Rw2G038370

Protein of unknown function (DUF1666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011436
Physical Location & Seq
Reverse (-)
63322073 .. 63326528
4456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G038370.1

Sequence Viewer

Length: 894 bp
ATGTTGTTCTTTGAACGGATGAGCACACAGCAGCTTAAGGAAGGCATCCAAACCCCTACAACTCCATCACCAAGACCTGCATCTAAGAAGCTTTCCTCTCCTTTTCGCTGTCTCTCTTTGAAGAAGATTGAAGAACCTAATGACGAGACTGAGCATCTCCAGCAGCCAGAGATTGACCCTTATCATGATATTGAGACATCATATGTAGCTCAAGTTTGCTTGTCTTGGGAGGCACTGCACTGTCAATACACTCAACTGAATCAGCTAATCTCATGCCAACCTGAAAATCCCACCCCCTACAACCACAGTGCTCAACAGTTTCAACAATTTCAGGTTTTATTACAAAGGTTTATTGAAAATGAACCTTTTGAGGAGGGTCTCAGGCCAGAAATTTATGCTCGCACTCAGAGAGTTCTGCCTAAACTACTCCGGGTCCCTAATATACAAGGTCCAATTAATAAAGGGAAAGAAGAAGAAGAATCAGATTCCTTGATTCTTGCCCCTGATCTGATCAAGATTATTGAAACCTCGATCCTCACATTTCTACTTTTCCTGAAGATGGACAAGAAAAAAACAAGTGCTGGTCTTAGCTTATTTGGAAATCAAAACCATGCTACCCCACTTCAGCAGATTCAAACTTCACTGGATAAGAAATGGATGAAATTAAAGGAACTTCGTAAAAAGAGGAAAAGTCGGAAGAAGTCATGGCCGCAATCACAAGAAGATGTTCAGCTGTTGTTTAGCCTCACTGATGCAAAGGTTTTGTCAAGGGTTCTCCGGATGGGAAGAATTAGTAAAGAGCAGCTATTTTGGTGCGAGGAAAAGATGAAAAAGCTAGATTTGGTGGATGGCAAGTTGTGGAGAGACCCCTCTCCCACCCTTTTCCCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1666

Protein Analysis

297

Amino Acids

34.64

Weight (kDa)

8.89

Isoelectric Point (pI)

