Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005215

Physical Location & Seq

Genomic Coordinates Forward (+)

52470546 .. 52472245

Gene Structure 1700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0352500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGAGATAGAGAATCTCTTCCTTCCTCTATCCATCATCGTTTCCGTATATACTCTCGCCTTCATCTTTTACACTATCAGGTCCAAATCCAACTCCAAAATGAATCTTCCCCCAGGAAGTTTCGGATGGCCAATCATCGGTGAAACTTTCGCCTTTCTGAATGAGCCGCAGGAGAAGTTCGTGGGCGACAGAATGAAGAAATACTCCCCAAAAGTCTTCAAAACGAGCATACTCGATGAGCCAACTGCCGTGCTTTGCGGCATTTCCGGCCACAAGTTCATCTCTTCCAACGAGGAAAAACTGTTTCTGTCATGGCGACCGCAGTCCACACAGAAACTCTTCCGCTCCTCCTATCAAAAAGCTGCTTCCGAGATCACCAAACGAGCCGATTCAGTCCATATCGGTAAAGCACCAGGGTTTCTTAAACCTGAAGCGGTGGTTCGGTACATAGAGAGCATGGAGTCCATAGTTCAGGAGCATTTGAAGGTTCACTGGGAAGGAAAAAGTACAGTTGAGATTTACAGCCTCGCTCAGCTACTTGTAACGACTCTGTCCGCTCGATTCTTCACTGGACTCCAAAACAATAACGACCGTTGTGTTAAGTTTGCCGAGTTGATTAATATCATAGCCTCAGGGCTGCATACGTTCCCAATTAATATTCCAGGAACCGAGTTTTATCGAGCGATGAAAGCAGCCGAGGCTATGAGGAAGGAGGTTCTGTTGTTGATCAAGGAGAAGAAAGCGGCCGTGTCTTCCAGTGGAGCCAAAGTAACCGACATCATGTCTCATTTGCTGTTTAACCCGGATCCGACTGGGCGGTTCATACCGGAGAATGAAGTTGCAGATAAGGTCATGGGTTTGATGACGGGTGGATTTCACTCCCCTTCCATGGCTACAAGTTTTCTCATCAAGTTTCTTGGTGAAAACCCTAAAGTTTGTGAGAAAGTCCGAACAGAACAATTGGAGATTGCAAGCTCAAAACAAGATGGTGAGAATCTTAATTGGGAAGATATACAGAAAATGAAATATTCTTGGGCTGTAGCACTTGAAGTGATGAGGCTGGTGCCACCTCTTCAAGGAACGTTCAGAGAAGTTGTTACCGACTTCACCTATGAAGGTTACACAATTCCAAAAGGATGGAAGGTATATTGGTCCTCCAGCAGCACGAATAAAATTGCAGAGCATTTTCCAGCACCAGAAGAGTTTGATCCGAGCAGGTTTGAGAATGGAAAGGCCGCTCCAGCTTACTCGAACATCCCATTCGGAAGCGGTCCTCGAATCTGTCCAGGAAAAGAATACGCTCGACTTCAACTTATGTGTTTCCTCCATCACGTCGTTACAAGATACAAATGGGAAGTGATAAATACAAAGGCCAAAATTGCAGGCGGTTTGAATCCTGTTCCAAAAGAAGGGTTTCACATTCGCGTCCAACTTTACAATAAGTTGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Xan_ur_permease

Protein Analysis

483

Amino Acids

54.48

Weight (kDa)

