Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007124

Physical Location & Seq

Genomic Coordinates Forward (+)

41175780 .. 41185615

Gene Structure 9836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0242900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGCGGAAAATTTTGATCAAATCGACTCTATATAAAGCCATAAAACTTGCCAGACTTCGACTCTGTTTGCAATTGTTCTGGTCTTTGGATTTCCTTCTACTGCTATACGGGTTATTTGCAATTGCTCTGATCTCTGGATTTTCTTCTGCCGCTAAAAAGAATTGTCTAGGAGCACTTGATGGAACTCAGATTCCAGTGACTGTGTCAGCTGAGGAAAGACTAAGATATCGAAATAGAAAGGGTGATATTTCTACTAACGTCTTAGAGGTTTGTGCCCTTGATTTAAAATTTATTTATGTATTGCATGGATGGGAGGGTTCTGCTTCTGATGCTCGTGTTTTACGAGATGCTCTACGTAGAAATAATCGGCTTCATGTTCCAAGGGATAAATACTTTCTGGTGGATGCGGGATACACTAACGGGCCTGGTTTTTTAGCACCATATCGAGGAACTAGATACCACTTAAATGAATGGACTGGGAATCGACCTGAAAATTACAAGGAATTGTATAATCTTCGTCATTCAATTGCAAGAAATGTAATTGAACGGTCATTTGGGTTGTTAAAAAAGCGATGGAGTATAATGCGTACTCCATCATTTTTCAGCATTAAAACACAAGTTAGGATCATAAATGCTTGTTGTGTTTTGCACAATTTTATTCGAATTGAGCAAGCTAGTGATCCTGTTTTAGAAGATCAAGATTCAAGGTTCTTAGCAGCTGTTGATTTGGAGATATTAAATCGTCCAACGTCAGAGAGTAATGCAAATAATTTAAATGATAGGATTGCATCAGTTCAAGCAACTGAGCAGTGGACAAATTTTCGTGATACATTTGCATTGCAGATGTTCCAGGATTATCAAGCGCGACATGCCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0009524 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

293

Amino Acids

33.74

Weight (kDa)

