Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014328

Physical Location & Seq

Genomic Coordinates Forward (+)

35690759 .. 35701840

Gene Structure 11082 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2517 bp

ATGCTCCGGCTCCGATGCCTCCTTCTCTGCCTCACTATCCACTTCGCCGCGGTTGCCGCCACGTTCTTCAAGCCGTTCAACGTCAGCTACGACCACCGCGCTCTCATCATCGATGGCAACCGCCGCATGCTCATCTCCGCCGGCATCCACTACCCTCGCGCCACTCCCCAGATGTGGCCTGATTTGATTGCAAAGAGCAAGGAAGGCGGGGCGGATGTGATCCAGACCTATGCATTTTGGAGCGGCCACGAGCCGCAGAGAGGACAGTACTATTTTGAAGGGAGATATGATATCGTCAAGTTTGTGAAGTTAGTGGGAGCTAGTGGACTCTATCTCCATCTTCGCATAGGGCCTTACGTCTGCGCTGAGTGGAACTTTGGTGGCTTCCCGGTGTGGTTGCGGGACATACCTGGAATAGAATTCCGAACAAACAATGCACCTTTTAAGGAAGAGATGCAGCGGTTTGTTAAAAAGATGGTGGATCTGATGCAAGAGGAAGAGCTGTTTTGTTGGCAAGGTGGTCCAGTAATTATGCTACAGATTGAAAATGAATATGGAAATATGGAAAGCTCATATGGACAGAGAGGGAAGGAATATGTTAAGTGGGCTGCTGAGATGGCTCTAGGTCTCGGTGCTGGGGTCCCATGGGTCATGTGCAAGCAAGTTGATGCTCCAGGAAGTATTATAGATGCATGCAATGGATACTACTGTGATGGATACAAGTCAAATTCATATAATAAGCCAATTCTTTGGACAGAAGACTGGGATGGATGGTATGCATCATGGGGTGGAAGTTTGCCTCACAGGCCTGTTGAAGATCTTGCATTTGCAGTAGCACGCTTTTTCCAACGTGGAGGGAGCTTTCAGAATTATTATATGGATCTACATGCTGCTATAAAGCTGTGTGAGCCTGCTCTTGTTGCTGCTGATTCACCGGATTACATTAAATTGGGACCAAAACAGGAGGCACATGTATACGGTTCAACAGTTCACACTAAAGGCTTAAACTTTACTTGGTTTGGTAGAAGTCAAAGCCAGTGTTCTGCATTCCTCGCAAACATTGATGAACATAGATCAGCTTCTGTAACATTCCTAGGTCAAACATATAATCTGCCACCATGGTCAGTCAGTATATTGCCAGACTGTAGGAACGTTGTGTTCAACACTGCCAAGGTTGGGGCGCAAACTTCCATAAAAAGAGTAAACTCTGATTTGCCTCTTCCAGTTATTTCCGAGAACAAAAATTTGTATACCATGAAACCCTGGATGACTTTAGAAGAGCCAATTGGTATTTGGAGTGAGAATAATTTTACAGTCCGAGGAATATTGGAGCATTTAAATGTGACAAAGGACCATTCTGATTACCTGTGGCATATAACCAGAATATTTGTTTCAGATGAGGACATCTCTTTTTGGGAGGAAAGCAATATTAGTCCAGCAATTACAATCGATAGCATGCGAGATGTGTTGCGTGTATTTGTTAATGGCCAGCTTACAGGCAGTGTGATCGGTCATTGGGTCAAGGTAGTGCAGCCTGTTAGGTTTGTCAAGGGATATAATGACTTGTTGCTGTTAACTCAGACAGTTGGCTTGCAGAACTATGGTGCTTTCCTTGAGAAAGATGGGGCAGGATTTAGAGGACATGTCAAACTGACTGGGTTTAAAAATGGGGATATCGACCTCTCAACATTGTTATGGACTTACCAGGTTGGGCTTAAAGGAGAGTTTTTCAAAATATACACCGTAGAAGAAAATGAGAAGGCAGGTTGGGCTGAGTTGTCACTAGATGCTGATCCATCCACTTTTACCTGGTACAAGACATACTTTGATAGCCCTGCTGGCACAGATCCAGTGGCTCTAAATTTAGGAAGCATGGGAAAGGGCCAGGCTTGGGTCAATGGCCACCATATAGGAAGGTATTGGACACTTGTTGCTCCAAAAGATGGATGCCAAGAAATCTGTGATTATCGAGGGGCATACAACTCCGATAAGTGCACAACAAATTGTGGGAAGCCTACTCAAACCTGGTACCATATTCCACGGTCATGGTTGCAGGCTTCAAGTAATTTACTTGTTATCTTTGAGGAAATTGGAGGGAATCCATTTGAGATTTCAATCAACTCGCGTGCAGTTGGAACCATCTGTGCTCAAGTGTCAGAATCTCACTACCCACCTGTCCAGAAGTGGTTCAGTCCAGATTTTATTGATGAAAAAGGCAGAGTAAATGATCGGACACCAGAAATTCACTTGCAATGTCAAGACGGGTTTATAATATCTTCCATAGAATTTGCTAGCTATGGAAGTCCTCAAGGTCGTTGCCAGAAGTTTTCTCAAGGGAATTGCCACGCTTCGAATTCTTTCTCCATAGTTTCCGAGGCTTGCCTGGGAAAGAATAGCTGTTCAGTCGGAGTATCAAATCTTGTATTTGGAGATGACCCATGCCGGGGTATTGTTAAGACGTTGGCTGTTGAGGCAAGATGCAGGTCACTACCAACCGTTGGTTTTTCTCAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009505 