60.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1666 PF07891 62 - 296 1.3e-88 Protein of unknown function (DUF1666)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011436)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20260
fragaria_vesca FvH4_6g36930 FvH4_6g36930 FvH4_6g36930
malus_domestica MD09G1165600.v1.1 MD17G1162200.v1.1
prunus_persica Prupe.3G023200_v2.0.a1
pyrus_communis pycom09g08290 pycom17g15530
rosa_chinensis RchiOBHm_Chr2g0149351
rosa_laevigata RLG00000020395
rosa_roxburghii Rroxscaffold_2G00098170
rosa_rugosa Rorug02G0411600 Rorug02G0411700 Rorug02G0411800
rosa_samantha Rh2AG471500 Rh2BG483800 Rh2CG457500 Rh2DG492800
rosa_wichuraiana Rw2G038370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 85
AccIII TCCGGA 1 cut(s) 777
AciI CCGC 1 cut(s) 710
AclWI GGATC 1 cut(s) 526
AcoI YGGCCR 1 cut(s) 707
AcsI RAATTY 1 cut(s) 390
AcuI CTGAAG 2 cut(s) 575, 608
AfiI CCNNNNNNNGG 1 cut(s) 559
AflII CTTAAG 1 cut(s) 35
AgsI TTSAA 7 cut(s) 14, 121, 131, 323, 356, 524, 635
AluBI AGCT 8 cut(s) 34, 91, 209, 265, 591, 733, 805, 835
AluI AGCT 8 cut(s) 34, 91, 209, 265, 591, 733, 805, 835
Alw21I GWGCWC 2 cut(s) 26, 313
Alw26I GTCTC 5 cut(s) 116, 140, 188, 383, 858
AlwI GGATC 1 cut(s) 526
Aor13HI TCCGGA 1 cut(s) 777
AoxI GGCC 2 cut(s) 383, 707
ApeKI GCWGC 3 cut(s) 31, 163, 802
ApoI RAATTY 1 cut(s) 390
ArsI GACNNNNNNTTYG 2 cut(s) 749, 781
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 726
AspS9I GGNCC 2 cut(s) 433, 449
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 60
AvaII GGWCC 2 cut(s) 433, 449
Bbv12I GWGCWC 2 cut(s) 26, 313
BbvI GCAGC 3 cut(s) 43, 175, 814
BccI CCATC 4 cut(s) 73, 553, 775, 842
BclI TGATCA 1 cut(s) 510
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 5 cut(s) 116, 140, 188, 383, 858
BfaI CTAG 1 cut(s) 836
BfrI CTTAAG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 85
BisI GCNGC 4 cut(s) 32, 164, 710, 803
BlsI GCNGC 4 cut(s) 33, 165, 711, 804
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 2 cut(s) 433, 449
BmgT120I GGNCC 2 cut(s) 433, 449
BmiI GGNNCC 2 cut(s) 434, 435
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 4 cut(s) 54, 89, 163, 742
BpmI CTGGAG 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 431
BsaI GGTCTC 2 cut(s) 383, 858
BsaWI WCCGGW 1 cut(s) 777
Bsc4I CCNNNNNNNGG 1 cut(s) 559
Bse1I ACTGG 1 cut(s) 648
BseAI TCCGGA 1 cut(s) 777
BseGI GGATG 5 cut(s) 24, 45, 663, 786, 853
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 3 cut(s) 141, 394, 419
BseNI ACTGG 1 cut(s) 648
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 3 cut(s) 43, 175, 814
BsgI GTGCAG 1 cut(s) 221
BshFI GGCC 2 cut(s) 385, 709
BsiHKAI GWGCWC 2 cut(s) 26, 313
BsiSI CCGG 2 cut(s) 430, 778
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 5 cut(s) 116, 140, 188, 383, 858
BsmFI GGGAC 1 cut(s) 419
BsnI GGCC 2 cut(s) 385, 709
Bso31I GGTCTC 2 cut(s) 383, 858
Bsp1286I GDGCHC 2 cut(s) 26, 313
Bsp13I TCCGGA 1 cut(s) 777
Bsp143I GATC 3 cut(s) 505, 510, 531
BspACI CCGC 1 cut(s) 710
BspANI GGCC 2 cut(s) 385, 709
BspCNI CTCAG 3 cut(s) 142, 393, 418
BspEI TCCGGA 1 cut(s) 777
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 434, 435
BspMI ACCTGC 1 cut(s) 85
BspPI GGATC 1 cut(s) 526
BspTI CTTAAG 1 cut(s) 35
BspTNI GGTCTC 2 cut(s) 383, 858
BsrI ACTGG 1 cut(s) 648
BssMI GATC 3 cut(s) 505, 510, 531
Bst4CI ACNGT 3 cut(s) 242, 308, 318
BstAFI CTTAAG 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 400
BstDEI CTNAG 5 cut(s) 84, 150, 380, 405, 587
BstF5I GGATG 5 cut(s) 24, 45, 663, 786, 853
BstKTI GATC 3 cut(s) 508, 513, 534
BstMAI GTCTC 5 cut(s) 116, 140, 188, 383, 858
BstMBI GATC 3 cut(s) 505, 510, 531
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 43, 175, 814
BsuRI GGCC 2 cut(s) 385, 709
BtsCI GGATG 5 cut(s) 24, 45, 663, 786, 853
