Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002417

Physical Location & Seq

Genomic Coordinates Forward (+)

49743315 .. 49749664

Gene Structure 6350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0322400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTCTGCCTCTGGTCAAGGTCGGGATTCTCGTCGGTGCAGGCATTCTTGGTTCGTACCTTGCTAAGGAAGGACGTGTATCTGATGTGGTCTCTGGTGCGTTCAAGATTGCTTGGAAGCAAATGCGAGACGATAAAAGTAAAACTCCCTCGGTTAAGAAACCATCCAACGATGCTTTGATGGCTCAGATGAACAAAATACGGCAGGAGCTGCAGTCATATTCGTCAAGTGGACCAATTACAATTGTAACTGGGAGTCGAACAGGTGCTAGCAGATATGGTATAATTATTGTTGTAGTAGTGGCAGGATATGGCTACTTTTGGTGGAAGGGGTGGAAACTTCCTGATATGATGTTTGCAACAAGACGTAGCTTAGCTAATGCTGGCAAGTCTTTTTCTAAACAGATTGACGGTGTCTTTTCATCGATTTCAGTCACCAGGCGACAATTATCTTCAAACTTGGATGGTGTGGACCGTAATTTAGCTGAGAGTATTGAAACCACTGTTAGGACACAACAGGAGGTTATTGAACTACAAGGAAAAACAGATTCCATCAGCACGGATTTTAGAAAAGTTCAACATGCAGTGCTGACTCTGGAAACTAAGATTAACAGAATAGAAGGCAAGCAGGATTCAACTAATGACGGAGTGTGGAGGTTGTGTGACTATGCCAAGAGATTGGAAAATAGCAGAGCCACAGAACGTATTCAGGCATCACCGTCCAACTCTTCTAGGCGACCTCTTGAACTACCGCCAGCCTCACCCTCATCTTTGGTGACACCACCGAAGTCCTCAAGGCCAGCACTCGAGCTACCCCCAGCATCACCCTCAAGAACTGGCTCTTTGCCTCATGTTTTAGAATCTGAACCACGTTGCTTGGGTTCCAATGGAATTCAGGAGAATAATGGAATGTCAGATGTGTTTGACCCATCAGCTTTGGAAAGCACAAGCAATGGAGCTTCCAGTTCTGGTCGATTTGGGTTTAAGTACCCAACCTCTAATACTTCAACAATCCTAAGGACGCGAAGCGCTACAGTTGGGATGCTGCAACAGAATCGATCAGCCAGTAGACAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

359

Amino Acids

39.08

Weight (kDa)