GO:0015925 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

838

Amino Acids

94.17

Weight (kDa)

6.12

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	35 - 293	3.4e-93	Glycosyl hydrolases family 35
GHD	PF17834	338 - 392	1.2e-24	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	603 - 689	1.4e-25	Beta-galactosidase, galactose-binding domain
SUEL_Lectin	PF02140	750 - 827	8.4e-23	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014328)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32810 AT2G32810
fragaria_vesca	FvH4_4g13490
malus_domestica	MD13G1283100.v1.1
prunus_persica	Prupe.1G160600_v2.0.a1 Prupe.1G160600_v2.0.a1
pyrus_communis	pycom420g01190
rosa_chinensis	RchiOBHm_Chr4g0414111
rosa_laevigata	RLG00000008175
rosa_multiflora	Rmu_sc0003264.1_g000008
rosa_roxburghii	Rroxscaffold_5G00358040
rosa_rugosa	Rorug04G0125600 Rorug04G0125700
rosa_samantha	Rh4AG184200 Rh4BG183700 Rh4DG179600
rosa_wichuraiana	Rw4G015680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2270
Acc36I	ACCTGC	2 cut(s)	1754, 2472
Acc65I	GGTACC	1 cut(s)	2028
AccB1I	GGYRCC	1 cut(s)	2028
AccB7I	CCANNNNNTGG	2 cut(s)	1943, 2498
AccBSI	CCGCTC	1 cut(s)	243
AccI	GTMKAC	2 cut(s)	975, 1250
AccII	CGCG	4 cut(s)	50, 99, 159, 2125
AclI	AACGTT	1 cut(s)	1152
AclWI	GGATC	5 cut(s)	214, 489, 888, 1787, 1841
AcoI	YGGCCR	3 cut(s)	244, 1486, 1900
AcsI	RAATTY	7 cut(s)	419, 727, 1243, 1861, 2241, 2285, 2353
AfaI	GTAC	3 cut(s)	269, 1814, 2030
AfiI	CCNNNNNNNGG	8 cut(s)	174, 260, 1176, 1891, 1943, 2443, 2444, 2498
AflIII	ACRYGT	2 cut(s)	970, 1642
AjnI	CCWGG	8 cut(s)	409, 673, 1262, 1704, 1808, 1884, 2024, 2382
AjuI	GAANNNNNNNTTGG	2 cut(s)	1269, 1301
Alw21I	GWGCWC	2 cut(s)	1997, 2149
Alw26I	GTCTC	1 cut(s)	632
Alw44I	GTGCAC	1 cut(s)	1993
AlwI	GGATC	5 cut(s)	214, 489, 888, 1787, 1841
AlwNI	CAGNNNCTG	1 cut(s)	1082
AoxI	GGCC	7 cut(s)	176, 244, 350, 806, 1486, 1882, 1900
ApaLI	GTGCAC	1 cut(s)	1993
ApeKI	GCWGC	5 cut(s)	457, 608, 890, 923, 1531
ApoI	RAATTY	7 cut(s)	419, 727, 1243, 1861, 2241, 2285, 2353
Asp700I	GAANNNNTTC	2 cut(s)	2186, 2357
Asp718I	GGTACC	1 cut(s)	2028
AspA2I	CCTAGG	1 cut(s)	1093