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 5 cut(s) 233, 238, 313, 641, 747
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 400
CciI TCATGA 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 433, 449
CviAII CATG 4 cut(s) 185, 273, 611, 705
DdeI CTNAG 5 cut(s) 84, 150, 380, 405, 587
DpnI GATC 3 cut(s) 507, 512, 533
DpnII GATC 3 cut(s) 505, 510, 531
EaeI YGGCCR 1 cut(s) 707
Eco31I GGTCTC 2 cut(s) 383, 858
Eco47I GGWCC 2 cut(s) 433, 449
Eco57I CTGAAG 2 cut(s) 575, 608
EcoO109I RGGNCCY 1 cut(s) 433
FaeI CATG 4 cut(s) 188, 276, 614, 708
FaiI YATR 8 cut(s) 186, 202, 204, 274, 396, 443, 612, 706
FaqI GGGAC 1 cut(s) 419
FatI CATG 4 cut(s) 184, 272, 610, 704
FauNDI CATATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 32, 164, 710, 803
FokI GGATG 5 cut(s) 31, 32, 670, 793, 860
Fsp4HI GCNGC 4 cut(s) 32, 164, 710, 803
FspBI CTAG 1 cut(s) 836
GluI GCNGC 4 cut(s) 32, 164, 710, 803
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 385, 709
HapII CCGG 2 cut(s) 430, 778
Hin1II CATG 4 cut(s) 188, 276, 614, 708
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 5 cut(s) 259, 479, 485, 493, 631
HpaII CCGG 2 cut(s) 430, 778
HphI GGTGA 1 cut(s) 60
Hpy188I TCNGA 4 cut(s) 408, 484, 510, 696
Hpy188III TCNNGA 4 cut(s) 185, 514, 553, 778
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 3 cut(s) 242, 308, 318
HpyCH4V TGCA 3 cut(s) 80, 238, 755
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 5 cut(s) 84, 150, 380, 405, 587
Hsp92II CATG 4 cut(s) 188, 276, 614, 708
KflI GGGWCCC 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 777
Ksp22I TGATCA 1 cut(s) 510
Kzo9I GATC 3 cut(s) 505, 510, 531
Lsp1109I GCAGC 3 cut(s) 43, 175, 814
LweI GCATC 4 cut(s) 54, 89, 163, 742
MaeI CTAG 1 cut(s) 836
MalI GATC 3 cut(s) 507, 512, 533
MboI GATC 3 cut(s) 505, 510, 531
MhlI GDGCHC 2 cut(s) 26, 313
MluCI AATT 5 cut(s) 326, 390, 453, 662, 789
MmeI TCCRAC 1 cut(s) 674
MroI TCCGGA 1 cut(s) 777
MroXI GAANNNNTTC 1 cut(s) 726
MseI TTAA 4 cut(s) 36, 456, 665, 892
MspA1I CMGCKG 1 cut(s) 733
MspCI CTTAAG 1 cut(s) 35
MspI CCGG 2 cut(s) 430, 778
MspR9I CCNGG 1 cut(s) 431
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 431
NdeI CATATG 1 cut(s) 202
NdeII GATC 3 cut(s) 505, 510, 531
NlaIII CATG 4 cut(s) 188, 276, 614, 708
NlaIV GGNNCC 2 cut(s) 434, 435
PagI TCATGA 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 5 cut(s) 259, 479, 485, 493, 631
PkrI GCNGC 4 cut(s) 33, 165, 711, 804
PpuMI RGGWCCY 1 cut(s) 433
PshBI ATTAAT 1 cut(s) 456
Psp5II RGGWCCY 1 cut(s) 433
PspN4I GGNNCC 2 cut(s) 434, 435
PspPI GGNCC 2 cut(s) 433, 449
PspPPI RGGWCCY 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 733
SaqAI TTAA 4 cut(s) 36, 456, 665, 892
SatI GCNGC 4 cut(s) 32, 164, 710, 803
Sau3AI GATC 3 cut(s) 505, 510, 531
Sau96I GGNCC 2 cut(s) 433, 449
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 2 cut(s) 26, 313
SfaNI GCATC 4 cut(s) 54, 89, 163, 742
SinI GGWCC 2 cut(s) 433, 449
SmlI CTYRAG 2 cut(s) 35, 210
SmoI CTYRAG 2 cut(s) 35, 210
Sse9I AATT 5 cut(s) 326, 390, 453, 662, 789
SsiI CCGC 1 cut(s) 710
SspMI CTAG 1 cut(s) 836
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 3 cut(s) 242, 308, 318
TaqI TCGA 1 cut(s) 530
TasI AATT 5 cut(s) 326, 390, 453, 662, 789
TauI GCSGC 1 cut(s) 712
TfiI GAWTC 5 cut(s) 259, 479, 485, 493, 631
Tru1I TTAA 4 cut(s) 36, 456, 665, 892
Tru9I TTAA 4 cut(s) 36, 456, 665, 892
TscAI CASTG 5 cut(s) 240, 245, 313, 648, 754
TseI GCWGC 3 cut(s) 31, 163, 802
TspDTI ATGAA 3 cut(s) 375, 674, 842
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 5 cut(s) 240, 245, 313, 648, 754
Vha464I CTTAAG 1 cut(s) 35
VpaK11BI GGWCC 2 cut(s) 433, 449
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 1 cut(s) 390
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 1 cut(s) 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.