Rorug02G0411600

Protein of unknown function (DUF1666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011436
Physical Location & Seq
Forward (+)
52776613 .. 52781416
4804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0411600.1

Sequence Viewer

Length: 1011 bp
ATGCAAAAGATGGAGGAGGCATGTCCTCAACTTCTGGATTTGATTCCCAAAGAAAGAGAGTGGCTTGTGAGCAAAGATGAGAGCCATGGCTCTTCAGAAGAGAAGAAATTGGAGCTAAGGCTTGGTCCTCCAGGTCAAGACTGGTCAAATCTGAGAGACAACACCTCCAGAGGCCACAAAGAAAGAGATGAGTCTCTTCTTTCTCTTGGGTACTTCTACAACAACAGCAGCAGCAATGGAAACCAAACCCACCATTTTGCTTCCTCAGAGAGAAAGACTGTTCTGCCCTCTCCATGGTCTTCTTCTCCCTCAGGGTACCACCACAACCAGACAAAAGGTCCTTCCTTTCTTCAGTTCTCACCAAGCTCTCAGAGCCTGCCTGTCACCCAGAAGGCGTCACATCCCTGTTGCACTAAAGCGGTAGACTTGCAGAGCGCAGAGAAGAAGAAAGCTTCTGCAAATCCAGCTGTGACCAACAACACTTCTCAGAAAAGAACTGCTCCTGCTCCAGTCGTGGGTTGGCCTCCAATTCGATCTTTTCGGAAGAATCTTGCGAGCACCAGCTCTTCAAAACCAGCACCTGAGTCACAAAATGTAGCCCCTAGCAAGGTTTCTAATGTTAAACCAGTCGAAACCAGCGGAAAAGGCATGTTTGTGAAAATCAATATGGATGGAGTCCCCATTGGACGAAAAGTAGACCTCAGTGCTTATGCCAGCTACGAAAAGCTCTCCTCCGCTGTTGATGAACTCTTCCGTGGGCTCCTTGCAGCTCAAAGAGATTCTTGTGCTGGTGGAATCAAGAACAAGATAGAAGAAGAGAAAGAAATTACAGGTTTATTGGATGGAAGTGGAGAATATACTCTCGTATATGAAGATAATGAGGGTGACAGGATGCTTGTTGGGGATGTCCCATGGCACATGTTTGTGTCTACTGTGAAGAGGTTGCGTGTGCTCAAGAGCTCTGAACTTTCTGCACTTAGTATTCGCAGCGGTAAAGAACTGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1666

Protein Analysis

336

Amino Acids

36.89

Weight (kDa)

