Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007124

Physical Location & Seq

Genomic Coordinates Forward (+)

41185842 .. 41186876

Gene Structure 1035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTAGAGTTGGAGGAAATGAGGTCAAAAACCGAAAACCAAATGGAAAGAATGAAGGAAAGAGCAAAGGAAAGGCCGAAGGCAAGAACTATTTGCAGTGGAATTTAAATATGGAGCGTGCTTTGGCTGATATACTTCGTGAGGAACGAGGTCTGGGCCATAAAGGAGATAATGGTTGGAAAGCTGTAGCTTATAATACAGCTGCTGATATTTTATCTGCACAGTTTGATATTCAAATAAGTGCTGACAATATAAAAAACCGTGTGAAATCATGGAAAAAGTTCTATGGAATTGTTAGTGATATCTTGAGCCAAAGTGGATTTAGCTGGGATTCCTCAACACAAATGATAAGCGTTGATGAAAACAGTGTATGGGAAGAATATGTGAAGTCTCATGATGAAGCTGCAAGCTTTCGGTTTAAAAGAATCCCAAATTGGGATGATATAGTTGATTTGTGTGGCAAAGATAGAGCCACTGGAGAGGGTGCTGAAACAGGTTTCGAAGCCACTGAGGTTATGACTCCTCCTACTAATGAAGATAATCATGTCGATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAAGACATTTCACCGAACCAAGGAAGTTCTCATAAAAAGAGAAATGAAGCAACAATCTCTTCTAGTGCACCTCCTCCAAAGAGAAGAGTTACAACTAAAGATGTCTTAGGTACTTCCGTGGATAGAATGGCTTCATCTTTTGAAGAACTCATTCGTGCTACTACAAAAAGTCTTGCCCCGAAAGATGTATGGACAGAAATAATGGCAATACAAGATCTTTCTAGAGAAGAACAGATAAAAGCATGCGCTTGGTTTATAGAGAACGACAAACAATTTCTCATGTTGAAGGAAGTCCCAGTGGAAATGAAAAAAGACATGGTGTTGATGTTTATTTCATATGGATCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0009524 GO:0015630 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

314

Amino Acids

35.23

Weight (kDa)