9.96

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1664	PF07889	91 - 210	2.6e-39	Protein of unknown function (DUF1664)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26850 AT1G26850 AT1G26850
fragaria_vesca	FvH4_4g31440 FvH4_4g31440 FvH4_4g31440 FvH4_5g15080
malus_domestica	MD06G1192300.v1.1 MD13G1072700.v1.1 MD14G1198900.v1.1 MD16G1073500.v1.1
prunus_persica	Prupe.1G273400_v2.0.a1 Prupe.1G273400_v2.0.a1 Prupe.1G273400_v2.0.a1 Prupe.5G192000_v2.0.a1 Prupe.5G192000_v2.0.a1
pyrus_communis	pycom06g17040 pycom13g06520 pycom14g16510 pycom16g06360
rosa_chinensis	RchiOBHm_Chr4g0439921 RchiOBHm_Chr7g0181131
rosa_laevigata	RLG00000005211 RLG00000006225
rosa_multiflora	Rmu_sc0001147.1_g000019 Rmu_sc0022459.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272250 Rroxscaffold_5G00380870
rosa_rugosa	Rorug04G0322400 Rorug04G0322500 Rorug06G0438700
rosa_samantha	Rh4AG373400 Rh4BG385700 Rh4CG400200 Rh4DG380000 Rh7AG040600 Rh7BG040000 Rh7CG042000 Rh7DG040400
rosa_wichuraiana	Rw4G031930 Rw7G003350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1069
AccII	CGCG	1 cut(s)	1024
AciI	CCGC	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	891
AfaI	GTAC	2 cut(s)	59, 989
AfeI	AGCGCT	1 cut(s)	1030
AfiI	CCNNNNNNNGG	2 cut(s)	67, 507
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	8 cut(s)	106, 456, 497, 530, 578, 636, 746, 1008
AjiI	CACGTC	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	7 cut(s)	211, 372, 377, 485, 811, 935, 959
AluI	AGCT	7 cut(s)	211, 372, 377, 485, 811, 935, 959
Alw26I	GTCTC	2 cut(s)	97, 123
AlwNI	CAGNNNCTG	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	806
Aor51HI	AGCGCT	1 cut(s)	1030
AoxI	GGCC	1 cut(s)	797
ApeKI	GCWGC	2 cut(s)	211, 1045
ApoI	RAATTY	1 cut(s)	891
Asp700I	GAANNNNTTC	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	1031
AspS9I	GGNCC	2 cut(s)	233, 472
AsuHPI	GGTGA	5 cut(s)	427, 708, 753, 787, 816
AsuNHI	GCTAGC	1 cut(s)	269
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	2 cut(s)	233, 472
AxyI	CCTNAGG	1 cut(s)	1016
BbvI	GCAGC	2 cut(s)	198, 1032
BccI	CCATC	5 cut(s)	172, 175, 458, 560, 937
BceAI	ACGGC	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	1037, 1071
BciT130I	CCWGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	97, 123
BfaI	CTAG	2 cut(s)	270, 732
BfmI	CTRYAG	2 cut(s)	212, 1032
BfoI	RGCGCY	1 cut(s)	1032
BisI	GCNGC	2 cut(s)	212, 1046
BlpI	GCTNAGC	1 cut(s)	373
BlsI	GCNGC	2 cut(s)	213, 1047
Bme1390I	CCNGG	1 cut(s)	439
Bme18I	GGWCC	2 cut(s)	233, 472
BmeT110I	CYCGRG	1 cut(s)	806
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	233, 472
BmiI	GGNNCC	1 cut(s)	883
BmrFI	CCNGG	1 cut(s)	439
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	4 cut(s)	163, 722, 830, 1032
BmtI	GCTAGC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	66
Bpu1102I	GCTNAGC	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	778, 814
Bsa29I	ATCGAT	2 cut(s)	425, 1057
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 646, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 507
Bse1I	ACTGG	4 cut(s)	256, 841, 963, 1065
Bse21I	CCTNAGG	1 cut(s)	1016
Bse3DI	GCAATG	1 cut(s)	958
BseBI	CCWGG	1 cut(s)	439
BseCI	ATCGAT	2 cut(s)	425, 1057
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	164, 469, 1047
BseLI	CCNNNNNNNGG	2 cut(s)	67, 507
BseMI	GCAATG	1 cut(s)	958
BseMII	CTCAG	2 cut(s)	200, 477
BseNI	ACTGG	4 cut(s)	256, 841, 963, 1065