AspLEI	GCGC	4 cut(s)	101, 161, 365, 1183
AspS9I	GGNCC	6 cut(s)	350, 521, 640, 953, 1351, 1882
AsuC2I	CCSGG	2 cut(s)	389, 2444
AsuHPI	GGTGA	1 cut(s)	924
AsuII	TTCGAA	1 cut(s)	2351
AsuNHI	GCTAGC	1 cut(s)	2291
AvaII	GGWCC	4 cut(s)	521, 640, 953, 1351
AvrII	CCTAGG	1 cut(s)	1093
BaeGI	GKGCMC	1 cut(s)	1997
BaeI	ACNNNNGTAYC	2 cut(s)	694, 727
BalI	TGGCCA	2 cut(s)	1488, 1902
BanI	GGYRCC	1 cut(s)	2028
BauI	CACGAG	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	765
Bbv12I	GWGCWC	2 cut(s)	1997, 2149
BbvI	GCAGC	5 cut(s)	469, 595, 877, 910, 1543
BceAI	ACGGC	1 cut(s)	58
BcgI	CGANNNNNNTGC	2 cut(s)	1489, 1523
BciT130I	CCWGG	8 cut(s)	411, 675, 1264, 1706, 1810, 1886, 2026, 2384
BciVI	GTATCC	2 cut(s)	695, 710
BcnI	CCSGG	2 cut(s)	389, 2444
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	5 cut(s)	321, 623, 1094, 1784, 2292
BfmI	CTRYAG	2 cut(s)	536, 1144
BfuAI	ACCTGC	2 cut(s)	1754, 2472
BfuI	GTATCC	2 cut(s)	695, 710
BglI	GCCNNNNNGGC	2 cut(s)	805, 1839
BglII	AGATCT	1 cut(s)	817
BlnI	CCTAGG	1 cut(s)	1093
BmcAI	AGTACT	1 cut(s)	269
Bme18I	GGWCC	4 cut(s)	521, 640, 953, 1351
BmgT120I	GGNCC	6 cut(s)	350, 521, 640, 953, 1351, 1882
BmiI	GGNNCC	6 cut(s)	11, 641, 642, 954, 2030, 2137
BmrI	ACTGGG	2 cut(s)	772, 1665
BmtI	GCTAGC	1 cut(s)	2295
BmuI	ACTGGG	2 cut(s)	772, 1665
BpiI	GAAGAC	1 cut(s)	765
BplI	GAGNNNNNCTC	2 cut(s)	1391, 1423
BpmI	CTGGAG	1 cut(s)	657
Bpu14I	TTCGAA	1 cut(s)	2351
BpuEI	CTTGAG	4 cut(s)	1634, 2133, 2292, 2316
BpuMI	CCSGG	2 cut(s)	389, 2444
Bsa29I	ATCGAT	2 cut(s)	111, 1449
BsaBI	GATNNNNATC	2 cut(s)	1791, 2114
BsaI	GGTCTC	1 cut(s)	632
BsaWI	WCCGGW	1 cut(s)	934
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	8 cut(s)	174, 260, 1176, 1891, 1943, 2443, 2444, 2498
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	6 cut(s)	524, 767, 1036, 1223, 1660, 1850
Bse3DI	GCAATG	2 cut(s)	703, 2258
Bse8I	GATNNNNATC	2 cut(s)	1791, 2114
BseBI	CCWGG	8 cut(s)	411, 675, 1264, 1706, 1810, 1886, 2026, 2384
BseCI	ATCGAT	2 cut(s)	111, 1449
BseGI	GGATG	7 cut(s)	144, 220, 772, 776, 1272, 1796, 1952
BseJI	GATNNNNATC	2 cut(s)	1791, 2114
BseLI	CCNNNNNNNGG	8 cut(s)	174, 260, 1176, 1891, 1943, 2443, 2444, 2498
BseMI	GCAATG	2 cut(s)	703, 2258
BseMII	CTCAG	4 cut(s)	357, 603, 1592, 1764
BseNI	ACTGG	6 cut(s)	524, 767, 1036, 1223, 1660, 1850
BseSI	GKGCMC	1 cut(s)	1997
BseXI	GCAGC	5 cut(s)	469, 595, 877, 910, 1543
BseYI	CCCAGC	1 cut(s)	635
BsgI	GTGCAG	2 cut(s)	1550, 2148
Bsh1236I	CGCG	4 cut(s)	50, 99, 159, 2125
BshFI	GGCC	7 cut(s)	178, 246, 352, 808, 1488, 1884, 1902