9.1

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	37 - 457	6.2e-52	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005215)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10540 AT1G10540 AT1G60030
fragaria_vesca	FvH4_4g34940 FvH4_4g34940 FvH4_4g34940 FvH4_4g34940 FvH4_4g34940
malus_domestica	MD13G1087500.v1.1 MD16G1088000.v1.1
prunus_persica	Prupe.1G258700_v2.0.a1 Prupe.1G258700_v2.0.a1 Prupe.1G258700_v2.0.a1
pyrus_communis	pycom13g07540 pycom16g07540
rosa_chinensis	RchiOBHm_Chr4g0444391
rosa_laevigata	RLG00000005835
rosa_multiflora	Rmu_sc0002841.1_g000007 Rmu_sc0019696.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384920
rosa_rugosa	Rorug04G0352500 Rorug04G0352600 Rorug04G0352600 Rorug04G0352700 Rorug04G0352700 Rorug04G0352700
rosa_samantha	Rh4AG412800 Rh4BG424300
rosa_wichuraiana	Rw4G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1206
AccB1I	GGYRCC	1 cut(s)	1063
AccBSI	CCGCTC	3 cut(s)	345, 557, 1238
AccII	CGCG	1 cut(s)	1425
AclI	AACGTT	1 cut(s)	1082
AclWI	GGATC	3 cut(s)	800, 813, 1202
AcoI	YGGCCR	3 cut(s)	128, 268, 744
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	446, 508
AfiI	CCNNNNNNNGG	4 cut(s)	137, 889, 1076, 1409
AgsI	TTSAA	6 cut(s)	220, 484, 1049, 1076, 1310, 1393
AhdI	GACNNNNNGTC	1 cut(s)	781
AjiI	CACGTC	1 cut(s)	1333
AjnI	CCWGG	4 cut(s)	112, 412, 661, 1285
AluBI	AGCT	4 cut(s)	362, 535, 975, 1244
AluI	AGCT	4 cut(s)	362, 535, 975, 1244
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	3 cut(s)	800, 813, 1202
AoxI	GGCC	6 cut(s)	128, 268, 744, 1233, 1371, 1446
ApeKI	GCWGC	4 cut(s)	362, 637, 692, 1161
AseI	ATTAAT	2 cut(s)	618, 654
Asp700I	GAANNNNTTC	3 cut(s)	17, 338, 1413
AspS9I	GGNCC	3 cut(s)	81, 1152, 1271
AsuC2I	CCSGG	1 cut(s)	803
AsuHPI	GGTGA	5 cut(s)	152, 367, 932, 1001, 1099
AvaII	GGWCC	3 cut(s)	81, 1152, 1271
AxyI	CCTNAGG	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	1063
BbsI	GAAGAC	2 cut(s)	208, 744
BbvI	GCAGC	4 cut(s)	349, 624, 704, 1173
BccI	CCATC	5 cut(s)	41, 120, 980, 1131, 1335
BceAI	ACGGC	2 cut(s)	233, 731
BciT130I	CCWGG	4 cut(s)	114, 414, 663, 1287
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	803
BcoDI	GTCTC	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	1038
BfuAI	ACCTGC	1 cut(s)	1206
BisI	GCNGC	8 cut(s)	167, 259, 363, 638, 693, 744, 1162, 1236
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	8 cut(s)	168, 260, 364, 639, 694, 745, 1163, 1237
Bme1390I	CCNGG	5 cut(s)	114, 414, 663, 803, 1287
Bme18I	GGWCC	3 cut(s)	81, 1152, 1271
BmeRI	GACNNNNNGTC	1 cut(s)	781
BmgBI	CACGTC	1 cut(s)	1333
BmgT120I	GGNCC	3 cut(s)	81, 1152, 1271
BmiI	GGNNCC	4 cut(s)	667, 763, 807, 1065
BmrFI	CCNGG	5 cut(s)	114, 414, 663, 803, 1287
BmrI	ACTGGG	2 cut(s)	502, 822