8.97

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 37 - 328 2.3e-69 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011436)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20260
fragaria_vesca FvH4_6g36930 FvH4_6g36930 FvH4_6g36930
malus_domestica MD09G1165600.v1.1 MD17G1162200.v1.1
prunus_persica Prupe.3G023200_v2.0.a1
pyrus_communis pycom09g08290 pycom17g15530
rosa_chinensis RchiOBHm_Chr2g0149351
rosa_laevigata RLG00000020395
rosa_roxburghii Rroxscaffold_2G00098170
rosa_rugosa Rorug02G0411600 Rorug02G0411700 Rorug02G0411800
rosa_samantha Rh2AG471500 Rh2BG483800 Rh2CG457500 Rh2DG492800
rosa_wichuraiana Rw2G038370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 3 cut(s) 423, 696, 929
AciI CCGC 4 cut(s) 419, 639, 735, 990
AcuI CTGAAG 2 cut(s) 78, 335
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 2 cut(s) 212, 317
AfiI CCNNNNNNNGG 3 cut(s) 294, 515, 607
AflIII ACRYGT 1 cut(s) 918
AgsI TTSAA 1 cut(s) 570
AhdI GACNNNNNGTC 1 cut(s) 336
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 9 cut(s) 115, 366, 452, 467, 564, 717, 727, 770, 960
AluI AGCT 9 cut(s) 115, 366, 452, 467, 564, 717, 727, 770, 960
Alw21I GWGCWC 3 cut(s) 560, 954, 962
Alw26I GTCTC 2 cut(s) 150, 198
AlwNI CAGNNNCTG 2 cut(s) 376, 581
AoxI GGCC 2 cut(s) 172, 521
ApeKI GCWGC 4 cut(s) 228, 231, 767, 987
Asp718I GGTACC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 437
AspS9I GGNCC 2 cut(s) 125, 338
AsuHPI GGTGA 3 cut(s) 351, 376, 896
AvaII GGWCC 2 cut(s) 125, 338
AxyI CCTNAGG 1 cut(s) 310
BanI GGYRCC 1 cut(s) 315
BanII GRGCYC 2 cut(s) 762, 962
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 3 cut(s) 560, 954, 962
BbvI GCAGC 4 cut(s) 240, 243, 779, 999
BccI CCATC 3 cut(s) 4, 665, 836
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 150, 198
BfaI CTAG 1 cut(s) 603
BisI GCNGC 4 cut(s) 229, 232, 768, 988
BlsI GCNGC 4 cut(s) 230, 233, 769, 989
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 125, 338
BmeRI GACNNNNNGTC 1 cut(s) 336
BmgT120I GGNCC 2 cut(s) 125, 338
BmiI GGNNCC 2 cut(s) 317, 761
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 1 cut(s) 882
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 3 cut(s) 114, 151, 492
Bpu10I CCTNAGC 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 938
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 4 cut(s) 85, 293, 754, 911
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 515, 607
Bse1I ACTGG 3 cut(s) 146, 509, 626
Bse21I CCTNAGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 4 cut(s) 85, 293, 754, 911
BseGI GGATG 5 cut(s) 400, 676, 847, 897, 910
BseLI CCNNNNNNNGG 3 cut(s) 294, 515, 607
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 7 cut(s) 143, 279, 324, 383, 500, 573, 715
BseNI ACTGG 3 cut(s) 146, 509, 626
BseRI GAGGAG 2 cut(s) 29, 721
BseXI GCAGC 4 cut(s) 240, 243, 779, 999
BsgI GTGCAG 1 cut(s) 957
BshFI GGCC 2 cut(s) 174, 523
BshNI GGYRCC 1 cut(s) 315
BsiHKAI GWGCWC 3 cut(s) 560, 954, 962
BslFI GGGAC 2 cut(s) 662, 893
BslI CCNNNNNNNGG 3 cut(s) 294, 515, 607
BsmAI GTCTC 2 cut(s) 150, 198
BsmFI GGGAC 2 cut(s) 662, 893
BsnI GGCC 2 cut(s) 174, 523
Bsp1286I GDGCHC 4 cut(s) 560, 762, 954, 962
