Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002417

Physical Location & Seq

Genomic Coordinates Forward (+)

49795349 .. 49795802

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0322500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTTTGCTAGTTCACAGATACCTTCGTCAAAGCATCAAACTCGGCCGGGAGTATTCATGGAATTTTGCAAGCATGATTCCTGTTTTGTCCTCATTTTGCAAAAATTTACATCGTTGCCGTTTGCCTTGGGTATCGGCTTCTATCGAGAAGCCTCTACAGCGGTAGAATCAACTCTTCCAGATGATCAGTCCCAGCCACCGATAAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

70

Amino Acids

7.77

Weight (kDa)

6.7

Isoelectric Point (pI)

62.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26850 AT1G26850 AT1G26850
fragaria_vesca	FvH4_4g31440 FvH4_4g31440 FvH4_4g31440 FvH4_5g15080
malus_domestica	MD06G1192300.v1.1 MD13G1072700.v1.1 MD14G1198900.v1.1 MD16G1073500.v1.1
prunus_persica	Prupe.1G273400_v2.0.a1 Prupe.1G273400_v2.0.a1 Prupe.1G273400_v2.0.a1 Prupe.5G192000_v2.0.a1 Prupe.5G192000_v2.0.a1
pyrus_communis	pycom06g17040 pycom13g06520 pycom14g16510 pycom16g06360
rosa_chinensis	RchiOBHm_Chr4g0439921 RchiOBHm_Chr7g0181131
rosa_laevigata	RLG00000005211 RLG00000006225
rosa_multiflora	Rmu_sc0001147.1_g000019 Rmu_sc0022459.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272250 Rroxscaffold_5G00380870
rosa_rugosa	Rorug04G0322400 Rorug04G0322500 Rorug06G0438700
rosa_samantha	Rh4AG373400 Rh4BG385700 Rh4CG400200 Rh4DG380000 Rh7AG040600 Rh7BG040000 Rh7CG042000 Rh7DG040400
rosa_wichuraiana	Rw4G031930 Rw7G003350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	62, 104
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
AoxI	GGCC	1 cut(s)	44
ApoI	RAATTY	2 cut(s)	62, 104
AsuC2I	CCSGG	1 cut(s)	48
BaeI	ACNNNNGTAYC	2 cut(s)	11, 44
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	126
BseX3I	CGGCCG	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	46
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	71
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	156
BstZI	CGGCCG	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	71
CviAII	CATG	2 cut(s)	58, 74
CviJI	RGCY	5 cut(s)	46, 138, 152, 196, 209
CviKI_1	RGCY	5 cut(s)	46, 138, 152, 196, 209
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	44
EagI	CGGCCG	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EclXI	CGGCCG	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	2 cut(s)	61, 77
FaiI	YATR	2 cut(s)	59, 75
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	57, 73
FbaI	TGATCA	1 cut(s)	184
FspBI	CTAG	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	47
Hin1II	CATG	2 cut(s)	61, 77
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	2 cut(s)	77, 167
HpaII	CCGG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188III	TCNNGA	2 cut(s)	146, 179
Hpy8I	GTNNAC	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	33
HpyCH4V	TGCA	2 cut(s)	69, 100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	61, 77
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	184
LpnPI	CCDG	4 cut(s)	60, 94, 192, 206
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	9
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	167
MluCI	AATT	2 cut(s)	62, 104
MnlI	CCTC	2 cut(s)	101, 163
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	61, 77
NmeAIII	GCCGAG	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	77, 167
PspFI	CCCAGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	2 cut(s)	25, 211
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	156
Sse9I	AATT	2 cut(s)	62, 104
SsiI	CCGC	1 cut(s)	161
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	126
TaqI	TCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	62, 104
TfiI	GAWTC	2 cut(s)	77, 167
TspDTI	ATGAA	1 cut(s)	46
XapI	RAATTY	2 cut(s)	62, 104
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.