BseXI	GCAGC	2 cut(s)	198, 1032
BseYI	CCCAGC	1 cut(s)	817
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	1024
BshFI	GGCC	1 cut(s)	799
BshVI	ATCGAT	2 cut(s)	425, 1057
BsiHKCI	CYCGRG	1 cut(s)	806
BslI	CCNNNNNNNGG	2 cut(s)	67, 507
BsmAI	GTCTC	2 cut(s)	97, 123
BsmBI	CGTCTC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	799
Bso31I	GGTCTC	1 cut(s)	97
BsoBI	CYCGRG	1 cut(s)	806
Bsp143I	GATC	1 cut(s)	1058
Bsp1720I	GCTNAGC	1 cut(s)	373
BspACI	CCGC	1 cut(s)	752
BspANI	GGCC	1 cut(s)	799
BspCNI	CTCAG	2 cut(s)	199, 478
BspDI	ATCGAT	2 cut(s)	425, 1057
BspFNI	CGCG	1 cut(s)	1024
BspLI	GGNNCC	1 cut(s)	883
BspMAI	CTGCAG	1 cut(s)	216
BspOI	GCTAGC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	958
BsrI	ACTGG	4 cut(s)	256, 841, 963, 1065
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	1058
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	6 cut(s)	413, 476, 505, 720, 1036, 1074
Bst6I	CTCTTC	1 cut(s)	733
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstC8I	GCNNGC	6 cut(s)	43, 271, 385, 626, 756, 801
BstDEI	CTNAG	6 cut(s)	66, 186, 373, 486, 603, 1016
BstENI	CCTNNNNNAGG	1 cut(s)	65
BstF5I	GGATG	3 cut(s)	164, 469, 1047
BstFNI	CGCG	1 cut(s)	1024
BstH2I	RGCGCY	1 cut(s)	1032
BstHHI	GCGC	1 cut(s)	1031
BstKTI	GATC	1 cut(s)	1061
BstMAI	GTCTC	2 cut(s)	97, 123
BstMBI	GATC	1 cut(s)	1058
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 211
BstNI	CCWGG	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	2 cut(s)	212, 1032
BstUI	CGCG	1 cut(s)	1024
BstV1I	GCAGC	2 cut(s)	198, 1032
BstXI	CCANNNNNNTGG	1 cut(s)	679
Bsu15I	ATCGAT	2 cut(s)	425, 1057
Bsu36I	CCTNAGG	1 cut(s)	1016
BsuRI	GGCC	1 cut(s)	799
BsuTUI	ATCGAT	2 cut(s)	425, 1057
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	3 cut(s)	164, 469, 1047
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	2 cut(s)	501, 591
Cac8I	GCNNGC	6 cut(s)	43, 271, 385, 626, 756, 801
CaiI	CAGNNNCTG	1 cut(s)	211
CfoI	GCGC	1 cut(s)	1031
Cfr13I	GGNCC	2 cut(s)	233, 472
ClaI	ATCGAT	2 cut(s)	425, 1057
CseI	GACGC	1 cut(s)	1030
Csp6I	GTAC	2 cut(s)	58, 988
CspCI	CAANNNNNGTGG	2 cut(s)	858, 893
CviAII	CATG	2 cut(s)	581, 851
CviQI	GTAC	2 cut(s)	58, 988
DdeI	CTNAG	6 cut(s)	66, 186, 373, 486, 603, 1016
DpnI	GATC	1 cut(s)	1060
DpnII	GATC	1 cut(s)	1058
Eam1104I	CTCTTC	1 cut(s)	733
EarI	CTCTTC	1 cut(s)	733
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	233, 472
Eco47III	AGCGCT	1 cut(s)	1030
Eco81I	CCTNAGG	1 cut(s)	1016
Eco88I	CYCGRG	1 cut(s)	806
EcoNI	CCTNNNNNAGG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	891
EcoRII	CCWGG	1 cut(s)	437
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	2 cut(s)	584, 854
FaiI	YATR	8 cut(s)	220, 279, 284, 312, 350, 582, 669, 852
FatI	CATG	2 cut(s)	580, 850
FblI	GTMKAC	1 cut(s)	1069
Fnu4HI	GCNGC	2 cut(s)	212, 1046
FokI	GGATG	3 cut(s)	151, 476, 1054
Fsp4HI	GCNGC	2 cut(s)	212, 1046
FspBI	CTAG	2 cut(s)	270, 732
GlaI	GCGC	1 cut(s)	1030
GluI	GCNGC	2 cut(s)	212, 1046
GsaI	CCCAGC	1 cut(s)	821
HaeII	RGCGCY	1 cut(s)	1032
HaeIII	GGCC	1 cut(s)	799
HgaI	GACGC	1 cut(s)	1030
HhaI	GCGC	1 cut(s)	1031
Hin1II	CATG	2 cut(s)	584, 854
Hin6I	GCGC	1 cut(s)	1029
HinP1I	GCGC	1 cut(s)	1029
HinfI	GANTC	7 cut(s)	28, 256, 548, 592, 632, 860, 1054
HphI	GGTGA	5 cut(s)	427, 708, 753, 787, 816
Hpy166II	GTNNAC	3 cut(s)	233, 472, 1070
Hpy188I	TCNGA	5 cut(s)	85, 189, 865, 916, 1079
Hpy188III	TCNNGA	7 cut(s)	25, 106, 344, 596, 743, 831, 896