BshNI	GGYRCC	1 cut(s)	2028
BshVI	ATCGAT	2 cut(s)	111, 1449
BsiHKAI	GWGCWC	2 cut(s)	1997, 2149
BsiSI	CCGG	5 cut(s)	7, 141, 389, 935, 2443
BslFI	GGGAC	3 cut(s)	416, 626, 966
BslI	CCNNNNNNNGG	8 cut(s)	174, 260, 1176, 1891, 1943, 2443, 2444, 2498
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	3 cut(s)	416, 626, 966
BsmI	GAATGC	1 cut(s)	1046
BsnI	GGCC	7 cut(s)	178, 246, 352, 808, 1488, 1884, 1902
Bso31I	GGTCTC	1 cut(s)	632
Bsp119I	TTCGAA	1 cut(s)	2351
Bsp1286I	GDGCHC	2 cut(s)	1997, 2149
Bsp143I	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
Bsp19I	CCATGG	2 cut(s)	644, 1118
BspANI	GGCC	7 cut(s)	178, 246, 352, 808, 1488, 1884, 1902
BspCNI	CTCAG	4 cut(s)	358, 604, 1591, 1765
BspDI	ATCGAT	2 cut(s)	111, 1449
BspFNI	CGCG	4 cut(s)	50, 99, 159, 2125
BspLI	GGNNCC	6 cut(s)	11, 641, 642, 954, 2030, 2137
BspMI	ACCTGC	2 cut(s)	1754, 2472
BspOI	GCTAGC	1 cut(s)	2295
BspPI	GGATC	5 cut(s)	214, 489, 888, 1787, 1841
BspQI	GCTCTTC	2 cut(s)	492, 1272
BspT104I	TTCGAA	1 cut(s)	2351
BspT107I	GGYRCC	1 cut(s)	2028
BspTNI	GGTCTC	1 cut(s)	632
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	2 cut(s)	703, 2258
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	6 cut(s)	524, 767, 1036, 1223, 1660, 1850
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
BssNAI	GTATAC	2 cut(s)	976, 1251
BssSI	CACGAG	1 cut(s)	248
BssT1I	CCWWGG	4 cut(s)	644, 1093, 1118, 1170
Bst1107I	GTATAC	2 cut(s)	976, 1251
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	8 cut(s)	411, 675, 1264, 1706, 1810, 1886, 2026, 2384
Bst6I	CTCTTC	4 cut(s)	444, 492, 1224, 1272
BstBI	TTCGAA	1 cut(s)	2351
BstDEI	CTNAG	5 cut(s)	366, 612, 1578, 1773, 2508
BstDSI	CCRYGG	4 cut(s)	48, 644, 1118, 2039
BstF5I	GGATG	7 cut(s)	144, 220, 772, 776, 1272, 1796, 1952
BstFNI	CGCG	4 cut(s)	50, 99, 159, 2125
BstHHI	GCGC	4 cut(s)	101, 161, 365, 1183
BstKTI	GATC	9 cut(s)	222, 484, 820, 883, 1076, 1509, 1795, 1849, 2230
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
BstNI	CCWGG	8 cut(s)	411, 675, 1264, 1706, 1810, 1886, 2026, 2384
BstNSI	RCATGY	6 cut(s)	130, 696, 890, 974, 1459, 1646
BstSFI	CTRYAG	2 cut(s)	536, 1144
BstSLI	GKGCMC	1 cut(s)	1997
BstUI	CGCG	4 cut(s)	50, 99, 159, 2125
BstV1I	GCAGC	5 cut(s)	469, 595, 877, 910, 1543
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	4 cut(s)	481, 817, 880, 1846
BstXI	CCANNNNNNTGG	2 cut(s)	750, 2046
BstYI	RGATCY	4 cut(s)	481, 817, 880, 1846
BstZ17I	GTATAC	2 cut(s)	976, 1251
Bsu15I	ATCGAT	2 cut(s)	111, 1449