9.68

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDE_Tnp_1	PF01609	55 - 217	3e-09	Transposase DDE domain
DDE_Tnp_4	PF13359	60 - 219	7.3e-26	DDE superfamily endonuclease
Plant_tran	PF04827	81 - 224	2.1e-07	Plant transposon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27920 AT1G27920
fragaria_vesca	FvH4_4g23850 FvH4_4g23850
malus_domestica	MD13G1118200.v1.1 MD16G1118300.v1.1
prunus_persica	Prupe.1G226800_v2.0.a1 Prupe.1G226800_v2.0.a1 Prupe.1G226800_v2.0.a1 Prupe.1G226800_v2.0.a1
pyrus_communis	pycom13g10290 pycom16g10130
rosa_chinensis	RchiOBHm_Chr4g0430421
rosa_laevigata	RLG00000006978
rosa_multiflora	Rmu_sc0000131.1_g000043 Rmu_sc0016735.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372200
rosa_rugosa	Rorug04G0242800 Rorug04G0242900 Rorug04G0243000
rosa_samantha	Rh4AG299300 Rh4BG306100 Rh4CG321900 Rh4DG303500
rosa_wichuraiana	Rw4G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	7, 868
AciI	CCGC	3 cut(s)	7, 153, 410
AclWI	GGATC	2 cut(s)	635, 677
AcsI	RAATTY	3 cut(s)	12, 290, 820
AfaI	GTAC	1 cut(s)	592
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	4 cut(s)	528, 548, 708, 800
AjnI	CCWGG	2 cut(s)	427, 852
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	212, 677, 722
AluI	AGCT	3 cut(s)	212, 677, 722
Alw21I	GWGCWC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	635, 677
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	3 cut(s)	12, 290, 820
AspLEI	GCGC	2 cut(s)	7, 868
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	664
BaeGI	GKGCMC	1 cut(s)	280
BauI	CACGAG	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	731
BccI	CCATC	4 cut(s)	176, 306, 570, 604
BciT130I	CCWGG	2 cut(s)	429, 854
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	18
BfaI	CTAG	3 cut(s)	170, 456, 678
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	153, 720
BlsI	GCNGC	2 cut(s)	154, 721
Bme1390I	CCNGG	2 cut(s)	429, 854
BmgT120I	GGNCC	1 cut(s)	425
BmrFI	CCNGG	2 cut(s)	429, 854
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	4 cut(s)	322, 340, 397, 800
BmuI	ACTGGG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	664
BsaAI	YACGTR	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	2 cut(s)	197, 484
Bse3DI	GCAATG	1 cut(s)	839
BseBI	CCWGG	2 cut(s)	429, 854
BseDI	CCNNGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	317, 412
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	3 cut(s)	203, 204, 798
BseNI	ACTGG	2 cut(s)	197, 484
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	1 cut(s)	731
Bsh1236I	CGCG	2 cut(s)	7, 868
BshFI	GGCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	449
BsnI	GGCC	1 cut(s)	427
Bsp119I	TTCGAA	1 cut(s)	664
Bsp1286I	GDGCHC	2 cut(s)	178, 280
Bsp143I	GATC	5 cut(s)	18, 132, 627, 682, 697
BspACI	CCGC	3 cut(s)	7, 153, 410
BspANI	GGCC	1 cut(s)	427
BspCNI	CTCAG	3 cut(s)	202, 205, 799
BspFNI	CGCG	2 cut(s)	7, 868
BspPI	GGATC	2 cut(s)	635, 677
BspT104I	TTCGAA	1 cut(s)	664
BsrDI	GCAATG	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	197, 484
BssECI	CCNNGG	1 cut(s)	383
BssMI	GATC	5 cut(s)	18, 132, 627, 682, 697
BssSI	CACGAG	1 cut(s)	336
BssT1I	CCWWGG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	429, 854
Bst4CI	ACNGT	2 cut(s)	205, 552
BstBAI	YACGTR	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	664
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	6 cut(s)	189, 213, 224, 265, 715, 807
BstF5I	GGATG	2 cut(s)	317, 412
BstFNI	CGCG	2 cut(s)	7, 868
BstHHI	GCGC	2 cut(s)	7, 868
BstKTI	GATC	5 cut(s)	21, 135, 630, 685, 700
BstMBI	GATC	5 cut(s)	18, 132, 627, 682, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 872
BstNI	CCWGG	2 cut(s)	429, 854
BstNSI	RCATGY	1 cut(s)	875
BstSCI	CCNGG	2 cut(s)	427, 852
BstSLI	GKGCMC	1 cut(s)	280
BstSNI	TACGTA	1 cut(s)	359
BstUI	CGCG	2 cut(s)	7, 868
BstV1I	GCAGC	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	427
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	2 cut(s)	317, 412
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	2 cut(s)	204, 818
Cac8I	GCNNGC	1 cut(s)	675
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	2 cut(s)	7, 868
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	591
CviAII	CATG	3 cut(s)	308, 377, 872
CviJI	RGCY	6 cut(s)	41, 212, 373, 427, 677, 722