Bsp143I GATC 1 cut(s) 533
Bsp19I CCATGG 3 cut(s) 85, 293, 911
BspACI CCGC 4 cut(s) 419, 639, 735, 990
BspANI GGCC 2 cut(s) 174, 523
BspCNI CTCAG 7 cut(s) 144, 278, 323, 382, 499, 574, 714
BspLI GGNNCC 2 cut(s) 317, 761
BspQI GCTCTTC 2 cut(s) 97, 571
BspT107I GGYRCC 1 cut(s) 315
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 3 cut(s) 146, 509, 626
BssECI CCNNGG 4 cut(s) 85, 293, 754, 911
BssMI GATC 1 cut(s) 533
BssNI GRCGYC 1 cut(s) 395
BssT1I CCWWGG 3 cut(s) 85, 293, 911
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 2 cut(s) 280, 934
Bst6I CTCTTC 7 cut(s) 93, 97, 201, 571, 755, 810, 932
BstACI GRCGYC 1 cut(s) 395
BstC8I GCNNGC 3 cut(s) 377, 556, 715
BstDEI CTNAG 9 cut(s) 116, 152, 265, 310, 369, 486, 582, 701, 977
BstDSI CCRYGG 4 cut(s) 85, 293, 754, 911
BstF5I GGATG 5 cut(s) 400, 676, 847, 897, 910
BstHHI GCGC 1 cut(s) 437
BstKTI GATC 1 cut(s) 536
BstMAI GTCTC 2 cut(s) 150, 198
BstMBI GATC 1 cut(s) 533
BstMWI GCNNNNNNNGC 3 cut(s) 372, 464, 645
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 3 cut(s) 24, 652, 922
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 4 cut(s) 240, 243, 779, 999
BstV2I GAAGAC 1 cut(s) 291
Bsu36I CCTNAGG 1 cut(s) 310
BsuRI GGCC 2 cut(s) 174, 523
BtgI CCRYGG 4 cut(s) 85, 293, 754, 911
BtsCI GGATG 5 cut(s) 400, 676, 847, 897, 910
BtsIMutI CAGTG 1 cut(s) 709
Cac8I GCNNGC 3 cut(s) 377, 556, 715
CaiI CAGNNNCTG 2 cut(s) 376, 581
CfoI GCGC 1 cut(s) 437
Cfr13I GGNCC 2 cut(s) 125, 338
CseI GACGC 1 cut(s) 384
Csp6I GTAC 2 cut(s) 211, 316
CviAII CATG 6 cut(s) 21, 86, 294, 649, 912, 919
CviQI GTAC 2 cut(s) 211, 316
DdeI CTNAG 9 cut(s) 116, 152, 265, 310, 369, 486, 582, 701, 977
DpnI GATC 1 cut(s) 535
DpnII GATC 1 cut(s) 533
DriI GACNNNNNGTC 1 cut(s) 336
Eam1104I CTCTTC 7 cut(s) 93, 97, 201, 571, 755, 810, 932
Eam1105I GACNNNNNGTC 1 cut(s) 336
EarI CTCTTC 7 cut(s) 93, 97, 201, 571, 755, 810, 932
Ecl136II GAGCTC 1 cut(s) 960
Eco130I CCWWGG 3 cut(s) 85, 293, 911
Eco24I GRGCYC 2 cut(s) 762, 962
Eco47I GGWCC 2 cut(s) 125, 338
Eco53kI GAGCTC 1 cut(s) 960
Eco57I CTGAAG 2 cut(s) 78, 335
Eco81I CCTNAGG 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 960
EcoO109I RGGNCCY 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 3 cut(s) 85, 293, 911
EcoT38I GRGCYC 2 cut(s) 762, 962
ErhI CCWWGG 3 cut(s) 85, 293, 911
FaeI CATG 6 cut(s) 24, 89, 297, 652, 915, 922
FalI AAGNNNNNCTT 2 cut(s) 766, 798
FaqI GGGAC 2 cut(s) 662, 893
FatI CATG 6 cut(s) 20, 85, 293, 648, 911, 918
FblI GTMKAC 3 cut(s) 423, 696, 929
Fnu4HI GCNGC 4 cut(s) 229, 232, 768, 988
FokI GGATG 5 cut(s) 387, 683, 854, 904, 917
FriOI GRGCYC 2 cut(s) 762, 962
Fsp4HI GCNGC 4 cut(s) 229, 232, 768, 988
FspBI CTAG 1 cut(s) 603
GlaI GCGC 1 cut(s) 436
GluI GCNGC 4 cut(s) 229, 232, 768, 988
GsuI CTGGAG 3 cut(s) 114, 151, 492
HaeIII GGCC 2 cut(s) 174, 523
HgaI GACGC 1 cut(s) 384
HhaI GCGC 1 cut(s) 437
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 6 cut(s) 24, 89, 297, 652, 915, 922
Hin6I GCGC 1 cut(s) 435
HinP1I GCGC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 450
HinfI GANTC 7 cut(s) 43, 191, 547, 584, 675, 779, 795
HphI GGTGA 3 cut(s) 351, 376, 896
Hpy166II GTNNAC 3 cut(s) 424, 697, 930