BsuI	GTATCC	2 cut(s)	695, 710
BsuRI	GGCC	7 cut(s)	178, 246, 352, 808, 1488, 1884, 1902
BsuTUI	ATCGAT	2 cut(s)	111, 1449
BtgI	CCRYGG	4 cut(s)	48, 644, 1118, 2039
BtsCI	GGATG	7 cut(s)	144, 220, 772, 776, 1272, 1796, 1952
BtsI	GCAGTG	2 cut(s)	1164, 1507
BtsIMutI	CAGTG	4 cut(s)	1043, 1164, 1507, 1857
BveI	ACCTGC	2 cut(s)	1754, 2472
CaiI	CAGNNNCTG	1 cut(s)	1082
CfoI	GCGC	4 cut(s)	101, 161, 365, 1183
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	6 cut(s)	350, 521, 640, 953, 1351, 1882
Cfr42I	CCGCGG	1 cut(s)	51
ClaI	ATCGAT	2 cut(s)	111, 1449
CsiI	ACCWGGT	3 cut(s)	1704, 1808, 2024
Csp6I	GTAC	3 cut(s)	268, 1813, 2029
CviQI	GTAC	3 cut(s)	268, 1813, 2029
DdeI	CTNAG	5 cut(s)	366, 612, 1578, 1773, 2508
DpnI	GATC	9 cut(s)	221, 483, 819, 882, 1075, 1508, 1794, 1848, 2229
DpnII	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
DraI	TTTAAA	2 cut(s)	1338, 1663
EaeI	YGGCCR	3 cut(s)	244, 1486, 1900
Eam1104I	CTCTTC	4 cut(s)	444, 492, 1224, 1272
EarI	CTCTTC	4 cut(s)	444, 492, 1224, 1272
EciI	GGCGGA	2 cut(s)	127, 227
Eco130I	CCWWGG	4 cut(s)	644, 1093, 1118, 1170
Eco147I	AGGCCT	1 cut(s)	808
Eco31I	GGTCTC	1 cut(s)	632
Eco32I	GATATC	2 cut(s)	292, 1675
Eco47I	GGWCC	4 cut(s)	521, 640, 953, 1351
EcoO109I	RGGNCCY	2 cut(s)	350, 640
EcoRI	GAATTC	2 cut(s)	419, 2353
EcoRII	CCWGG	8 cut(s)	409, 673, 1262, 1704, 1808, 1884, 2024, 2382
EcoRV	GATATC	2 cut(s)	292, 1675
EcoT14I	CCWWGG	4 cut(s)	644, 1093, 1118, 1170
EcoT22I	ATGCAT	3 cut(s)	235, 694, 781
ErhI	CCWWGG	4 cut(s)	644, 1093, 1118, 1170
FalI	AAGNNNNNCTT	2 cut(s)	1808, 1840
FaqI	GGGAC	3 cut(s)	416, 626, 966
FauI	CCCGC	2 cut(s)	200, 393
FauNDI	CATATG	1 cut(s)	574
FblI	GTMKAC	2 cut(s)	975, 1250
FokI	GGATG	7 cut(s)	131, 227, 779, 783, 1279, 1783, 1959
FspBI	CTAG	5 cut(s)	321, 623, 1094, 1784, 2292
GlaI	GCGC	4 cut(s)	100, 160, 364, 1182
GsaI	CCCAGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	657
HaeIII	GGCC	7 cut(s)	178, 246, 352, 808, 1488, 1884, 1902
HapII	CCGG	5 cut(s)	7, 141, 389, 935, 2443
HhaI	GCGC	4 cut(s)	101, 161, 365, 1183
Hin6I	GCGC	4 cut(s)	99, 159, 363, 1181
HinP1I	GCGC	4 cut(s)	99, 159, 363, 1181
HincII	GTYRAC	1 cut(s)	1575
HindII	GTYRAC	1 cut(s)	1575
HinfI	GANTC	4 cut(s)	327, 929, 2098, 2159
HpaI	GTTAAC	1 cut(s)	1575
HpaII	CCGG	5 cut(s)	7, 141, 389, 935, 2443
HphI	GGTGA	1 cut(s)	924
Hpy166II	GTNNAC	7 cut(s)	326, 976, 991, 1204, 1251, 1575, 1995
Hpy188III	TCNNGA	4 cut(s)	223, 2179, 2195, 2258
Hpy8I	GTNNAC	7 cut(s)	326, 976, 991, 1204, 1251, 1575, 1995
HpyAV	CCTTC	6 cut(s)	32, 197, 272, 583, 1753, 1908
