Rorug02G0411800

Protein of unknown function (DUF1666)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011436
Physical Location & Seq
Reverse (-)
52792327 .. 52793514
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0411800.1

Sequence Viewer

Length: 630 bp
ATGGACGGGTTCGTGCGGGCTTTTACCGTGCGGGTTTCGGGCGGGTTTGCGGCTCTACTGTGCAAAATTGCGGCTTTGAGATCGTTTTCTCTGGACAGATTACACTATTGGAGAGAAGCTGCATCTGGAATGAGCAGCTTGGCTCATTTTCTCGCTAAGGATACAGTTGATCATTTTAATACAGTGATCAAACCTTTGGTGTATCTGTCCATGTTCTACTTTTTCACCGACCCAAGATCTAGCTTAGCGGATAATTACATTGTTCTACTCTGCCTTGTGTACTGCGTAACTGGTATAGCCTATGCATTAGCAATCTTCTTTGACCAAGGTGCAGCCCAACTGTTATCAGTCCTTCTTCCCGTTGTTTTGACTCTTACAGCAACACAGCCTCAGGATAGTGAAATTCTAAAGATTTTGGCCAATTTATGCTATCCTAAGTGGGCTTTGGAGGCATTTGTGATTGCAAATGCTGAAAGCTACTCAGGGGTATGGCTAATAACTCGTTGCGGGACGCTTTTGAAAAGTGGCTATGATCTTCATGATTGGAATCTTTGTATAACTGTCTTGATCATCACTGGTTTAGTTAGTCGTGTGATCGCATTCTTTTGTATGCTGATCTTTCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1666

Protein Analysis

209

Amino Acids

23.29

Weight (kDa)

