Rorug04G0285000

acetyltransferase component of pyruvate dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0011790
Physical Location & Seq
Forward (+)
45813909 .. 45814465
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0285000.1

Sequence Viewer

Length: 438 bp
ATGGATCCCAGAGCTGTAATCTCTGCTGCTATTTATCAGCATTGGGCCGGGGCTAGAGGAGAGGGGCTTTCTTATAATTTCTATGAGGCCTCATGCGCACAAGTTGAGGACATTGTTAGAGCTGCCCTCGGACCTATTTTTCTCTCTGATCCGACTACTCCGGCAGCTTTGTTGAGGCTCATGTTCCATGATTGCCAAGTTCAGGGCTGCGATGCTTCGATTCTTGTAGATTCTAGTGAGGGATATGCATCTTATGAGATGGCATCGGGAAGAAACTTTGGTGTCAGAAAGAGGGAGACAATCGGCATTCTGAAAACAATGGTTGAAGCAGAATGTCCTAAGCAGGTTTCTTGTACTGACATTCTTGTATTGGCGGCATGGGAGGCGGTGGCTATGTTAGTGTTTGATCCCAAAAGTAATTTTGGCAAGATCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

145

Amino Acids

15.79

Weight (kDa)

5.09

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 39 - 133 2.8e-23 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25860
fragaria_vesca FvH4_4g27580
malus_domestica MD13G1043400.v1.1 MD16G1044200.v1.1
prunus_persica Prupe.1G309100_v2.0.a1
pyrus_communis pycom13g03820 pycom16g03840
rosa_chinensis RchiOBHm_Chr4g0435441
rosa_laevigata RLG00000006592
rosa_multiflora Rmu_sc0008521.1_g000001
rosa_roxburghii Rroxscaffold_5G00376680
rosa_rugosa Rorug04G0285000 Rorug04G0285100 Rorug05G0266800
rosa_samantha Rh4AG340800 Rh4BG349100 Rh4CG363600 Rh4DG343300
rosa_wichuraiana Rw4G029720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 75
Acc16I TGCGCA 1 cut(s) 97
Acc36I ACCTGC 1 cut(s) 334
AciI CCGC 2 cut(s) 374, 386
AclWI GGATC 4 cut(s) 12, 143, 401, 424
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 202
AgsI TTSAA 1 cut(s) 326
AluBI AGCT 3 cut(s) 14, 122, 167
AluI AGCT 3 cut(s) 14, 122, 167
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 4 cut(s) 12, 143, 401, 424
AoxI GGCC 2 cut(s) 45, 87
ApeKI GCWGC 4 cut(s) 26, 122, 164, 207
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 2 cut(s) 45, 131
AsuC2I CCSGG 1 cut(s) 49
AvaII GGWCC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 4
BbvI GCAGC 4 cut(s) 13, 109, 176, 194
BccI CCATC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 54, 234
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 5 cut(s) 27, 123, 165, 208, 375
BlsI GCNGC 5 cut(s) 28, 124, 166, 209, 376
Bme1390I CCNGG 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 131
BmgT120I GGNCC 2 cut(s) 45, 131
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 3 cut(s) 202, 257, 272
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu10I CCTNAGC 1 cut(s) 339
BpuMI CCSGG 1 cut(s) 49
BsaBI GATNNNNATC 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 48, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 247
BseDI CCNNGG 2 cut(s) 48, 127
BseJI GATNNNNATC 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 72
BseXI GCAGC 4 cut(s) 13, 109, 176, 194
BshFI GGCC 2 cut(s) 47, 89
BsiSI CCGG 2 cut(s) 48, 161
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 306
BsnI GGCC 2 cut(s) 47, 89
Bsp143I GATC 4 cut(s) 4, 148, 406, 429
BspACI CCGC 2 cut(s) 374, 386
BspANI GGCC 2 cut(s) 47, 89
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 4 cut(s) 12, 143, 401, 424
BssECI CCNNGG 2 cut(s) 48, 127
BssMI GATC 4 cut(s) 4, 148, 406, 429
BstDEI CTNAG 1 cut(s) 339
