Rorug04G0125600

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
19901441 .. 19901647
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0125600.1

Sequence Viewer

Length: 207 bp
ATGGCACATGAACAACAAGAAAAGGCTCTGAAGAATGCATTCATCAGGGATCATAGTTATAACTTGGAAGAGAAGTATGTGAAACTCAGTGATATAAACCAGCGTTTCATTTCTGAGGAAAAGGAGCACAATGTGGGAGACCAAGACTCGGCAAACAAGTCATATTACAAGTTTCAGACCAAGAGGCCGTACCTATATGATCATTGA

Protein Analysis

68

Amino Acids

8.27

Weight (kDa)

6.4

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014328)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G32810 AT2G32810
fragaria_vesca FvH4_4g13490
malus_domestica MD13G1283100.v1.1
prunus_persica Prupe.1G160600_v2.0.a1 Prupe.1G160600_v2.0.a1
pyrus_communis pycom420g01190
rosa_chinensis RchiOBHm_Chr4g0414111
rosa_laevigata RLG00000008175
rosa_multiflora Rmu_sc0003264.1_g000008
rosa_roxburghii Rroxscaffold_5G00358040
rosa_rugosa Rorug04G0125600 Rorug04G0125700
rosa_samantha Rh4AG184200 Rh4BG183700 Rh4DG179600
rosa_wichuraiana Rw4G015680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AclWI GGATC 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 57
AoxI GGCC 1 cut(s) 185
Asp700I GAANNNNTTC 1 cut(s) 38
Bbv12I GWGCWC 1 cut(s) 129
BceAI ACGGC 1 cut(s) 172
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 1 cut(s) 132
BsaI GGTCTC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 100, 105
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 132
BsmI GAATGC 2 cut(s) 38, 40
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 49, 199
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 99, 106
BspPI GGATC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 132
BssMI GATC 2 cut(s) 49, 199
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 86, 114
BstKTI GATC 2 cut(s) 52, 202
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 49, 199
BsuRI GGCC 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 94
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 8
CviJI RGCY 2 cut(s) 26, 187
CviKI_1 RGCY 2 cut(s) 26, 187
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 86, 114
DpnI GATC 2 cut(s) 51, 201
DpnII GATC 2 cut(s) 49, 199
DraIII CACNNNGTG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 40
FaeI CATG 1 cut(s) 11
FaiI YATR 8 cut(s) 9, 54, 60, 78, 95, 163, 196, 198
FatI CATG 1 cut(s) 7
FbaI TGATCA 1 cut(s) 199
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 1 cut(s) 11
HinfI GANTC 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 30, 115, 177
HpyCH4V TGCA 1 cut(s) 38
HpyF3I CTNAG 2 cut(s) 86, 114
Hsp92II CATG 1 cut(s) 11
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 49, 199
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 2 cut(s) 31, 113
MalI GATC 2 cut(s) 51, 201
MboI GATC 2 cut(s) 49, 199
MboII GAAGA 2 cut(s) 43, 80
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 2 cut(s) 109, 177
Mph1103I ATGCAT 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 38
Mva1269I GAATGC 2 cut(s) 38, 40
NdeII GATC 2 cut(s) 49, 199
NlaIII CATG 1 cut(s) 11
NmeAIII GCCGAG 1 cut(s) 128
NsiI ATGCAT 1 cut(s) 40
PctI GAATGC 2 cut(s) 38, 40
PdmI GAANNNNTTC 1 cut(s) 38
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 60
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Sau3AI GATC 2 cut(s) 49, 199
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 1 cut(s) 129
SetI ASST 1 cut(s) 195
TscAI CASTG 1 cut(s) 94
TspDTI ATGAA 3 cut(s) 24, 31, 97
TspRI CASTG 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.