7.58

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC2_membrane_7 PF19055 18 - 209 6.7e-108 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011436)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20260
fragaria_vesca FvH4_6g36930 FvH4_6g36930 FvH4_6g36930
malus_domestica MD09G1165600.v1.1 MD17G1162200.v1.1
prunus_persica Prupe.3G023200_v2.0.a1
pyrus_communis pycom09g08290 pycom17g15530
rosa_chinensis RchiOBHm_Chr2g0149351
rosa_laevigata RLG00000020395
rosa_roxburghii Rroxscaffold_2G00098170
rosa_rugosa Rorug02G0411600 Rorug02G0411700 Rorug02G0411800
rosa_samantha Rh2AG471500 Rh2BG483800 Rh2CG457500 Rh2DG492800
rosa_wichuraiana Rw2G038370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 16, 31, 42, 50, 71, 248, 507
AcoI YGGCCR 1 cut(s) 417
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 1 cut(s) 520
AluBI AGCT 4 cut(s) 119, 138, 243, 477
AluI AGCT 4 cut(s) 119, 138, 243, 477
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 3 cut(s) 119, 135, 332
ApoI RAATTY 1 cut(s) 402
AsuHPI GGTGA 1 cut(s) 217
AxyI CCTNAGG 1 cut(s) 390
BalI TGGCCA 1 cut(s) 419
BbvI GCAGC 3 cut(s) 106, 147, 344
BciVI GTATCC 1 cut(s) 154
BclI TGATCA 3 cut(s) 169, 186, 567
BfaI CTAG 1 cut(s) 240
BfuI GTATCC 1 cut(s) 154
BglII AGATCT 1 cut(s) 236
BisI GCNGC 5 cut(s) 51, 72, 120, 136, 333
BlpI GCTNAGC 1 cut(s) 244
BlsI GCNGC 5 cut(s) 52, 73, 121, 137, 334
BmsI GCATC 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 325
Bse1I ACTGG 2 cut(s) 295, 580
Bse21I CCTNAGG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 546
BseDI CCNNGG 1 cut(s) 325
BseJI GATNNNNATC 1 cut(s) 546
BseMII CTCAG 2 cut(s) 404, 495
BseNI ACTGG 2 cut(s) 295, 580
BseXI GCAGC 3 cut(s) 106, 147, 344
BsgI GTGCAG 1 cut(s) 351
BshFI GGCC 1 cut(s) 419
BslFI GGGAC 1 cut(s) 523
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 1 cut(s) 419
Bsp143I GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
Bsp1720I GCTNAGC 1 cut(s) 244
BspACI CCGC 7 cut(s) 16, 31, 42, 50, 71, 248, 507
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 2 cut(s) 403, 494
BspHI TCATGA 1 cut(s) 538
BsrI ACTGG 2 cut(s) 295, 580
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
BssT1I CCWWGG 1 cut(s) 325
Bst4CI ACNGT 6 cut(s) 28, 60, 166, 184, 342, 562
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 5 cut(s) 156, 244, 390, 435, 481
BstKTI GATC 8 cut(s) 83, 172, 189, 239, 535, 570, 597, 618
BstMBI GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 106, 147, 344
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
Bsu36I CCTNAGG 1 cut(s) 390
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 419
BtsIMutI CAGTG 2 cut(s) 189, 573
Cac8I GCNNGC 1 cut(s) 18
CciI TCATGA 1 cut(s) 538
CseI GACGC 1 cut(s) 520
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 211, 539
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 5 cut(s) 156, 244, 390, 435, 481
DpnI GATC 8 cut(s) 82, 171, 188, 238, 534, 569, 596, 617
DpnII GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
EaeI YGGCCR 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 325
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 325
FaeI CATG 2 cut(s) 214, 542
FaiI YATR 9 cut(s) 212, 296, 303, 427, 490, 531, 540, 557, 611
FaqI GGGAC 1 cut(s) 523
FatI CATG 2 cut(s) 210, 538
FauI CCCGC 4 cut(s) 9, 24, 35, 500
FbaI TGATCA 3 cut(s) 169, 186, 567
Fnu4HI GCNGC 5 cut(s) 51, 72, 120, 136, 333
Fsp4HI GCNGC 5 cut(s) 51, 72, 120, 136, 333
FspBI CTAG 1 cut(s) 240
GluI GCNGC 5 cut(s) 51, 72, 120, 136, 333
HaeIII GGCC 1 cut(s) 419
HgaI GACGC 1 cut(s) 520
Hin1II CATG 2 cut(s) 214, 542
HinfI GANTC 2 cut(s) 370, 547
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 624
Hpy188III TCNNGA 5 cut(s) 92, 126, 392, 539, 565
Hpy8I GTNNAC 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 362
HpyCH4III ACNGT 6 cut(s) 28, 60, 166, 184, 342, 562
HpyCH4V TGCA 5 cut(s) 63, 122, 305, 332, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 5 cut(s) 156, 244, 390, 435, 481
Hsp92II CATG 2 cut(s) 214, 542
Ksp22I TGATCA 3 cut(s) 169, 186, 567
Kzo9I GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
LpnPI CCDG 6 cut(s) 77, 111, 276, 377, 468, 561
Lsp1109I GCAGC 3 cut(s) 106, 147, 344
LweI GCATC 1 cut(s) 131
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 286
MalI GATC 8 cut(s) 82, 171, 188, 238, 534, 569, 596, 617
MboI GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
MboII GAAGA 3 cut(s) 307, 347, 527
MflI RGATCY 1 cut(s) 236
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 4 cut(s) 66, 253, 402, 421
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 2 cut(s) 399, 442
Mox20I TGGCCA 1 cut(s) 419
Mph1103I ATGCAT 1 cut(s) 307
MscI TGGCCA 1 cut(s) 419
MseI TTAA 1 cut(s) 177
Msp20I TGGCCA 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 599
MwoI GCNNNNNNNGC 1 cut(s) 449
NdeII GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
NlaIII CATG 2 cut(s) 214, 542
NsiI ATGCAT 1 cut(s) 307
PagI TCATGA 1 cut(s) 538
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 5 cut(s) 52, 73, 121, 137, 334
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PsuI RGATCY 1 cut(s) 236
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 5 cut(s) 51, 72, 120, 136, 333
Sau3AI GATC 8 cut(s) 80, 169, 186, 236, 532, 567, 594, 615
SchI GAGTC 1 cut(s) 364
SetI ASST 6 cut(s) 121, 140, 196, 245, 331, 479
SfaNI GCATC 1 cut(s) 131
Sse9I AATT 4 cut(s) 66, 253, 402, 421
SsiI CCGC 7 cut(s) 16, 31, 42, 50, 71, 248, 507
SspMI CTAG 1 cut(s) 240
StyI CCWWGG 1 cut(s) 325
TaaI ACNGT 6 cut(s) 28, 60, 166, 184, 342, 562
TasI AATT 4 cut(s) 66, 253, 402, 421
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 53, 74
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 2 cut(s) 189, 580
TseI GCWGC 3 cut(s) 119, 135, 332
TspDTI ATGAA 1 cut(s) 527
TspRI CASTG 2 cut(s) 189, 580
XapI RAATTY 1 cut(s) 402
XspI CTAG 1 cut(s) 240
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.