Rorug05G0266800

acetyltransferase component of pyruvate dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011790
Physical Location & Seq
Forward (+)
30082307 .. 30082738
432 bp
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UTR
Exon/CDS
Intron
Rorug05G0266800.1

Sequence Viewer

Length: 432 bp
ATGAGGAATGCTGAATCAAGGGTAGCCAGTGATGAGAATTCCCGTGCTATTGTGCCGGTTGAGACTGAGAGCCAGGCTAAACGAGGTAGACCTTTTCCCTCCCCACACAAATTGCAATTTTTGATGTCTAACTTACTTGAAGGTAAAACCAGTCCGGTTGCTTCTGCAAAGAAAGTGAAGATGCCTGAATTTTCTTCTAAATTCAGTGCTAAGTCTCTGGGCCTTGTGGAAAGCCCTGGAGGTATGTTGGTGCCGGCTGAGGTCATGATGCCAGTACTTGAGCTGCCGGGGACAAAGAAGAAGAAAGGAAGGCCTTTGGGATCTAAAAATAAAAATCCAAAGACAAAGAAGGTCTCTGCTGAGGAGGTCATGACAGTGCTGTACTCGGGTACACCCCCAAGCCCTAGTTTGAAGGGCAAGGAAAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko00020 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00620 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

143

Amino Acids

15.43

Weight (kDa)

10.12

Isoelectric Point (pI)

