut(s)	274, 317, 431, 551
MluI	ACGCGT	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	105, 195, 258, 345, 388, 417
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	2 cut(s)	285, 305
MslI	CAYNNNNRTG	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	304
MspR9I	CCNGG	2 cut(s)	294, 312
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	2 cut(s)	294, 312
MvnI	CGCG	2 cut(s)	27, 591
NdeII	GATC	5 cut(s)	49, 67, 116, 157, 576
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	18, 118
NruI	TCGCGA	1 cut(s)	591
NspV	TTCGAA	1 cut(s)	435
PceI	AGGCCT	1 cut(s)	427
PctI	GAATGC	1 cut(s)	410
PdmI	GAANNNNTTC	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	190, 630
PpuMI	RGGWCCY	1 cut(s)	17
Psp1406I	AACGTT	1 cut(s)	42
Psp5II	RGGWCCY	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	292, 310
PspGI	CCWGG	2 cut(s)	292, 310
PspN4I	GGNNCC	2 cut(s)	18, 118
PspPI	GGNCC	2 cut(s)	17, 602
PspPPI	RGGWCCY	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	116
RruI	TCGCGA	1 cut(s)	591
RsaI	GTAC	2 cut(s)	24, 537
RsaNI	GTAC	2 cut(s)	23, 536
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	285, 305
SatI	GCNGC	2 cut(s)	189, 629
Sau3AI	GATC	5 cut(s)	49, 67, 116, 157, 576
Sau96I	GGNCC	2 cut(s)	17, 602
ScrFI	CCNGG	2 cut(s)	294, 312
SduI	GDGCHC	1 cut(s)	491
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	288, 364
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	2 cut(s)	17, 602
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	4 cut(s)	274, 317, 431, 551
SseBI	AGGCCT	1 cut(s)	427
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	292, 310
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	38, 348
TaiI	ACGT	2 cut(s)	45, 599
TaqI	TCGA	4 cut(s)	231, 350, 435, 451
TasI	AATT	4 cut(s)	274, 317, 431, 551
Tru1I	TTAA	2 cut(s)	285, 305
Tru9I	TTAA	2 cut(s)	285, 305
TseI	GCWGC	2 cut(s)	188, 628
TspDTI	ATGAA	1 cut(s)	520
Vha464I	CTTAAG	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	17, 602
XapI	RAATTY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.