Hpy8I	GTNNAC	3 cut(s)	233, 472, 1070
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	65, 322, 614
HpyCH4III	ACNGT	6 cut(s)	413, 476, 505, 720, 1036, 1074
HpyCH4IV	ACGT	4 cut(s)	76, 367, 703, 871
HpyCH4V	TGCA	5 cut(s)	41, 214, 359, 584, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 211
HpyF3I	CTNAG	6 cut(s)	66, 186, 373, 486, 603, 1016
HpySE526I	ACGT	4 cut(s)	76, 367, 703, 871
Hsp92II	CATG	2 cut(s)	584, 854
HspAI	GCGC	1 cut(s)	1029
Kzo9I	GATC	1 cut(s)	1058
LmnI	GCTCC	2 cut(s)	208, 956
Lsp1109I	GCAGC	2 cut(s)	198, 1032
LweI	GCATC	4 cut(s)	163, 722, 830, 1032
MaeI	CTAG	2 cut(s)	270, 732
MaeII	ACGT	4 cut(s)	76, 367, 703, 871
MaeIII	GTNAC	4 cut(s)	247, 433, 662, 775
MalI	GATC	1 cut(s)	1060
MboI	GATC	1 cut(s)	1058
MboII	GAAGA	2 cut(s)	444, 720
MfeI	CAATTG	1 cut(s)	243
MluCI	AATT	6 cut(s)	237, 243, 285, 446, 478, 891
MlyI	GAGTC	2 cut(s)	265, 586
MmeI	TCCRAC	2 cut(s)	192, 747
MroXI	GAANNNNTTC	1 cut(s)	705
MseI	TTAA	3 cut(s)	156, 609, 984
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	1 cut(s)	243
Mva1269I	GAATGC	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	439
MvnI	CGCG	1 cut(s)	1024
MwoI	GCNNNNNNNGC	2 cut(s)	182, 211
NdeII	GATC	1 cut(s)	1058
NheI	GCTAGC	1 cut(s)	269
NlaIII	CATG	2 cut(s)	584, 854
NlaIV	GGNNCC	1 cut(s)	883
NmuCI	GTSAC	3 cut(s)	433, 662, 775
NspI	RCATGY	1 cut(s)	584
PaeR7I	CTCGAG	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	5 cut(s)	28, 548, 632, 860, 1054
PflFI	GACNNNGTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	213, 1047
PleI	GAGTC	2 cut(s)	264, 586
PpsI	GAGTC	2 cut(s)	264, 586
Psp6I	CCWGG	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	817
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	883
PspPI	GGNCC	2 cut(s)	233, 472
PspXI	VCTCGAGB	1 cut(s)	806
PstI	CTGCAG	1 cut(s)	216
PstNI	CAGNNNCTG	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	413
RsaI	GTAC	2 cut(s)	59, 989
RsaNI	GTAC	2 cut(s)	58, 988
SaqAI	TTAA	3 cut(s)	156, 609, 984
SatI	GCNGC	2 cut(s)	212, 1046
Sau3AI	GATC	1 cut(s)	1058
Sau96I	GGNCC	2 cut(s)	233, 472
SchI	GAGTC	2 cut(s)	265, 586
ScrFI	CCNGG	1 cut(s)	439
SfaNI	GCATC	4 cut(s)	163, 722, 830, 1032
SfcI	CTRYAG	2 cut(s)	212, 1032
Sfr274I	CTCGAG	1 cut(s)	806
SinI	GGWCC	2 cut(s)	233, 472
SlaI	CTCGAG	1 cut(s)	806
SmlI	CTYRAG	3 cut(s)	793, 806, 829
SmoI	CTYRAG	3 cut(s)	793, 806, 829
Sse9I	AATT	6 cut(s)	237, 243, 285, 446, 478, 891
SsiI	CCGC	1 cut(s)	752
SspMI	CTAG	2 cut(s)	270, 732
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	6 cut(s)	413, 476, 505, 720, 1036, 1074
TaiI	ACGT	4 cut(s)	79, 370, 706, 874
TaqI	TCGA	5 cut(s)	259, 425, 807, 973, 1057
TasI	AATT	6 cut(s)	237, 243, 285, 446, 478, 891
TfiI	GAWTC	5 cut(s)	28, 548, 632, 860, 1054
Tru1I	TTAA	3 cut(s)	156, 609, 984
Tru9I	TTAA	3 cut(s)	156, 609, 984
TscAI	CASTG	2 cut(s)	508, 591
TseFI	GTSAC	3 cut(s)	433, 662, 775
TseI	GCWGC	2 cut(s)	211, 1045
Tsp45I	GTSAC	3 cut(s)	433, 662, 775
TspDTI	ATGAA	2 cut(s)	206, 411
TspGWI	ACGGA	2 cut(s)	575, 660
TspRI	CASTG	2 cut(s)	508, 591
Tth111I	GACNNNGTC	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	233, 472
XagI	CCTNNNNNAGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	891
XceI	RCATGY	1 cut(s)	584
XhoI	CTCGAG	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	1069
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	2 cut(s)	270, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.