68.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011790)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G25860
fragaria_vesca FvH4_4g27580
malus_domestica MD13G1043400.v1.1 MD16G1044200.v1.1
prunus_persica Prupe.1G309100_v2.0.a1
pyrus_communis pycom13g03820 pycom16g03840
rosa_chinensis RchiOBHm_Chr4g0435441
rosa_laevigata RLG00000006592
rosa_multiflora Rmu_sc0008521.1_g000001
rosa_roxburghii Rroxscaffold_5G00376680
rosa_rugosa Rorug04G0285000 Rorug04G0285100 Rorug05G0266800
rosa_samantha Rh4AG340800 Rh4BG349100 Rh4CG363600 Rh4DG343300
rosa_wichuraiana Rw4G029720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccI GTMKAC 1 cut(s) 88
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 3 cut(s) 37, 188, 200
AfaI GTAC 3 cut(s) 276, 383, 391
AgsI TTSAA 2 cut(s) 140, 412
AjnI CCWGG 2 cut(s) 72, 235
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 3 cut(s) 56, 219, 358
AlwI GGATC 1 cut(s) 328
Ama87I CYCGRG 1 cut(s) 385
AoxI GGCC 2 cut(s) 220, 311
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 3 cut(s) 37, 188, 200
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 288
AvaI CYCGRG 1 cut(s) 385
BanI GGYRCC 1 cut(s) 250
BbvCI CCTCAGC 2 cut(s) 258, 360
BbvI GCAGC 1 cut(s) 270
BciT130I CCWGG 2 cut(s) 74, 237
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 56, 219, 358
BfaI CTAG 2 cut(s) 405, 430
BglII AGATCT 1 cut(s) 426
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 3 cut(s) 74, 237, 288
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 3 cut(s) 74, 237, 288
BmsI GCATC 2 cut(s) 171, 258
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 2 cut(s) 258, 360
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 2 cut(s) 235, 287
BsaWI WCCGGW 1 cut(s) 154
Bse118I RCCGGY 2 cut(s) 55, 253
Bse1I ACTGG 3 cut(s) 27, 150, 272
BseBI CCWGG 2 cut(s) 74, 237
BseDI CCNNGG 2 cut(s) 235, 287
BseMII CTCAG 3 cut(s) 57, 249, 351
BseNI ACTGG 3 cut(s) 27, 150, 272
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 270
BshFI GGCC 2 cut(s) 222, 313
BshNI GGYRCC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 4 cut(s) 56, 155, 254, 287
BslFI GGGAC 1 cut(s) 304
BsmAI GTCTC 3 cut(s) 56, 219, 358
BsmFI GGGAC 1 cut(s) 304
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 2 cut(s) 222, 313
Bso31I GGTCTC 1 cut(s) 358
BsoBI CYCGRG 1 cut(s) 385
Bsp143I GATC 2 cut(s) 320, 426
BspANI GGCC 2 cut(s) 222, 313
BspCNI CTCAG 3 cut(s) 58, 250, 352
BspHI TCATGA 2 cut(s) 264, 369
BspLI GGNNCC 1 cut(s) 252
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 1 cut(s) 358
BsrFI RCCGGY 2 cut(s) 55, 253
BsrI ACTGG 3 cut(s) 27, 150, 272
BssAI RCCGGY 2 cut(s) 55, 253
BssECI CCNNGG 2 cut(s) 235, 287
BssMI GATC 2 cut(s) 320, 426
Bst2UI CCWGG 2 cut(s) 74, 237
Bst4CI ACNGT 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 66, 210, 258, 360
BstKTI GATC 2 cut(s) 323, 429
BstMAI GTCTC 3 cut(s) 56, 219, 358
BstMBI GATC 2 cut(s) 320, 426
BstNI CCWGG 2 cut(s) 74, 237
BstSCI CCNGG 3 cut(s) 72, 235, 286
BstV1I GCAGC 1 cut(s) 270
BstX2I RGATCY 2 cut(s) 320, 426
BstYI RGATCY 2 cut(s) 320, 426
BsuRI GGCC 2 cut(s) 222, 313
BtsIMutI CAGTG 3 cut(s) 34, 211, 381
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 2 cut(s) 264, 369
Cfr10I RCCGGY 2 cut(s) 55, 253
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 3 cut(s) 275, 382, 390
CspCI CAANNNNNGTGG 2 cut(s) 93, 128
CviAII CATG 2 cut(s) 265, 370
CviJI RGCY 9 cut(s) 26, 72, 77, 222, 234, 257, 283, 313, 402
CviKI_1 RGCY 9 cut(s) 26, 72, 77, 222, 234, 257, 283, 313, 402
CviQI GTAC 3 cut(s) 275, 382, 390
DdeI CTNAG 4 cut(s) 66, 210, 258, 360
DpnI GATC 2 cut(s) 322, 428
DpnII GATC 2 cut(s) 320, 426
Eco147I AGGCCT 1 cut(s) 313
Eco31I GGTCTC 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 72, 235
FaeI CATG 2 cut(s) 268, 373
FaiI YATR 3 cut(s) 245, 266, 371
FaqI GGGAC 1 cut(s) 304
FatI CATG 2 cut(s) 264, 369
FblI GTMKAC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 2 cut(s) 405, 430
GluI GCNGC 1 cut(s) 284
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 222, 313
HapII CCGG 4 cut(s) 56, 155, 254, 287
Hin1II CATG 2 cut(s) 268, 373
HinfI GANTC 1 cut(s) 14
HpaII CCGG 4 cut(s) 56, 155, 254, 287
Hpy166II GTNNAC 2 cut(s) 89, 392
Hpy188III TCNNGA 2 cut(s) 265, 370
Hpy8I GTNNAC 2 cut(s) 89, 392
HpyAV CCTTC 4 cut(s) 134, 303, 343, 406
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 2 cut(s) 115, 167
HpyF3I CTNAG 4 cut(s) 66, 210, 258, 360
Hsp92II CATG 2 cut(s) 268, 373
KroI GCCGGC 1 cut(s) 253
KroNI GCCGGC 1 cut(s) 255
Kzo9I GATC 2 cut(s) 320, 426
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 2 cut(s) 171, 258
MaeI CTAG 2 cut(s) 405, 430
MalI GATC 2 cut(s) 322, 428
MboI GATC 2 cut(s) 320, 426
MboII GAAGA 4 cut(s) 186, 190, 310, 313
MflI RGATCY 2 cut(s) 320, 426
MluCI AATT 5 cut(s) 37, 110, 116, 188, 200
MnlI CCTC 6 cut(s) 77, 109, 233, 253, 355, 358
MroNI GCCGGC 1 cut(s) 253
MslI CAYNNNNRTG 1 cut(s) 374
MspI CCGG 4 cut(s) 56, 155, 254, 287
MspR9I CCNGG 3 cut(s) 74, 237, 288
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 2 cut(s) 74, 237
NaeI GCCGGC 1 cut(s) 255
NciI CCSGG 1 cut(s) 288
NdeII GATC 2 cut(s) 320, 426
NgoMIV GCCGGC 1 cut(s) 253
NlaIII CATG 2 cut(s) 268, 373
NlaIV GGNNCC 1 cut(s) 252
PagI TCATGA 2 cut(s) 264, 369
PceI AGGCCT 1 cut(s) 313
PctI GAATGC 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 72, 235
PspGI CCWGG 2 cut(s) 72, 235
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 2 cut(s) 320, 426
RsaI GTAC 3 cut(s) 276, 383, 391
RsaNI GTAC 3 cut(s) 275, 382, 390
RseI CAYNNNNRTG 1 cut(s) 374
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 2 cut(s) 320, 426
Sau96I GGNCC 1 cut(s) 220
ScaI AGTACT 1 cut(s) 276
ScrFI CCNGG 3 cut(s) 74, 237, 288
SetI ASST 8 cut(s) 88, 94, 145, 244, 264, 285, 354, 369
SfaNI GCATC 2 cut(s) 171, 258
SmiMI CAYNNNNRTG 1 cut(s) 374
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 5 cut(s) 37, 110, 116, 188, 200
SseBI AGGCCT 1 cut(s) 313
SspMI CTAG 2 cut(s) 405, 430
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 3 cut(s) 72, 235, 286
TaaI ACNGT 1 cut(s) 376
TasI AATT 5 cut(s) 37, 110, 116, 188, 200
TatI WGTACW 2 cut(s) 274, 381
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 3 cut(s) 34, 211, 381
TseI GCWGC 1 cut(s) 283
TspRI CASTG 3 cut(s) 34, 211, 381
XapI RAATTY 3 cut(s) 37, 188, 200
XmiI GTMKAC 1 cut(s) 88
XspI CTAG 2 cut(s) 405, 430
ZrmI AGTACT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.