BmuI	ACTGGG	2 cut(s)	502, 822
BoxI	GACNNNNGTC	1 cut(s)	322
BpiI	GAAGAC	2 cut(s)	208, 744
BpmI	CTGGAG	2 cut(s)	1141, 1224
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	4 cut(s)	112, 413, 696, 888
BsaWI	WCCGGW	1 cut(s)	826
BsaXI	ACNNNNNCTCC	4 cut(s)	704, 734, 753, 783
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 889, 1076, 1409
Bse1I	ACTGG	4 cut(s)	497, 574, 756, 817
Bse21I	CCTNAGG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	620
BseBI	CCWGG	4 cut(s)	114, 414, 663, 1287
BseDI	CCNNGG	4 cut(s)	112, 413, 696, 888
BseGI	GGATG	3 cut(s)	131, 1142, 1254
BseJI	GATNNNNATC	1 cut(s)	620
BseLI	CCNNNNNNNGG	4 cut(s)	137, 889, 1076, 1409
BseMII	CTCAG	2 cut(s)	545, 645
BseNI	ACTGG	4 cut(s)	497, 574, 756, 817
BseRI	GAGGAG	1 cut(s)	337
BseX3I	CGGCCG	1 cut(s)	744
BseXI	GCAGC	4 cut(s)	349, 624, 704, 1173
Bsh1236I	CGCG	1 cut(s)	1425
Bsh1285I	CGRYCG	3 cut(s)	320, 592, 747
BshFI	GGCC	6 cut(s)	130, 270, 746, 1235, 1373, 1448
BshNI	GGYRCC	1 cut(s)	1063
BsiEI	CGRYCG	3 cut(s)	320, 592, 747
BsiSI	CCGG	3 cut(s)	267, 803, 827
BslI	CCNNNNNNNGG	4 cut(s)	137, 889, 1076, 1409
BsmAI	GTCTC	1 cut(s)	789
BsnI	GGCC	6 cut(s)	130, 270, 746, 1235, 1373, 1448
Bsp143I	GATC	4 cut(s)	372, 726, 805, 1207
Bsp1720I	GCTNAGC	1 cut(s)	531
Bsp19I	CCATGG	1 cut(s)	888
BspANI	GGCC	6 cut(s)	130, 270, 746, 1235, 1373, 1448
BspCNI	CTCAG	2 cut(s)	544, 644
BspFNI	CGCG	1 cut(s)	1425
BspLI	GGNNCC	4 cut(s)	667, 763, 807, 1065
BspMI	ACCTGC	1 cut(s)	1206
BspPI	GGATC	3 cut(s)	800, 813, 1202
BspT107I	GGYRCC	1 cut(s)	1063
BsrBI	CCGCTC	3 cut(s)	345, 557, 1238
BsrI	ACTGG	4 cut(s)	497, 574, 756, 817
BssECI	CCNNGG	4 cut(s)	112, 413, 696, 888
BssMI	GATC	4 cut(s)	372, 726, 805, 1207
BssT1I	CCWWGG	1 cut(s)	888
Bst2UI	CCWGG	4 cut(s)	114, 414, 663, 1287
Bst4CI	ACNGT	3 cut(s)	303, 511, 593
Bst6I	CTCTTC	5 cut(s)	23, 289, 344, 1077, 1194
BstC8I	GCNNGC	2 cut(s)	973, 1384
BstDEI	CTNAG	2 cut(s)	531, 631
BstDSI	CCRYGG	1 cut(s)	888
BstENI	CCTNNNNNAGG	1 cut(s)	1074
BstF5I	GGATG	3 cut(s)	131, 1142, 1254
BstFNI	CGCG	1 cut(s)	1425
BstKTI	GATC	4 cut(s)	375, 729, 808, 1210
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	4 cut(s)	372, 726, 805, 1207
BstMCI	CGRYCG	3 cut(s)	320, 592, 747
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 689, 698, 1241, 1379
BstNI	CCWGG	4 cut(s)	114, 414, 663, 1287
BstPAI	GACNNNNGTC	1 cut(s)	322
BstSCI	CCNGG	5 cut(s)	112, 412, 661, 801, 1285
BstSFI	CTRYAG	1 cut(s)	1038
BstUI	CGCG	1 cut(s)	1425
BstV1I	GCAGC	4 cut(s)	349, 624, 704, 1173
BstV2I	GAAGAC	2 cut(s)	208, 744
BstX2I	RGATCY	1 cut(s)	805
BstXI	CCANNNNNNTGG	1 cut(s)	1137
BstYI	RGATCY	1 cut(s)	805
BstZI	CGGCCG	1 cut(s)	744
Bsu36I	CCTNAGG	1 cut(s)	631
BsuRI	GGCC	6 cut(s)	130, 270, 746, 1235, 1373, 1448