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 4 cut(s) 7, 151, 409, 432
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 4 cut(s) 4, 148, 406, 429
BstMWI GCNNNNNNNGC 2 cut(s) 95, 383
BstSCI CCNGG 1 cut(s) 47
BstV1I GCAGC 4 cut(s) 13, 109, 176, 194
BstX2I RGATCY 2 cut(s) 4, 429
BstYI RGATCY 2 cut(s) 4, 429
BsuRI GGCC 2 cut(s) 47, 89
BtgZI GCGATG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 334
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 45, 131
Csp6I GTAC 1 cut(s) 354
CviAII CATG 4 cut(s) 93, 181, 188, 378
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 339
DpnI GATC 4 cut(s) 6, 150, 408, 431
DpnII GATC 4 cut(s) 4, 148, 406, 429
Eco147I AGGCCT 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 250
FaeI CATG 4 cut(s) 96, 184, 191, 381
FaiI YATR 9 cut(s) 75, 84, 94, 182, 189, 246, 255, 379, 395
FatI CATG 4 cut(s) 92, 180, 187, 377
Fnu4HI GCNGC 5 cut(s) 27, 123, 165, 208, 375
Fsp4HI GCNGC 5 cut(s) 27, 123, 165, 208, 375
FspAI RTGCGCAY 1 cut(s) 97
FspBI CTAG 2 cut(s) 54, 234
FspI TGCGCA 1 cut(s) 97
GlaI GCGC 1 cut(s) 97
GluI GCNGC 5 cut(s) 27, 123, 165, 208, 375
HaeIII GGCC 2 cut(s) 47, 89
HapII CCGG 2 cut(s) 48, 161
HhaI GCGC 1 cut(s) 98
Hin1II CATG 4 cut(s) 96, 184, 191, 381
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 2 cut(s) 220, 230
HpaII CCGG 2 cut(s) 48, 161
Hpy188I TCNGA 5 cut(s) 131, 148, 153, 287, 312
Hpy188III TCNNGA 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 383
HpyF3I CTNAG 1 cut(s) 339
Hsp92II CATG 4 cut(s) 96, 184, 191, 381
HspAI GCGC 1 cut(s) 96
Kzo9I GATC 4 cut(s) 4, 148, 406, 429
LpnPI CCDG 5 cut(s) 22, 61, 174, 188, 329
Lsp1109I GCAGC 4 cut(s) 13, 109, 176, 194
LweI GCATC 3 cut(s) 202, 257, 272
MaeI CTAG 2 cut(s) 54, 234
MalI GATC 4 cut(s) 6, 150, 408, 431
MboI GATC 4 cut(s) 4, 148, 406, 429
MboII GAAGA 1 cut(s) 282
MflI RGATCY 2 cut(s) 4, 429
MluCI AATT 2 cut(s) 76, 418
MmeI TCCRAC 1 cut(s) 176
Mph1103I ATGCAT 1 cut(s) 250
MspI CCGG 2 cut(s) 48, 161
MspR9I CCNGG 1 cut(s) 49
Mva1269I GAATGC 1 cut(s) 306
MwoI GCNNNNNNNGC 2 cut(s) 95, 383
NciI CCSGG 1 cut(s) 49
NdeII GATC 4 cut(s) 4, 148, 406, 429
NlaIII CATG 4 cut(s) 96, 184, 191, 381
NlaIV GGNNCC 1 cut(s) 6
NsbI TGCGCA 1 cut(s) 97
NsiI ATGCAT 1 cut(s) 250
PceI AGGCCT 1 cut(s) 89
PctI GAATGC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 220, 230
PkrI GCNGC 5 cut(s) 28, 124, 166, 209, 376
PsiI TTATAA 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 45, 131
PsuI RGATCY 2 cut(s) 4, 429
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SatI GCNGC 5 cut(s) 27, 123, 165, 208, 375
Sau3AI GATC 4 cut(s) 4, 148, 406, 429
Sau96I GGNCC 2 cut(s) 45, 131
ScrFI CCNGG 1 cut(s) 49
SetI ASST 5 cut(s) 16, 124, 136, 169, 348
SfaNI GCATC 3 cut(s) 202, 257, 272
SinI GGWCC 1 cut(s) 131
Sse9I AATT 2 cut(s) 76, 418
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 2 cut(s) 374, 386
SspMI CTAG 2 cut(s) 54, 234
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 47
TaqI TCGA 1 cut(s) 218
TasI AATT 2 cut(s) 76, 418
TatI WGTACW 1 cut(s) 353
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 2 cut(s) 220, 230
TseI GCWGC 4 cut(s) 26, 122, 164, 207
VpaK11BI GGWCC 1 cut(s) 131
XspI CTAG 2 cut(s) 54, 234
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.