HpyCH4IV	ACGT	6 cut(s)	62, 81, 357, 850, 1152, 2459
HpyF3I	CTNAG	5 cut(s)	366, 612, 1578, 1773, 2508
HpySE526I	ACGT	6 cut(s)	62, 81, 357, 850, 1152, 2459
HspAI	GCGC	4 cut(s)	99, 159, 363, 1181
KflI	GGGWCCC	1 cut(s)	640
KpnI	GGTACC	1 cut(s)	2032
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
KspAI	GTTAAC	1 cut(s)	1575
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
LguI	GCTCTTC	2 cut(s)	492, 1272
LmnI	GCTCC	8 cut(s)	9, 15, 240, 317, 676, 858, 1330, 1939
Lsp1109I	GCAGC	5 cut(s)	469, 595, 877, 910, 1543
MabI	ACCWGGT	3 cut(s)	1704, 1808, 2024
MaeI	CTAG	5 cut(s)	321, 623, 1094, 1784, 2292
MaeII	ACGT	6 cut(s)	62, 81, 357, 850, 1152, 2459
MaeIII	GTNAC	4 cut(s)	1084, 1342, 1779, 2484
MalI	GATC	9 cut(s)	221, 483, 819, 882, 1075, 1508, 1794, 1848, 2229
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
MfeI	CAATTG	1 cut(s)	1284
MflI	RGATCY	4 cut(s)	481, 817, 880, 1846
MhlI	GDGCHC	2 cut(s)	1997, 2149
MlsI	TGGCCA	2 cut(s)	1488, 1902
MluNI	TGGCCA	2 cut(s)	1488, 1902
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	3 cut(s)	871, 2113, 2386
Mox20I	TGGCCA	2 cut(s)	1488, 1902
Mph1103I	ATGCAT	3 cut(s)	235, 694, 781
MroNI	GCCGGC	1 cut(s)	140
MroXI	GAANNNNTTC	2 cut(s)	2186, 2357
MscI	TGGCCA	2 cut(s)	1488, 1902
MslI	CAYNNNNRTG	3 cut(s)	1338, 1693, 2044
Msp20I	TGGCCA	2 cut(s)	1488, 1902
MspA1I	CMGCKG	2 cut(s)	50, 460
MspI	CCGG	5 cut(s)	7, 141, 389, 935, 2443
MunI	CAATTG	1 cut(s)	1284
Mva1269I	GAATGC	1 cut(s)	1046
MvaI	CCWGG	8 cut(s)	411, 675, 1264, 1706, 1810, 1886, 2026, 2384
MvnI	CGCG	4 cut(s)	50, 99, 159, 2125
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	2 cut(s)	389, 2444
NcoI	CCATGG	2 cut(s)	644, 1118
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
NgoMIV	GCCGGC	1 cut(s)	140
NheI	GCTAGC	1 cut(s)	2291
NlaIV	GGNNCC	6 cut(s)	11, 641, 642, 954, 2030, 2137
NmuCI	GTSAC	3 cut(s)	1342, 1779, 2484
NsiI	ATGCAT	3 cut(s)	235, 694, 781
NspI	RCATGY	6 cut(s)	130, 696, 890, 974, 1459, 1646
NspV	TTCGAA	1 cut(s)	2351
PaeI	GCATGC	3 cut(s)	130, 696, 1459
PceI	AGGCCT	1 cut(s)	808
PciI	ACATGT	2 cut(s)	970, 1642
PciSI	GCTCTTC	2 cut(s)	492, 1272
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	1046
PdiI	GCCGGC	1 cut(s)	142
PdmI	GAANNNNTTC	2 cut(s)	2186, 2357
PfeI	GAWTC	3 cut(s)	929, 2098, 2159
PflMI	CCANNNNNTGG	2 cut(s)	1943, 2498
PfoI	TCCNGGA	1 cut(s)	673
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	640
PscI	ACATGT	2 cut(s)	970, 1642
PsiI	TTATAA	1 cut(s)	2270
Psp1406I	AACGTT	1 cut(s)	1152