BtgI	CCRYGG	1 cut(s)	888
BtgZI	GCGATG	1 cut(s)	698
BtrI	CACGTC	1 cut(s)	1333
BtsCI	GGATG	3 cut(s)	131, 1142, 1254
BtsIMutI	CAGTG	3 cut(s)	490, 567, 763
BveI	ACCTGC	1 cut(s)	1206
Cac8I	GCNNGC	2 cut(s)	973, 1384
Cfr13I	GGNCC	3 cut(s)	81, 1152, 1271
CseI	GACGC	1 cut(s)	1414
Csp6I	GTAC	2 cut(s)	445, 507
CviAII	CATG	5 cut(s)	312, 457, 781, 853, 889
CviQI	GTAC	2 cut(s)	445, 507
DdeI	CTNAG	2 cut(s)	531, 631
DpnI	GATC	4 cut(s)	374, 728, 807, 1209
DpnII	GATC	4 cut(s)	372, 726, 805, 1207
DriI	GACNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	3 cut(s)	128, 268, 744
EagI	CGGCCG	1 cut(s)	744
Eam1104I	CTCTTC	5 cut(s)	23, 289, 344, 1077, 1194
Eam1105I	GACNNNNNGTC	1 cut(s)	781
EarI	CTCTTC	5 cut(s)	23, 289, 344, 1077, 1194
EclXI	CGGCCG	1 cut(s)	744
Eco130I	CCWWGG	1 cut(s)	888
Eco47I	GGWCC	3 cut(s)	81, 1152, 1271
Eco52I	CGGCCG	1 cut(s)	744
Eco57I	CTGAAG	1 cut(s)	450
Eco81I	CCTNAGG	1 cut(s)	631
EcoNI	CCTNNNNNAGG	1 cut(s)	1074
EcoRII	CCWGG	4 cut(s)	112, 412, 661, 1285
EcoT14I	CCWWGG	1 cut(s)	888
ErhI	CCWWGG	1 cut(s)	888
FaeI	CATG	5 cut(s)	315, 460, 784, 856, 892
FatI	CATG	5 cut(s)	311, 456, 780, 852, 888
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	8 cut(s)	167, 259, 363, 638, 693, 744, 1162, 1236
FokI	GGATG	3 cut(s)	138, 1149, 1241
Fsp4HI	GCNGC	8 cut(s)	167, 259, 363, 638, 693, 744, 1162, 1236
GluI	GCNGC	8 cut(s)	167, 259, 363, 638, 693, 744, 1162, 1236
GsuI	CTGGAG	2 cut(s)	1141, 1224
HaeIII	GGCC	6 cut(s)	130, 270, 746, 1235, 1373, 1448
HapII	CCGG	3 cut(s)	267, 803, 827
HgaI	GACGC	1 cut(s)	1414
Hin1II	CATG	5 cut(s)	315, 460, 784, 856, 892
HpaII	CCGG	3 cut(s)	267, 803, 827
HphI	GGTGA	5 cut(s)	152, 367, 932, 1001, 1099
Hpy166II	GTNNAC	2 cut(s)	327, 490
Hpy188I	TCNGA	8 cut(s)	125, 159, 370, 810, 950, 1088, 1212, 1265
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	2 cut(s)	327, 490
Hpy99I	CGWCG	1 cut(s)	1337
HpyAV	CCTTC	9 cut(s)	32, 70, 478, 491, 703, 894, 1109, 1135, 1403
HpyCH4III	ACNGT	3 cut(s)	303, 511, 593
HpyCH4IV	ACGT	3 cut(s)	644, 1082, 1332
HpyCH4V	TGCA	5 cut(s)	640, 842, 971, 1178, 1382
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 689, 698, 1241, 1379
HpyF3I	CTNAG	2 cut(s)	531, 631
HpySE526I	ACGT	3 cut(s)	644, 1082, 1332
Hsp92II	CATG	5 cut(s)	315, 460, 784, 856, 892
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	4 cut(s)	372, 726, 805, 1207
LmnI	GCTCC	4 cut(s)	350, 475, 761, 1243
Lsp1109I	GCAGC	4 cut(s)	349, 624, 704, 1173
MaeII	ACGT	3 cut(s)	644, 1082, 1332
MaeIII	GTNAC	5 cut(s)	541, 769, 1096, 1118, 1336
MalI	GATC	4 cut(s)	374, 728, 807, 1209
MbiI	CCGCTC	3 cut(s)	345, 557, 1238
MboI	GATC	4 cut(s)	372, 726, 805, 1207
MfeI	CAATTG	1 cut(s)	959
MflI	RGATCY	1 cut(s)	805
MlsI	TGGCCA	1 cut(s)	130
MluCI	AATT	6 cut(s)	651, 959, 1000, 1125, 1173, 1377
