Rorug04G0285100

acetyltransferase component of pyruvate dehydrogenase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
45863169 .. 45863482
314 bp
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UTR
Exon/CDS
Intron
Rorug04G0285100.1

Sequence Viewer

Length: 264 bp
ATGGGGAGACTTAGTGCGGTGAATTTCCACCGTTTCGAGAATACAAACCCTGCATGCTGCAGAGTAGCAGGGCGCTACGGAGGTCTAATTCCATGCGGTCCTCAGCCATCAAAATTTTGCGTGGATTGGTCGAAGTATATGTTTTGGGATCCTTACCATCCTTCTGATGCTTCTAATTATACAATCATAGCAAGGCGTCTCTTGTATGGGAACTCCAGTGATATTTCACCCATGAATGTAGTGCAACTCCTCCAAGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.79

Weight (kDa)

8.82

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011790)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 96
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 2 cut(s) 22, 113
AcyI GRCGYC 1 cut(s) 196
AluBI AGCT 1 cut(s) 257
AluI AGCT 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 143, 156
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 22, 113
AspLEI GCGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 2 cut(s) 31, 219
AvaII GGWCC 1 cut(s) 98
BamHI GGATCC 1 cut(s) 148
BbvCI CCTCAGC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 44
BccI CCATC 2 cut(s) 115, 165
BcoDI GTCTC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 76
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 196
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 44
BsmAI GTCTC 1 cut(s) 203
BsmBI CGTCTC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 2 cut(s) 17, 96
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 150
BspMAI CTGCAG 1 cut(s) 62
BspPI GGATC 2 cut(s) 143, 156
BsrI ACTGG 1 cut(s) 216
BssMI GATC 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 2 cut(s) 11, 102
BstF5I GGATG 1 cut(s) 157
BstH2I RGCGCY 1 cut(s) 76
BstHHI GCGC 1 cut(s) 75
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 57
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 98
CseI GACGC 1 cut(s) 185
CviAII CATG 3 cut(s) 54, 93, 232
CviJI RGCY 2 cut(s) 106, 257
CviKI_1 RGCY 2 cut(s) 106, 257
DdeI CTNAG 2 cut(s) 11, 102
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 98
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 3 cut(s) 57, 96, 235
FaiI YATR 8 cut(s) 55, 94, 138, 140, 180, 188, 207, 233
FatI CATG 3 cut(s) 53, 92, 231
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 58
GlaI GCGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 76
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 3 cut(s) 57, 96, 235
Hin6I GCGC 1 cut(s) 73
HinP1I GCGC 1 cut(s) 73
HindIII AAGCTT 1 cut(s) 255
HphI GGTGA 2 cut(s) 31, 219
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 37, 261
HpyAV CCTTC 1 cut(s) 171
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 3 cut(s) 53, 60, 244
HpyF3I CTNAG 2 cut(s) 11, 102
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 3 cut(s) 57, 96, 235
HspAI GCGC 1 cut(s) 73
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 54, 63, 229
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 157
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MflI RGATCY 1 cut(s) 148
MluCI AATT 4 cut(s) 22, 87, 113, 175
MnlI CCTC 3 cut(s) 74, 111, 260
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 57, 96, 235
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 1 cut(s) 57
PaeI GCATGC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 148
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 98
SetI ASST 2 cut(s) 85, 259
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 58
SinI GGWCC 1 cut(s) 98
SphI GCATGC 1 cut(s) 57
Sse9I AATT 4 cut(s) 22, 87, 113, 175
SsiI CCGC 2 cut(s) 17, 96
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 2 cut(s) 36, 131
TasI AATT 4 cut(s) 22, 87, 113, 175
TscAI CASTG 1 cut(s) 223
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 22, 113
XceI RCATGY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.