CviKI_1	RGCY	6 cut(s)	41, 212, 373, 427, 677, 722
CviQI	GTAC	1 cut(s)	591
DdeI	CTNAG	6 cut(s)	189, 213, 224, 265, 715, 807
DpnI	GATC	5 cut(s)	20, 134, 629, 684, 699
DpnII	GATC	5 cut(s)	18, 132, 627, 682, 697
DraI	TTTAAA	2 cut(s)	288, 777
Eco105I	TACGTA	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	383
Eco32I	GATATC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	427, 852
EcoRV	GATATC	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	383
FaeI	CATG	3 cut(s)	311, 380, 875
FatI	CATG	3 cut(s)	307, 376, 871
FauI	CCCGC	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	153, 720
FokI	GGATG	2 cut(s)	324, 419
Fsp4HI	GCNGC	2 cut(s)	153, 720
FspBI	CTAG	3 cut(s)	170, 456, 678
GlaI	GCGC	2 cut(s)	6, 867
GluI	GCNGC	2 cut(s)	153, 720
HaeIII	GGCC	1 cut(s)	427
HhaI	GCGC	2 cut(s)	7, 868
Hin1II	CATG	3 cut(s)	311, 380, 875
Hin6I	GCGC	2 cut(s)	5, 866
HinP1I	GCGC	2 cut(s)	5, 866
HinfI	GANTC	5 cut(s)	28, 63, 193, 484, 704
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	816
Hpy188I	TCNGA	4 cut(s)	132, 192, 331, 757
Hpy188III	TCNNGA	3 cut(s)	138, 701, 827
Hpy8I	GTNNAC	1 cut(s)	816
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	205, 552
HpyCH4IV	ACGT	3 cut(s)	261, 358, 752
HpyCH4V	TGCA	9 cut(s)	73, 122, 307, 533, 652, 767, 791, 839, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 872
HpyF3I	CTNAG	6 cut(s)	189, 213, 224, 265, 715, 807
HpySE526I	ACGT	3 cut(s)	261, 358, 752
Hsp92II	CATG	3 cut(s)	311, 380, 875
HspAI	GCGC	2 cut(s)	5, 866
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	5 cut(s)	18, 132, 627, 682, 697
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	1 cut(s)	731
LweI	GCATC	4 cut(s)	322, 340, 397, 800
MaeI	CTAG	3 cut(s)	170, 456, 678
MaeII	ACGT	3 cut(s)	261, 358, 752
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	5 cut(s)	20, 134, 629, 684, 699
MboI	GATC	5 cut(s)	18, 132, 627, 682, 697
MboII	GAAGA	3 cut(s)	138, 509, 707
MfeI	CAATTG	3 cut(s)	74, 123, 528
MhlI	GDGCHC	2 cut(s)	178, 280
MlyI	GAGTC	2 cut(s)	22, 57
MmeI	TCCRAC	1 cut(s)	773
MnlI	CCTC	4 cut(s)	208, 262, 310, 443
MseI	TTAA	6 cut(s)	287, 467, 566, 612, 740, 776
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	2 cut(s)	212, 722
MspR9I	CCNGG	2 cut(s)	429, 854
MunI	CAATTG	3 cut(s)	74, 123, 528
MvaI	CCWGG	2 cut(s)	429, 854
MvnI	CGCG	2 cut(s)	7, 868
MwoI	GCNNNNNNNGC	2 cut(s)	332, 872
NdeII	GATC	5 cut(s)	18, 132, 627, 682, 697
NlaIII	CATG	3 cut(s)	311, 380, 875
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	875
NspV	TTCGAA	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	193, 484, 704
PflFI	GACNNNGTC	1 cut(s)	205
PfoI	TCCNGGA	1 cut(s)	852
PkrI	GCNGC	2 cut(s)	154, 721
PleI	GAGTC	2 cut(s)	22, 57
PpsI	GAGTC	2 cut(s)	22, 57
Ppu21I	YACGTR	1 cut(s)	359
Psp6I	CCWGG	2 cut(s)	427, 852
PspGI	CCWGG	2 cut(s)	427, 852
PspPI	GGNCC	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	203
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	212, 722
RsaI	GTAC	1 cut(s)	592
RsaNI	GTAC	1 cut(s)	591
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	6 cut(s)	287, 467, 566, 612, 740, 776
SatI	GCNGC	2 cut(s)	153, 720
Sau3AI	GATC	5 cut(s)	18, 132, 627, 682, 697
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	2 cut(s)	22, 57
ScrFI	CCNGG	2 cut(s)	429, 854
SduI	GDGCHC	2 cut(s)	178, 280
SetI	ASST	9 cut(s)	214, 264, 273, 361, 493, 679, 713, 724, 755
SfaNI	GCATC	4 cut(s)	322, 340, 397, 800
SfuI	TTCGAA	1 cut(s)	664
SmiI	ATTTAAAT	1 cut(s)	777
SmiMI	CAYNNNNRTG	1 cut(s)	468
SnaBI	TACGTA	1 cut(s)	359
SsiI	CCGC	3 cut(s)	7, 153, 410
SspMI	CTAG	3 cut(s)	170, 456, 678
StyD4I	CCNGG	2 cut(s)	427, 852
StyI	CCWWGG	1 cut(s)	383
SwaI	ATTTAAAT	1 cut(s)	777
TaaI	ACNGT	2 cut(s)	205, 552
TaiI	ACGT	3 cut(s)	264, 361, 755
TaqI	TCGA	6 cut(s)	26, 61, 232, 448, 487, 664
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	193, 484, 704
Tru1I	TTAA	6 cut(s)	287, 467, 566, 612, 740, 776
Tru9I	TTAA	6 cut(s)	287, 467, 566, 612, 740, 776
TscAI	CASTG	2 cut(s)	204, 818
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	2 cut(s)	365, 486
TspRI	CASTG	2 cut(s)	204, 818
Tth111I	GACNNNGTC	1 cut(s)	205
XapI	RAATTY	3 cut(s)	12, 290, 820
XceI	RCATGY	1 cut(s)	875
XspI	CTAG	3 cut(s)	170, 456, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.