Hpy188I TCNGA 7 cut(s) 97, 153, 268, 372, 489, 543, 964
Hpy188III TCNNGA 5 cut(s) 35, 137, 168, 799, 955
Hpy8I GTNNAC 3 cut(s) 424, 697, 930
HpyAV CCTTC 2 cut(s) 351, 385
HpyCH4III ACNGT 2 cut(s) 280, 934
HpyCH4V TGCA 6 cut(s) 4, 411, 430, 458, 767, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 372, 464, 645
HpyF3I CTNAG 9 cut(s) 116, 152, 265, 310, 369, 486, 582, 701, 977
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 6 cut(s) 24, 89, 297, 652, 915, 922
HspAI GCGC 1 cut(s) 435
KpnI GGTACC 1 cut(s) 319
Kzo9I GATC 1 cut(s) 533
LguI GCTCTTC 2 cut(s) 97, 571
LmnI GCTCC 4 cut(s) 112, 505, 511, 765
Lsp1109I GCAGC 4 cut(s) 240, 243, 779, 999
LweI GCATC 1 cut(s) 882
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 5 cut(s) 382, 396, 469, 585, 884
MalI GATC 1 cut(s) 535
MboI GATC 1 cut(s) 533
MhlI GDGCHC 4 cut(s) 560, 762, 954, 962
MluCI AATT 3 cut(s) 107, 528, 825
MlyI GAGTC 3 cut(s) 200, 593, 684
MseI TTAA 1 cut(s) 621
MslI CAYNNNNRTG 2 cut(s) 653, 923
MspA1I CMGCKG 4 cut(s) 467, 639, 737, 990
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 372, 464, 645
NcoI CCATGG 3 cut(s) 85, 293, 911
NdeII GATC 1 cut(s) 533
NlaIII CATG 6 cut(s) 24, 89, 297, 652, 915, 922
NlaIV GGNNCC 2 cut(s) 317, 761
NmuCI GTSAC 5 cut(s) 382, 396, 469, 585, 884
NspI RCATGY 3 cut(s) 24, 652, 922
PciI ACATGT 1 cut(s) 918
PciSI GCTCTTC 2 cut(s) 97, 571
PfeI GAWTC 4 cut(s) 43, 547, 779, 795
PkrI GCNGC 4 cut(s) 230, 233, 769, 989
PleI GAGTC 3 cut(s) 199, 592, 683
PpsI GAGTC 3 cut(s) 199, 592, 683
PpuMI RGGWCCY 1 cut(s) 338
PscI ACATGT 1 cut(s) 918
Psp124BI GAGCTC 1 cut(s) 962
Psp5II RGGWCCY 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 317, 761
PspPI GGNCC 2 cut(s) 125, 338
PspPPI RGGWCCY 1 cut(s) 338
PstNI CAGNNNCTG 2 cut(s) 376, 581
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 2 cut(s) 212, 317
RsaNI GTAC 2 cut(s) 211, 316
RseI CAYNNNNRTG 2 cut(s) 653, 923
SacI GAGCTC 1 cut(s) 962
SapI GCTCTTC 2 cut(s) 97, 571
SaqAI TTAA 1 cut(s) 621
SatI GCNGC 4 cut(s) 229, 232, 768, 988
Sau3AI GATC 1 cut(s) 533
Sau96I GGNCC 2 cut(s) 125, 338
SchI GAGTC 3 cut(s) 200, 593, 684
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 4 cut(s) 560, 762, 954, 962
SfaNI GCATC 1 cut(s) 882
SinI GGWCC 2 cut(s) 125, 338
SmiMI CAYNNNNRTG 2 cut(s) 653, 923
SmlI CTYRAG 1 cut(s) 953
SmoI CTYRAG 1 cut(s) 953
Sse9I AATT 3 cut(s) 107, 528, 825
SsiI CCGC 4 cut(s) 419, 639, 735, 990
SspMI CTAG 1 cut(s) 603
SstI GAGCTC 1 cut(s) 962
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 3 cut(s) 85, 293, 911
TaaI ACNGT 2 cut(s) 280, 934
TaqI TCGA 2 cut(s) 532, 630
TasI AATT 3 cut(s) 107, 528, 825
TfiI GAWTC 4 cut(s) 43, 547, 779, 795
Tru1I TTAA 1 cut(s) 621
Tru9I TTAA 1 cut(s) 621
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 5 cut(s) 382, 396, 469, 585, 884
TseI GCWGC 4 cut(s) 228, 231, 767, 987
Tsp45I GTSAC 5 cut(s) 382, 396, 469, 585, 884
TspDTI ATGAA 2 cut(s) 759, 885
TspGWI ACGGA 1 cut(s) 743
TspRI CASTG 1 cut(s) 709
VpaK11BI GGWCC 2 cut(s) 125, 338
XceI RCATGY 3 cut(s) 24, 652, 922
XcmI CCANNNNNNNNNTGG 2 cut(s) 138, 516
XmiI GTMKAC 3 cut(s) 423, 696, 929
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.