MluNI	TGGCCA	1 cut(s)	130
MlyI	GAGTC	3 cut(s)	470, 541, 567
MmeI	TCCRAC	3 cut(s)	114, 312, 833
Mox20I	TGGCCA	1 cut(s)	130
MroXI	GAANNNNTTC	3 cut(s)	17, 338, 1413
MscI	TGGCCA	1 cut(s)	130
MseI	TTAA	6 cut(s)	423, 600, 618, 654, 798, 999
Msp20I	TGGCCA	1 cut(s)	130
MspI	CCGG	3 cut(s)	267, 803, 827
MspR9I	CCNGG	5 cut(s)	114, 414, 663, 803, 1287
MunI	CAATTG	1 cut(s)	959
MvaI	CCWGG	4 cut(s)	114, 414, 663, 1287
MvnI	CGCG	1 cut(s)	1425
MwoI	GCNNNNNNNGC	5 cut(s)	267, 689, 698, 1241, 1379
NciI	CCSGG	1 cut(s)	803
NcoI	CCATGG	1 cut(s)	888
NdeII	GATC	4 cut(s)	372, 726, 805, 1207
NlaIII	CATG	5 cut(s)	315, 460, 784, 856, 892
NlaIV	GGNNCC	4 cut(s)	667, 763, 807, 1065
NmeAIII	GCCGAG	2 cut(s)	634, 721
PdmI	GAANNNNTTC	3 cut(s)	17, 338, 1413
PfeI	GAWTC	7 cut(s)	13, 103, 389, 561, 994, 1278, 1393
PflFI	GACNNNGTC	1 cut(s)	550
PfoI	TCCNGGA	2 cut(s)	661, 1285
PkrI	GCNGC	8 cut(s)	168, 260, 364, 639, 694, 745, 1163, 1237
PleI	GAGTC	3 cut(s)	469, 541, 567
PpsI	GAGTC	3 cut(s)	469, 541, 567
PshAI	GACNNNNGTC	1 cut(s)	322
PshBI	ATTAAT	2 cut(s)	618, 654
Psp1406I	AACGTT	1 cut(s)	1082
Psp6I	CCWGG	4 cut(s)	112, 412, 661, 1285
PspGI	CCWGG	4 cut(s)	112, 412, 661, 1285
PspN4I	GGNNCC	4 cut(s)	667, 763, 807, 1065
PspPI	GGNCC	3 cut(s)	81, 1152, 1271
PsuI	RGATCY	1 cut(s)	805
PsyI	GACNNNGTC	1 cut(s)	550
RsaI	GTAC	2 cut(s)	446, 508
RsaNI	GTAC	2 cut(s)	445, 507
SaqAI	TTAA	6 cut(s)	423, 600, 618, 654, 798, 999
SatI	GCNGC	8 cut(s)	167, 259, 363, 638, 693, 744, 1162, 1236
Sau3AI	GATC	4 cut(s)	372, 726, 805, 1207
Sau96I	GGNCC	3 cut(s)	81, 1152, 1271
SchI	GAGTC	3 cut(s)	470, 541, 567
ScrFI	CCNGG	5 cut(s)	114, 414, 663, 803, 1287
SfcI	CTRYAG	1 cut(s)	1038
SinI	GGWCC	3 cut(s)	81, 1152, 1271
Sse9I	AATT	6 cut(s)	651, 959, 1000, 1125, 1173, 1377
SspI	AATATT	2 cut(s)	658, 1028
StyD4I	CCNGG	5 cut(s)	112, 412, 661, 801, 1285
StyI	CCWWGG	1 cut(s)	888
TaaI	ACNGT	3 cut(s)	303, 511, 593
TaiI	ACGT	3 cut(s)	647, 1085, 1335
TaqI	TCGA	6 cut(s)	234, 559, 679, 1250, 1276, 1303
TasI	AATT	6 cut(s)	651, 959, 1000, 1125, 1173, 1377
TatI	WGTACW	1 cut(s)	506
TauI	GCSGC	4 cut(s)	169, 261, 746, 1238
TfiI	GAWTC	7 cut(s)	13, 103, 389, 561, 994, 1278, 1393
Tru1I	TTAA	6 cut(s)	423, 600, 618, 654, 798, 999
Tru9I	TTAA	6 cut(s)	423, 600, 618, 654, 798, 999
TscAI	CASTG	3 cut(s)	497, 574, 763
TseI	GCWGC	4 cut(s)	362, 637, 692, 1161
TspDTI	ATGAA	9 cut(s)	52, 116, 209, 268, 701, 811, 849, 1037, 1128
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	3 cut(s)	497, 574, 763
Tth111I	GACNNNGTC	1 cut(s)	550
VpaK11BI	GGWCC	3 cut(s)	81, 1152, 1271
VspI	ATTAAT	2 cut(s)	618, 654
XagI	CCTNNNNNAGG	1 cut(s)	1074
XmnI	GAANNNNTTC	3 cut(s)	17, 338, 1413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.