Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012396

Physical Location & Seq

Genomic Coordinates Reverse (-)

45913770 .. 45914792

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0285600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGATTCCGAGCCTTTCGAGAGAGAAAAGAACGTGACTTTTCTGGGGATGATGTACCGGCTCCTCCCACACCAATCCGAAAAAGCTTCATCATCATCTTCTTCTTCTTCCTTTGAAGGTCCTCGTTCTACTGAGGGCCTCTCTGCCGCTTTGTCCGATCAGTCTCGTATTATAGTCGCCAGACCTGTTAGAGGAGTGGTGTCCCTGTGGACATGCTCAAAGTTCTGTGCAATTGCCTTTGTTGCTGGGATCATTGTTGGCTATACCCTGAAGCGACGCATTAAACGCTGGGCTAACAAGCTTCTCAAGAGGATCAAAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

108

Amino Acids

12.1

Weight (kDa)

10.01

Isoelectric Point (pI)

64.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13340
fragaria_vesca	FvH4_4g27660
malus_domestica	MD13G1043900.v1.1 MD16G1044700.v1.1
prunus_persica	Prupe.1G308600_v2.0.a1
pyrus_communis	pycom13g03850 pycom16g03920 pycom16g03930
rosa_chinensis	RchiOBHm_Chr4g0435491
rosa_laevigata	RLG00000006588
rosa_multiflora	Rmu_co8134732.1_g000001 Rmu_sc0001940.1_g000028
rosa_roxburghii	Rroxscaffold_5G00376720
rosa_rugosa	Rorug04G0285600
rosa_samantha	Rh4AG341300 Rh4BG349500 Rh4CG364200 Rh4DG343800
rosa_wichuraiana	Rw4G029770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	257, 320
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	2 cut(s)	86, 301
AluI	AGCT	2 cut(s)	86, 301
Alw26I	GTCTC	1 cut(s)	168
AlwI	GGATC	2 cut(s)	257, 320
AoxI	GGCC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	119, 136
AvaII	GGWCC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	168
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	2 cut(s)	119, 136
BmiI	GGNNCC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpuEI	CTTGAG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	57
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	123
BseRI	GAGGAG	2 cut(s)	53, 207
BseYI	CCCAGC	2 cut(s)	245, 288
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	157, 249, 312
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	257, 320
BsrFI	RCCGGY	1 cut(s)	57
BssAI	RCCGGY	1 cut(s)	57
BssMI	GATC	3 cut(s)	157, 249, 312
BstDEI	CTNAG	1 cut(s)	132
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	3 cut(s)	160, 252, 315
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	3 cut(s)	157, 249, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 285
BstNSI	RCATGY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	119, 136
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	1 cut(s)	213
CviJI	RGCY	7 cut(s)	13, 61, 86, 138, 261, 293, 301
CviKI_1	RGCY	7 cut(s)	13, 61, 86, 138, 261, 293, 301
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	3 cut(s)	159, 251, 314
DpnII	GATC	3 cut(s)	157, 249, 312
Eco47I	GGWCC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	119, 136
FaeI	CATG	1 cut(s)	216
FaiI	YATR	3 cut(s)	173, 214, 264
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
GsaI	CCCAGC	2 cut(s)	249, 292
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	216
HindIII	AAGCTT	2 cut(s)	84, 299
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	10, 79, 157
Hpy188III	TCNNGA	2 cut(s)	19, 307
Hpy8I	GTNNAC	1 cut(s)	210
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 285
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	157, 249, 312
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	8 cut(s)	29, 71, 193, 198, 218, 231, 274, 281
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	159, 251, 314
MboI	GATC	3 cut(s)	157, 249, 312
MboII	GAAGA	4 cut(s)	90, 93, 96, 99
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	1 cut(s)	231
MnlI	CCTC	6 cut(s)	74, 127, 132, 149, 185, 303
MseI	TTAA	1 cut(s)	282
MspI	CCGG	1 cut(s)	58
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	242, 285
NdeII	GATC	3 cut(s)	157, 249, 312
NlaIII	CATG	1 cut(s)	216
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
PspFI	CCCAGC	2 cut(s)	245, 288
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	119, 136
PspPPI	RGGWCCY	1 cut(s)	119
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	157, 249, 312
Sau96I	GGNCC	2 cut(s)	119, 136
SetI	ASST	5 cut(s)	36, 88, 121, 187, 303
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	1 cut(s)	147
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	18
TasI	AATT	1 cut(s)	231
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	119
XagI	CCTNNNNNAGG	1 cut(s)	189
XceI	RCATGY	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.