5.2

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	33 - 128	7.4e-17	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27920 AT1G27920
fragaria_vesca	FvH4_4g23850 FvH4_4g23850
malus_domestica	MD13G1118200.v1.1 MD16G1118300.v1.1
prunus_persica	Prupe.1G226800_v2.0.a1 Prupe.1G226800_v2.0.a1 Prupe.1G226800_v2.0.a1 Prupe.1G226800_v2.0.a1
pyrus_communis	pycom13g10290 pycom16g10130
rosa_chinensis	RchiOBHm_Chr4g0430421
rosa_laevigata	RLG00000006978
rosa_multiflora	Rmu_sc0000131.1_g000043 Rmu_sc0016735.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372200
rosa_rugosa	Rorug04G0242800 Rorug04G0242900 Rorug04G0243000
rosa_samantha	Rh4AG299300 Rh4BG306100 Rh4CG321900 Rh4DG303500
rosa_wichuraiana	Rw4G025990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	195
AclWI	GGATC	1 cut(s)	943
AcsI	RAATTY	1 cut(s)	103
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	2 cut(s)	436, 614
AgsI	TTSAA	4 cut(s)	236, 596, 737, 880
AjuI	GAANNNNNNNTTGG	2 cut(s)	418, 450
AluBI	AGCT	6 cut(s)	185, 191, 203, 327, 404, 411
AluI	AGCT	6 cut(s)	185, 191, 203, 327, 404, 411
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	1 cut(s)	396
Alw44I	GTGCAC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	943
AlwNI	CAGNNNCTG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	75, 157
ApaLI	GTGCAC	1 cut(s)	660
ApeKI	GCWGC	2 cut(s)	203, 404
ApoI	RAATTY	1 cut(s)	103
Asp700I	GAANNNNTTC	4 cut(s)	281, 582, 724, 744
AspLEI	GCGC	1 cut(s)	842
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	572, 597
AsuII	TTCGAA	1 cut(s)	501
BaeGI	GKGCMC	1 cut(s)	664
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	2 cut(s)	190, 391
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	657, 816
BfmI	CTRYAG	1 cut(s)	186
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	2 cut(s)	204, 405
BlsI	GCNGC	2 cut(s)	205, 406
BmgT120I	GGNCC	1 cut(s)	157
BmrI	ACTGGG	1 cut(s)	884
BmsI	GCATC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	884
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	501
BpuEI	CTTGAG	1 cut(s)	328
BsaJI	CCNNGG	2 cut(s)	613, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 614
Bse1I	ACTGG	2 cut(s)	481, 890
BseDI	CCNNGG	2 cut(s)	613, 711
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	436, 614
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	2 cut(s)	481, 890
BseRI	GAGGAG	2 cut(s)	513, 657
BseSI	GKGCMC	1 cut(s)	664
BseXI	GCAGC	2 cut(s)	190, 391
BseYI	CCCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	77, 159
BsiHKAI	GWGCWC	1 cut(s)	664
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	2 cut(s)	436, 614
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	2 cut(s)	77, 159
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp143I	GATC	2 cut(s)	808, 935
BspANI	GGCC	2 cut(s)	77, 159
BspCNI	CTCAG	1 cut(s)	502
BspHI	TCATGA	1 cut(s)	394
BspPI	GGATC	1 cut(s)	943
BspT104I	TTCGAA	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	481, 890
BssECI	CCNNGG	2 cut(s)	613, 711
BssMI	GATC	2 cut(s)	808, 935
BssT1I	CCWWGG	1 cut(s)	613
Bst4CI	ACNGT	3 cut(s)	225, 263, 368
Bst6I	CTCTTC	2 cut(s)	658, 673
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	120, 409, 838
BstDEI	CTNAG	2 cut(s)	510, 700
BstDSI	CCRYGG	1 cut(s)	711
BstF5I	GGATG	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	842
BstKTI	GATC	2 cut(s)	811, 938
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	808, 935
BstNSI	RCATGY	1 cut(s)	840
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	664
BstV1I	GCAGC	2 cut(s)	190, 391
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	2 cut(s)	808, 935
BstYI	RGATCY	2 cut(s)	808, 935
BsuRI	GGCC	2 cut(s)	77, 159
BtgI	CCRYGG	1 cut(s)	711
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	5 cut(s)	104, 373, 474, 507, 897
Cac8I	GCNNGC	3 cut(s)	120, 409, 838
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	1 cut(s)	842
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	6 cut(s)	273, 395, 545, 837, 874, 910
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	2 cut(s)	510, 700
DpnI	GATC	2 cut(s)	810, 937
DpnII	GATC	2 cut(s)	808, 935
DraI	TTTAAA	2 cut(s)	108, 421
Eam1104I	CTCTTC	2 cut(s)	658, 673
EarI	CTCTTC	2 cut(s)	658, 673
Eco130I	CCWWGG	1 cut(s)	613
Eco32I	GATATC	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	613
FaeI	CATG	6 cut(s)	276, 398, 548, 840, 877, 913
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	6 cut(s)	272, 394, 544, 836, 873, 909
FauNDI	CATATG	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	204, 405
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	204, 405
FspBI	CTAG	2 cut(s)	657, 816
GlaI	GCGC	1 cut(s)	841
GluI	GCNGC	2 cut(s)	204, 405
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	77, 159
HhaI	GCGC	1 cut(s)	842
Hin1II	CATG	6 cut(s)	276, 398, 548, 840, 877, 913
Hin6I	GCGC	1 cut(s)	840
HinP1I	GCGC	1 cut(s)	840
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	3 cut(s)	332, 426, 520
HphI	GGTGA	2 cut(s)	572, 597
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	1 cut(s)	577
Hpy188III	TCNNGA	4 cut(s)	140, 307, 395, 816
Hpy8I	GTNNAC	1 cut(s)	662
HpyAV	CCTTC	4 cut(s)	50, 74, 551, 874
HpyCH4III	ACNGT	3 cut(s)	225, 263, 368
HpyCH4V	TGCA	5 cut(s)	97, 221, 407, 662, 941
HpyF3I	CTNAG	2 cut(s)	510, 700
Hsp92II	CATG	6 cut(s)	276, 398, 548, 840, 877, 913
HspAI	GCGC	1 cut(s)	840
Kzo9I	GATC	2 cut(s)	808, 935
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	140, 313, 462, 480, 903
Lsp1109I	GCAGC	2 cut(s)	190, 391
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	2 cut(s)	657, 816
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	2 cut(s)	810, 937
MboI	GATC	2 cut(s)	808, 935
MboII	GAAGA	8 cut(s)	389, 548, 590, 608, 645, 690, 749, 833
MflI	RGATCY	2 cut(s)	808, 935
MhlI	GDGCHC	1 cut(s)	664
MluCI	AATT	4 cut(s)	103, 291, 433, 866
MlyI	GAGTC	1 cut(s)	514
MmeI	TCCRAC	1 cut(s)	158
MroXI	GAANNNNTTC	4 cut(s)	281, 582, 724, 744
MseI	TTAA	2 cut(s)	107, 420
MspA1I	CMGCKG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	2 cut(s)	808, 935
NlaIII	CATG	6 cut(s)	276, 398, 548, 840, 877, 913
NspI	RCATGY	1 cut(s)	840
NspV	TTCGAA	1 cut(s)	501
PaeI	GCATGC	1 cut(s)	840
PagI	TCATGA	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PdmI	GAANNNNTTC	4 cut(s)	281, 582, 724, 744
PfeI	GAWTC	2 cut(s)	332, 426
PkrI	GCNGC	2 cut(s)	205, 406
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PsiI	TTATAA	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	808, 935
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
SaqAI	TTAA	2 cut(s)	107, 420
SatI	GCNGC	2 cut(s)	204, 405
Sau3AI	GATC	2 cut(s)	808, 935
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	581
SfcI	CTRYAG	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	501
SmiI	ATTTAAAT	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	1 cut(s)	840
Sse9I	AATT	4 cut(s)	103, 291, 433, 866
SspMI	CTAG	2 cut(s)	657, 816
StyI	CCWWGG	1 cut(s)	613
SwaI	ATTTAAAT	1 cut(s)	108
TaaI	ACNGT	3 cut(s)	225, 263, 368
TaqI	TCGA	2 cut(s)	501, 549
TasI	AATT	4 cut(s)	103, 291, 433, 866
TfiI	GAWTC	2 cut(s)	332, 426
Tru1I	TTAA	2 cut(s)	107, 420
Tru9I	TTAA	2 cut(s)	107, 420
TscAI	CASTG	5 cut(s)	104, 373, 481, 514, 897
TseI	GCWGC	2 cut(s)	203, 404
TspDTI	ATGAA	8 cut(s)	69, 375, 414, 549, 654, 717, 914, 918
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	5 cut(s)	104, 373, 481, 514, 897
VneI	GTGCAC	1 cut(s)	660
XapI	RAATTY	1 cut(s)	103
XbaI	TCTAGA	1 cut(s)	815
XceI	RCATGY	1 cut(s)	840
XmnI	GAANNNNTTC	4 cut(s)	281, 582, 724, 744
XspI	CTAG	2 cut(s)	657, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.