Psp5II	RGGWCCY	1 cut(s)	640
Psp6I	CCWGG	8 cut(s)	409, 673, 1262, 1704, 1808, 1884, 2024, 2382
PspFI	CCCAGC	1 cut(s)	635
PspGI	CCWGG	8 cut(s)	409, 673, 1262, 1704, 1808, 1884, 2024, 2382
PspN4I	GGNNCC	6 cut(s)	11, 641, 642, 954, 2030, 2137
PspPI	GGNCC	6 cut(s)	350, 521, 640, 953, 1351, 1882
PspPPI	RGGWCCY	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	1082
PsuI	RGATCY	4 cut(s)	481, 817, 880, 1846
RsaI	GTAC	3 cut(s)	269, 1814, 2030
RsaNI	GTAC	3 cut(s)	268, 1813, 2029
RseI	CAYNNNNRTG	3 cut(s)	1338, 1693, 2044
SacII	CCGCGG	1 cut(s)	51
SapI	GCTCTTC	2 cut(s)	492, 1272
Sau3AI	GATC	9 cut(s)	219, 481, 817, 880, 1073, 1506, 1792, 1846, 2227
Sau96I	GGNCC	6 cut(s)	350, 521, 640, 953, 1351, 1882
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	1997, 2149
SexAI	ACCWGGT	3 cut(s)	1704, 1808, 2024
SfcI	CTRYAG	2 cut(s)	536, 1144
Sfr303I	CCGCGG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	2351
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	4 cut(s)	521, 640, 953, 1351
SmiI	ATTTAAAT	1 cut(s)	1338
SmiMI	CAYNNNNRTG	3 cut(s)	1338, 1693, 2044
SmlI	CTYRAG	4 cut(s)	1613, 2148, 2307, 2331
SmoI	CTYRAG	4 cut(s)	1613, 2148, 2307, 2331
SphI	GCATGC	3 cut(s)	130, 696, 1459
SseBI	AGGCCT	1 cut(s)	808
SspI	AATATT	3 cut(s)	1326, 1386, 1429
SspMI	CTAG	5 cut(s)	321, 623, 1094, 1784, 2292
StuI	AGGCCT	1 cut(s)	808
StyI	CCWWGG	4 cut(s)	644, 1093, 1118, 1170
SwaI	ATTTAAAT	1 cut(s)	1338
TaiI	ACGT	6 cut(s)	65, 84, 360, 853, 1155, 2462
TaqI	TCGA	5 cut(s)	111, 1449, 1677, 1969, 2351
TaqII	GACCGA	1 cut(s)	1499
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	5 cut(s)	50, 59, 126, 246, 256
TfiI	GAWTC	3 cut(s)	929, 2098, 2159
TscAI	CASTG	4 cut(s)	1043, 1171, 1507, 1857
TseFI	GTSAC	3 cut(s)	1342, 1779, 2484
TseI	GCWGC	5 cut(s)	457, 608, 890, 923, 1531
Tsp45I	GTSAC	3 cut(s)	1342, 1779, 2484
TspDTI	ATGAA	5 cut(s)	564, 720, 1080, 1271, 2223
TspRI	CASTG	4 cut(s)	1043, 1171, 1507, 1857
Van91I	CCANNNNNTGG	2 cut(s)	1943, 2498
VneI	GTGCAC	1 cut(s)	1993
VpaK11BI	GGWCC	4 cut(s)	521, 640, 953, 1351
XapI	RAATTY	7 cut(s)	419, 727, 1243, 1861, 2241, 2285, 2353
XceI	RCATGY	6 cut(s)	130, 696, 890, 974, 1459, 1646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1290
XmaJI	CCTAGG	1 cut(s)	1093
XmiI	GTMKAC	2 cut(s)	975, 1250
XmnI	GAANNNNTTC	2 cut(s)	2186, 2357
XspI	CTAG	5 cut(s)	321, 623, 1094, 1784, 2292
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	3 cut(s)	235, 694, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.